Information report for g00880
Gene Details
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Functional Annotation
- Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
- encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.
- Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. Mutations in TIR1 block auxin stimulation of flavonoid synthesis.
- Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC).
- POZ/BTB containing-protein AtPOB1. Involvement in protein ubiquitylation is predicted based on physical interaction with CULLIN 3 proteins.
Homologous
- Brassica napus: BnaC07G0502300ZS, BnaA03G0524300ZS, BnaA08G0151900ZS, BnaC03G0768600ZS
- Brassica oleracea: Bo7g114970, Bo3g175190
- Brassica rapa: Bra024023, Bra010256
- Citrullus lanatus: Cla97C05G098580
- Glycine max: Glyma.04G074200
- Gossypium hirsutum: Gohir.A07G001000, Gohir.D07G001400
- Juglans regia: Jr08_02330
- Manihot esculenta: MANES_12G085100
- Populus trichocarpa: POPTR_018G000500v3
- Prunus persica: PRUPE_1G463300
Gene Resources
Sequences
gDNA Sequence
- >g00880
TGTCAAAAACCCTTTCGTTTTCGTCGTCGGCTCGAGAAAAAAAGATTCACTTGCATCTTTCAATTCCTTCACTCCCTGTCCCTGTGAGCTCGATAGAGAGAAGAGAGAAGAGATGCCGCTCGGAGAAAGAGGAGGATGGGAGCGCACCGAGTCCAGGTACTGCGGCGTTGAGACTGATTTCTCCAACGATGTTACTCATCTTCTCAACTTCAACATTTCCACCGGCGGTTTTGACTATATCCTCGCTCCTCTGGTTTGTTTCTTTCTTCCTCCCGAATCTCACGTCGTTGTCTGTTGTTACTGTATCAATTGGGATTTGAAAGTTTATATCTTTAATGGAGTTTACTTCTTTCTCTTCCTGCAGGTGAACCCTTCGTATAGGCCGAGCTTGGTGGAAGGAAATGGTGTAGATACTCAGGTTCTTCCAGTCTCTGGCTCTGACTTAGTCTTGTCACCTTCTCAATGGAGCAGTCATGTTGTTGGTATGCTTCGATTTGCTTCTCCCCCGTGTGCTTTTGTGCTTGTTATGAATGATGGATTTTGACATTAGTGGTAAATTTTCATTCTCTAGGAAAAATTAGTTCGTGGATTGACTTGGATTCTGAAGATGAGGTCTTGCGGATGGATTCAGAAACCACATTGAAGCAAGAAATAGCTTGGGCTACTCATCTCTCCTTACAGGTGCTTGTTACTCTTATGGATTTAACTCACCCGGTTGCCTCTTTGTTTTCTTTGCTGCAAAGTGATTTCTTCTTGCAGTTTTAGATTGTTATGCTTGAGGAGAAATTCTGTTGTTAATGTCTGTTATGTTAATATGTCGCAGGCATGTCTTCTTCCCACTCCTAAAGGGAAATCGTGCGCCAATTATGCCAGATGTGTGAACCAGATCTTACAAGGGCTGACTACCTTGCAGGTGGTTTACGAGTTTCTTGCTGCCGGTCTGGCTTTATTTAAGATGAGACTTTTCTTTACAAGATCACCTTCAATCAAGCTCTAACGTTTAGTTGCTTCTTCTTTGTTTTGTTTAAATGTCATTCTGCGCTGAAGTTATGGCTGAGGGTTCCACTGGTGAAGTCTGATGGTGATTCAATGGATGATACCTCAGAGGGACTGGTAAGACGTAGGATCAAAGTTGATGCAAACTTAAGATTATTCGTACTTTTTGTGCCTTCTCAGTTTTTTGAGGGACTCTCTAGTGCGGAGCCCTTGGGATCACTTGATGTTACTTGTGTTAATAGGCCTTTTAAACCTATAAATACAATTTGAATGTCCCTATCTGTTCACTTTTTTTGTAGGCTTTGTGTTAGGATCGCTTTAATATATATACTCTCATTCTATGCAGAATGATTCTTGGGAGCTGTGGAATTCGTTTCGCCTTCTTTGTGAGCATGACAGTAAGCTGTCTGTTGCTCTTGATGTTCTGTGAGTTGAGAGAAATTCTTGATTATTTTTGTTAATGTGGACCCAAAGTTTTTTTTCCACTCTTCAAACATAACACCATTTCCTTCATCTAGGAGTACACTACCCTCTGAAACTTCACTAGGGCGCTGGATGGGAGAGTCTGTGAGAGCAGCCATATTAAGCACTGATGTGAGTGCCCGACTTTTTGCCGCATTATTAGAAACTCCACTTTGAAGTATTGTGAATCACAAAATGCTTTTAATTTGGGTTTGCAGGCTTTCTTAACAAATGCTCGGGGTTATCCTTGCTTGTCAAAACGCCACCAAAAGTTAATAGCAGGATTTTTTGATCATGCTGCCCAGGTAACAAACATCCCACTCTTTGTGATATATAACTCTTAATTCAAATCTTCTTTTGACTCACAAAATAGATCTATTTCACTCGATCTGGTGGTCATTATCATCAATCTTGTAAATGCAGGTTGTAATTTCTGGAAAGCCTGTTCATAATCTTCAAAAGTCTCTTGATTCTAACACGGAGGGTAATTTTTCTGTATAATCTTTTGTCCGCTGACAATTAGCTATTATCCTCTGGCCTTGTTTTCCATAGCTCAATTTATCACGGGCATTGGTTATTATCATAGTTGATACCAAGTTTTGAGCTAAATATTTCTTACGGGCATTATATTTCAGGTACAGAGAAGAATCCTCTGCGGATATATTTGGACTATGTTGCTTTTCTGTTCCAAAAGATGGAAGCACTTCCTGAACAGGAACGCATCGAGGTTGCTTGTTGAATCCTTTTGTCTCAGTTCCTTCTATGTTTTTTCCCACTAGATGCAAGCAGGTAGATACAACTCAATTCTGACAGTTATCTTTCTCTTTTTTACAGCTGGGCTACAGGGATTTTTTGCAGGCACCCCTGCAGGTTAGCCTCTTTTCATAAGTAATACTGATTTCTGCCTGTTCATCATAATGATTTACCCCATATGAAAATGCTCTATTCTTACTGTATAAATGCTCTATTCTTACTGTAAATATACTCTATTCTTACTGTAAAGAGCCTCTACTGTTCTTTTAATGAATACAGCCTCTTATGGACAACCTTGAAGCCCAAACCTATGAGACGTTTGAGAGAGACTCTGTTAAATACATCCAAGTACGTTGCATATGCTAGATTTTCCCCCTTACATCTTAAATTTTAACACCTTTGGTTTCTAGATTTTCCCTCTTCTATTTCTGCTTTGGTTTGCAGAGGAGAGTGGATTGATGGATGAATCATGTTGAACAAGTCAATATTGTACCAATATTTAGCCTGGTTGTTTTTTTAAAACATACTTAACTGTCGTCCATCTTTGTGTTGTTAGTATCAAAGAGCAGTTGAGAAAGCCTTGTTGGACAGGGTACCTGATGAAAAAGCATCCGAGTTGACTACTGTATGTCACATGTCGTGTTTTGCTTACAAAGTGGCATTTTTATTGATGTTGTGTTTCTGGTATTTCTATGAAATACTTCAGTAGGACTAAAGTTTCATTTTTTAGGTCTTGATGGTTGTAGGGGCAGGAAGAGGACCCCTTGTGAGGGCATCGTTACAGGTAAATTCCTGATGCAATTCCATGCTGATCACAAGGAGACGTTGAAATTCATTTGTTTCCTTAACCTATTGTGTTCATTGTTTCCTTTCCCAGGCAGCAGAAGAAACTGATCGGAAGTTGAAAGTTTATGCGGTGGAAAAGAATCCTAATGCAGTTGTAACACTCCATGTGAGTTGTCAGCACCGAGTCAATTTAAACATGGCTAATATTTTTAATTGTGATTTCTTTCAGACGTGCGTTGTAGTTTCTAATTAACTCAGAGCATTGTTATCCTTTCTGACAGAATTTGGTTAAGATGGAAGGATGGGAAGACATTGTTACGATAATATCCTGTGACATGCGTTTTTGGAATGCTCCTGAGCAAGCTGATATATTGGTCAGTATGTACAGATTTTTGTAGCTAATACTCATGCCGACATTATACAGTTCATCTAATTCTCGTTTGCCTCTTCTATGCAGGTTAGCGAACTGCTGGGTTCTTTTGGAGACAATGAACTTTCTCCTGAGTGTCTCGATGGAGCCCAAAGGTTTCTGAAGCCAGACGGAATTTCTATACCATCCTCGTATGTGTACTCCTTCGCTTAGTTGAATTTCCATAAGAAAATCATCTGTCCTTTTGTTTCTCTAACTGGAGAAGAACATCATTATTACTTTTTCAGGTATACAAGTTTCATACAGCCTATAACAGCTTCGAAGCTTTACAATGACGTAGGTTCTTCTGCTGTTTGCTATGTGCTCTTAATCACAAGAAATTTCAGATTAACTCAAGTCTTTTTCATCCATTTGGCAGGTTAAGGCACATAAAGATCTTGCACACTTTGAAACTGCTTATGTTGTCAAGCTGCATAGTGTAGCAAAACTTGCCCCTTCTCAATCTGTGAGTCTCTTTCTGTCTGCAGCATTGTCTAATAGCTGAAAGTGTTCTCTTTGAATACATTTATGCATGTCTTGTCGATCTCTCCATCTCAGGAATTTTGGTTTGGTCTCAATTAGGTTTTCACATTTACTCATCCAAACTTCTCAACAAAAGCCAACAACCAACGGTATAAGAAGCTTCAGTTCAATCTACCAAGCGACGCTGGCTCAGCTTTGGTGCATGGTACCTGCTTTTTTCGAGTCTTTTTTTGTTTGTTAATGGAATTTTTCATCTACATTTTCCGTAATCTGAAACTGAATCTACTGCGATCATAACAGGATTCGCTGGCTATTTTGATTCCGTCCTTTATAAAGATGTTCATCTTGGGATCGAGCCTACAACAGCAACACCAAACATGTTCAGCTGGTAATGGCTCAATGTTTATAAATGGTGTTAAACAGTTAATTCGCTCTCTTCTATCGAACCTCTTACTTAATCCGAGATAATATCCTGTTCCTTTCGGCAGGTTCCCAATCTTTTTCCCATTGAGGAAGCCTGTGGAAGTTCACCCTGGTACTCCATTAGAAGTACACTTTTGGAGGTGTTGTGGTTCCTCAAAGGTAAAAAAAGCTGAAACCACAAAGATTCCACACAACTAACTCTCTTTGTCGAAAGAACTATTATTGATCCTCTGATGTTTGGGTTCAGGTTTGGTATGAATGGTCGGTGTCTTCACCTACTCCATCTCCAATGCATAACACCAATGGCCGTTCGTATTGGGTTGGCCTTTAGGATTAGAAACTTTGACTGATGATGAAAAAGTTATGTAATCTTATTGTTCTGTACTTTTATGTCACAAGAAAGACCAATGTTTACGAGTGAATTAAATCTCTTTTGACCTT
CDS Sequence
- >VIT_02s0025g00880
ATGCCGCTCGGAGAAAGAGGAGGATGGGAGCGCACCGAGTCCAGGTACTGCGGCGTTGAGACTGATTTCTCCAACGATGTTACTCATCTTCTCAACTTCAACATTTCCACCGGCGGTTTTGACTATATCCTCGCTCCTCTGGTGAACCCTTCGTATAGGCCGAGCTTGGTGGAAGGAAATGGTGTAGATACTCAGGTTCTTCCAGTCTCTGGCTCTGACTTAGTCTTGTCACCTTCTCAATGGAGCAGTCATGTTGTTGGAAAAATTAGTTCGTGGATTGACTTGGATTCTGAAGATGAGGTCTTGCGGATGGATTCAGAAACCACATTGAAGCAAGAAATAGCTTGGGCTACTCATCTCTCCTTACAGGCATGTCTTCTTCCCACTCCTAAAGGGAAATCGTGCGCCAATTATGCCAGATGTGTGAACCAGATCTTACAAGGGCTGACTACCTTGCAGTTATGGCTGAGGGTTCCACTGGTGAAGTCTGATGGTGATTCAATGGATGATACCTCAGAGGGACTGAATGATTCTTGGGAGCTGTGGAATTCGTTTCGCCTTCTTTGTGAGCATGACAGTAAGCTGTCTGTTGCTCTTGATGTTCTGAGTACACTACCCTCTGAAACTTCACTAGGGCGCTGGATGGGAGAGTCTGTGAGAGCAGCCATATTAAGCACTGATGCTTTCTTAACAAATGCTCGGGGTTATCCTTGCTTGTCAAAACGCCACCAAAAGTTAATAGCAGGATTTTTTGATCATGCTGCCCAGGTTGTAATTTCTGGAAAGCCTGTTCATAATCTTCAAAAGTCTCTTGATTCTAACACGGAGGGTACAGAGAAGAATCCTCTGCGGATATATTTGGACTATGTTGCTTTTCTGTTCCAAAAGATGGAAGCACTTCCTGAACAGGAACGCATCGAGCTGGGCTACAGGGATTTTTTGCAGGCACCCCTGCAGCCTCTTATGGACAACCTTGAAGCCCAAACCTATGAGACGTTTGAGAGAGACTCTGTTAAATACATCCAATATCAAAGAGCAGTTGAGAAAGCCTTGTTGGACAGGGTACCTGATGAAAAAGCATCCGAGTTGACTACTGTCTTGATGGTTGTAGGGGCAGGAAGAGGACCCCTTGTGAGGGCATCGTTACAGGCAGCAGAAGAAACTGATCGGAAGTTGAAAGTTTATGCGGTGGAAAAGAATCCTAATGCAGTTGTAACACTCCATAATTTGGTTAAGATGGAAGGATGGGAAGACATTGTTACGATAATATCCTGTGACATGCGTTTTTGGAATGCTCCTGAGCAAGCTGATATATTGGTTAGCGAACTGCTGGGTTCTTTTGGAGACAATGAACTTTCTCCTGAGTGTCTCGATGGAGCCCAAAGGTTTCTGAAGCCAGACGGAATTTCTATACCATCCTCGTATACAAGTTTCATACAGCCTATAACAGCTTCGAAGCTTTACAATGACGTTAAGGCACATAAAGATCTTGCACACTTTGAAACTGCTTATGTTGTCAAGCTGCATAGTGTAGCAAAACTTGCCCCTTCTCAATCTGTTTTCACATTTACTCATCCAAACTTCTCAACAAAAGCCAACAACCAACGGTATAAGAAGCTTCAGTTCAATCTACCAAGCGACGCTGGCTCAGCTTTGGTGCATGGATTCGCTGGCTATTTTGATTCCGTCCTTTATAAAGATGTTCATCTTGGGATCGAGCCTACAACAGCAACACCAAACATGTTCAGCTGGTTCCCAATCTTTTTCCCATTGAGGAAGCCTGTGGAAGTTCACCCTGGTACTCCATTAGAAGTACACTTTTGGAGGTGTTGTGGTTCCTCAAAGGTTTGGTATGAATGGTCGGTGTCTTCACCTACTCCATCTCCAATGCATAACACCAATGGCCGTTCGTATTGGGTTGGCCTTTAG
Protein Sequence
- >VIT_02s0025g00880
MPLGERGGWERTESRYCGVETDFSNDVTHLLNFNISTGGFDYILAPLVNPSYRPSLVEGNGVDTQVLPVSGSDLVLSPSQWSSHVVGKISSWIDLDSEDEVLRMDSETTLKQEIAWATHLSLQACLLPTPKGKSCANYARCVNQILQGLTTLQLWLRVPLVKSDGDSMDDTSEGLNDSWELWNSFRLLCEHDSKLSVALDVLSTLPSETSLGRWMGESVRAAILSTDAFLTNARGYPCLSKRHQKLIAGFFDHAAQVVISGKPVHNLQKSLDSNTEGTEKNPLRIYLDYVAFLFQKMEALPEQERIELGYRDFLQAPLQPLMDNLEAQTYETFERDSVKYIQYQRAVEKALLDRVPDEKASELTTVLMVVGAGRGPLVRASLQAAEETDRKLKVYAVEKNPNAVVTLHNLVKMEGWEDIVTIISCDMRFWNAPEQADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIQPITASKLYNDVKAHKDLAHFETAYVVKLHSVAKLAPSQSVFTFTHPNFSTKANNQRYKKLQFNLPSDAGSALVHGFAGYFDSVLYKDVHLGIEPTTATPNMFSWFPIFFPLRKPVEVHPGTPLEVHFWRCCGSSKVWYEWSVSSPTPSPMHNTNGRSYWVGL