Information report for fgenesh2_kg.8__1654__AT5G57380.1
Gene Details
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Functional Annotation
- Encodes a plant homeodomain protein VERNALIZATION INSENSITIVE 3 (VIN3). In planta VIN3 and VRN2, VERNALIZATION 2, are part of a large protein complex that can include the polycomb group (PcG) proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF), and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization.
Homologous
- Brassica napus: BnaA06G0406800ZS, BnaC03G0129200ZS, BnaA02G0118200ZS, BnaA03G0112400ZS, BnaC02G0145400ZS, BnaC07G0495000ZS, BnaA03G0516300ZS
- Brassica oleracea: Bo3g019340, Bo2g032410, Bo7g114310
- Brassica rapa: Bra020445, Bra006824, Bra024097
- Gossypium hirsutum: Gohir.D05G005000, Gohir.A05G004280
- Populus trichocarpa: POPTR_006G167800v3, POPTR_018G091500v3
Gene Resources
- Pfam: PF00041 PF07227
- UniProt: D7MN96
- EMBL: GL348720
- AlphaFoldDB: D7MN96
- KEGG: aly:9300593
- InterPro: IPR003961 , IPR013783 , IPR032881 , IPR036116 , IPR044514
- PANTHER: PTHR46286 , PTHR46286:SF7
- SUPFAM: SSF49265
- PROSITE: PS50853
- Gene3D: 2.60.40.10
- OrthoDB: D7MN96
- CDD: cd00063 , cd15521
- eggNOG: ENOG502QR8D
- STRING: 81972.D7MN96
- HOGENOM: CLU_016873_0_0_1
Sequences
gDNA Sequence
- >fgenesh2_kg.8__1654__AT5G57380.1
AAATCATGCCTATTCATTTTTGAGGTTTTCACTAGACATCAGAAAGAAATTGGAAATGTGTACTTACATAATTTCACTTCAAAATATCGTTATGGTGTAGAATATCAAGAAAGTTAATAAATAGACCGATTTCAAAAGCATTAATGCCAAAGCTTGAGGCAGATTCCAGCAGGTACAACACCACTTGTTGATGATCTTTTGCTCACTATGCATTCTGAGAATGTATCCACAAGCTGTTCTCCCAAAGAAGGCAGATCCTCCACAAAGGTCTCAACAAAAATCTTCACAACTCTAACTTCTCGGTGAGTAGCTCTTAAACTATACCATGTCAAGAACCTTTCCCTAAAACTCTTGTCTATATGTCCTTCTTGCTCTAAACATCTAATCGTCTTCACAATTTGACCCAAGTCTTTATCTCCTACCCCATTTGCGGCATTATTGATCTCAGGTTTCTCGTTCACCGATATTGTTCTTGATTTGAATCTTTTATTCCCTCCTTGCTTCCCCTTAGAAATATCTCTTTTGCAGGGTGTTACAAGCAAGTCTCTTCCATCTATCTTGTTAGCTTTCCTCTTTACAAGCCTCTCTTCTTCAAGCTTGGATTCTACTTCTCCTGCACTACAGTGTTCGGTGTTGTCCTTGTTACCGTTTTCTTCGCTGCAGCTCTTATGGACATTATTAGATTCATCTTCGTGCAAAGATGGATTACTACAAAGACCACTGCTTGAGTTTGTCAAAGGGCTTTGCCGGTCCCGAGCTTCATCTATATTGTCTTTCAATGTTGAGAACTGAAGCTCGGACTCATCTAAGTCACCTTCCTTGTTAAAGGACACGACTCTGAGACAGAACTCGGTGTCGGGTTCAAGTCCTTGGATGGTAGACCTTGTTTCAGGTAGATACGCAACACAGTTCACCTCAGACGAGCACTCTTCGTCCTTCGACTTTCGACAAAACACCCTGAAACCTGTGATCTGGTTTTGTGTAGAAGAAGACGGCACCTCGGACTCTAATCTCACAGTGACTGATCTTGCTTGAATCTCTTCTACTATCACGGTCATCTTGTCAACTAACGAGAACTAAAGTCAACATCTTCGACTTTAAAACAAAAGTAATGTATGAACACACTAACCTTGTCCTGAAACAGATTCCGATGGTGAGACCACTTTGTCCAGAGCTTCCATTGCCTGAGAACACAGCTTCTGGACTTGTGATCCCGACGAAAGTCTATTGACGATACCTCGAGCCATCTTCATCGCCCAACCCGACAACGGACCCACATCACCTTCGAGCTTCTTCACCGCCTCATCCATGAGTTCCAAAAGATTCCGATACTTCCTTGTTCCTCTCAACAGCTTTTGTCCTAAAGAAAGACGATAACAAAGTATATCCACACGGCGTGTCTCTTTCGCCACCTTCACTTGTTTCCTCCAGCATCTGTAAGCACTCGCATACACACACACACACACACACACACATTACATTACATTATCCAAACATTCTCTTTTCATTTGTATATCCATCATAGATTTCAATATCGAAAGAACCTTACCCGAGCAAGTCATTATCTTTGCCGCAATACGCGCAATAAAACCTACAATCAAGATCATCACTCCCAATCCCATACCTATCTTGCTTCAAACCACATTCCAAATGACAAGACGATCCACAAGCCTCACAAGTAAGCCATAAACTCGGATCCTTATTATCATCAAACTTTTGACAAATGCAGCAAGAACACCTTCTGCAAAAAGTATCATCGCTTCCAAGCGCAGCTCTACAAGCTAAATTCTCACAGCAAATGATGTAACCGATCATCTTCTTCTGCTTCTTCCTCGAGTTTCTACGGTCAGAATAAGAAGTCTCTCCAAGAGGACGAGACACAAGATTGAGTAGATTCTCAATGAGTTTTGGTTTGTTCAGACCAGTGTACTTCCTCTCTTTACCCATCTCAGCACATATGATCTTCATTATCTCATTTCTGCTCCATGAATTCAAAAGCTCGGAAGCTTCTTGTGGCTGGTTAGACAATGCGTGGATCAATTCTCTCCTTTCACTTACATTCAAAACGTTTGGTTTACAAGTCTCAATGCATTCATTATCTGCACCAACCATAAAAGACCAATCTTTTAACCCTAAAAATCTCCTCAAGATAAAAAAAAGGAGAGGATCACCATTTTCTGAATCTTTTTTTTGGGTAAAAATTATGAAAAAAGTTTGAATGAATCTCAACAACCCAGAAACAAAATGACGACGAATCCAATGCGAGAGAAATAAACGTTTGTTGATATTGAATAAAACGGCGTCGTGTTAACGCCCTAAAACGCATGAAACTAGGAACAGTGAGAGAGACGTTCACGTCGAGAAAATATCGTACCTTGAAATGGAGAAGAATCCATGTTCTCTGGACCCACATTTCCATCAAAACGCCAGGTCTTTGAGAGCTGCAGAGATCCGATTTCAGACTAAAGGTTTGATTATGTCAAAGTTAAAGCAAGAACCAAAAAAACCATCACAACAATCCGAGATATAGTTCAGACAACGAAAAAAATGTAACAGAACTTACGGTGATGAAGAACAATCAAGATCGAATTATTTTTTTCGAATTTTGTTTTAAAGTTTTAATCTTTAAACAAGCCAAAGAGATCCCATGAAATACTCCCCCTCTCTCTCTGTGTAAGAACTAAGAACTTATATTCGAGGATGACTCGGTCTTAAGAACAAATATTTGATAATTTCTTGGATTAAAAAAATAAATACTGAGAGAGTAAATAAATATGTAAAATAAATTAAGCAAAAACGAGATTGGTTGGTTGTTTACGAATGAGAAACCTTCAAAACAAATATAACAAAATACATTAAAAAAAAACGCTATTTACCGAAGCAGCTTGCATTTTTTTTCGTTCTTCGTGTTCTTCGTTTTTTTCTCTGATTTTTTTCTTTCTTTCTAGGTTTAGTTTAGAGATCTTTAATGGGGAATTTGTACAAAGGAAAAGATGTTTCTCTGGTGGTTCTTCTCTCTCCTTTTTTTTTTTCTAGATGTTTCTAAGAGGAAACCCTCTAAGGGATGAAACTTCTGCTCTGAG
CDS Sequence
- >fgenesh2_kg.8__1654__AT5G57380.1
ATGCAAGCTGCTTCGCTCTCAAAGACCTGGCGTTTTGATGGAAATGTGGGTCCAGAGAACATGGATTCTTCTCCATTTCAAGATAATGAATGCATTGAGACTTGTAAACCAAACGTTTTGAATGTAAGTGAAAGGAGAGAATTGATCCACGCATTGTCTAACCAGCCACAAGAAGCTTCCGAGCTTTTGAATTCATGGAGCAGAAATGAGATAATGAAGATCATATGTGCTGAGATGGGTAAAGAGAGGAAGTACACTGGTCTGAACAAACCAAAACTCATTGAGAATCTACTCAATCTTGTGTCTCGTCCTCTTGGAGAGACTTCTTATTCTGACCGTAGAAACTCGAGGAAGAAGCAGAAGAAGATGATCGGTTACATCATTTGCTGTGAGAATTTAGCTTGTAGAGCTGCGCTTGGAAGCGATGATACTTTTTGCAGAAGGTGTTCTTGCTGCATTTGTCAAAAGTTTGATGATAATAAGGATCCGAGTTTATGGCTTACTTGTGAGGCTTGTGGATCGTCTTGTCATTTGGAATGTGGTTTGAAGCAAGATAGGTATGGGATTGGGAGTGATGATCTTGATTGTAGGTTTTATTGCGCGTATTGCGGCAAAGATAATGACTTGCTCGGATGCTGGAGGAAACAAGTGAAGGTGGCGAAAGAGACACGCCGTGTGGATATACTTTGTTATCGTCTTTCTTTAGGACAAAAGCTGTTGAGAGGAACAAGGAAGTATCGGAATCTTTTGGAACTCATGGATGAGGCGGTGAAGAAGCTCGAAGGTGATGTGGGTCCGTTGTCGGGTTGGGCGATGAAGATGGCTCGAGGTATCGTCAATAGACTTTCGTCGGGATCACAAGTCCAGAAGCTGTGTTCTCAGGCAATGGAAGCTCTGGACAAAGTGGTCTCACCATCGGAATCTGTTTCAGGACAAGTTGACAAGATGACCGTGATAGTAGAAGAGATTCAAGCAAGATCAGTCACTGTGAGATTAGAGTCCGAGGTGCCGTCTTCTTCTACACAAAACCAGATCACAGGTTTCAGGGTGTTTTGTCGAAAGTCGAAGGACGAAGAGTGCTCGTCTGAGGTGAACTGTGTTGCGTATCTACCTGAAACAAGGTCTACCATCCAAGGACTTGAACCCGACACCGAGTTCTGTCTCAGAGTCGTGTCCTTTAACAAGGAAGGTGACTTAGATGAGTCCGAGCTTCAGTTCTCAACATTGAAAGACAATATAGATGAAGCTCGGGACCGGCAAAGCCCTTTGACAAACTCAAGCAGTGGTCTTTGTAGTAATCCATCTTTGCACGAAGATGAATCTAATAATGTCCATAAGAGCTGCAGCGAAGAAAACGGTAACAAGGACAACACCGAACACTGTAGTGCAGGAGAAGTAGAATCCAAGCTTGAAGAAGAGAGGCTTGTAAAGAGGAAAGCTAACAAGATAGATGGAAGAGACTTGCTTGTAACACCCTGCAAAAGAGATATTTCTAAGGGGAAGCAAGGAGGGAATAAAAGATTCAAATCAAGAACAATATCGGTGAACGAGAAACCTGAGATCAATAATGCCGCAAATGGGGTAGGAGATAAAGACTTGGGTCAAATTGTGAAGACGATTAGATGTTTAGAGCAAGAAGGACATATAGACAAGAGTTTTAGGGAAAGGTTCTTGACATGGTATAGTTTAAGAGCTACTCACCGAGAAGTTAGAGTTGTGAAGATTTTTGTTGAGACCTTTGTGGAGGATCTGCCTTCTTTGGGAGAACAGCTTGTGGATACATTCTCAGAATGCATAGTGAGCAAAAGATCATCAACAAGTGGTGTTGTACCTGCTGGAATCTGCCTCAAGCTTTGGCATTAA
Protein Sequence
- >fgenesh2_kg.8__1654__AT5G57380.1
MQAASLSKTWRFDGNVGPENMDSSPFQDNECIETCKPNVLNVSERRELIHALSNQPQEASELLNSWSRNEIMKIICAEMGKERKYTGLNKPKLIENLLNLVSRPLGETSYSDRRNSRKKQKKMIGYIICCENLACRAALGSDDTFCRRCSCCICQKFDDNKDPSLWLTCEACGSSCHLECGLKQDRYGIGSDDLDCRFYCAYCGKDNDLLGCWRKQVKVAKETRRVDILCYRLSLGQKLLRGTRKYRNLLELMDEAVKKLEGDVGPLSGWAMKMARGIVNRLSSGSQVQKLCSQAMEALDKVVSPSESVSGQVDKMTVIVEEIQARSVTVRLESEVPSSSTQNQITGFRVFCRKSKDEECSSEVNCVAYLPETRSTIQGLEPDTEFCLRVVSFNKEGDLDESELQFSTLKDNIDEARDRQSPLTNSSSGLCSNPSLHEDESNNVHKSCSEENGNKDNTEHCSAGEVESKLEEERLVKRKANKIDGRDLLVTPCKRDISKGKQGGNKRFKSRTISVNEKPEINNAANGVGDKDLGQIVKTIRCLEQEGHIDKSFRERFLTWYSLRATHREVRVVKIFVETFVEDLPSLGEQLVDTFSECIVSKRSSTSGVVPAGICLKLWH