Information report for fgenesh2_kg.7__3369__AT5G40490.1
Gene Details
|
|
Functional Annotation
- HLP1 is a member of the conserved hnRNP A/B family and contains RNA Recognition Motifs (RRM).It binds mRNA and appears to be involved in targeting alternative polyadenylation (APA). APA targets include genes involved in flowering. Loss of HLP1 function results causes late flowering under long and short day conditions. This phenotype is suppressed by loss of FLC.
Homologous
- Actinidia chinensis: CEY00_Acc03772
- Brassica napus: BnaC04G0405400ZS, BnaA04G0118400ZS
- Brassica oleracea: Bo4g140290
- Brassica rapa: Bra025568
- Citrullus lanatus: Cla97C10G196620
- Cucumis melo: MELO3C026584
- Cucumis sativus: CsGy3G037790
- Glycine max: Glyma.05G003400
- Manihot esculenta: MANES_15G150900
- Medicago truncatula: Medtr6g004810
- Nicotiana attenuata: A4A49_34905
- Populus trichocarpa: POPTR_001G344900v3
- Prunus persica: PRUPE_3G292100
- Solanum lycopersicum: Solyc02g093340.3
- Vitis vinifera: VIT_14s0066g00480
Gene Resources
- Pfam: PF00076 PF05172 PF12108 PF14605 PF16367
- UniProt: D7MJ69
- RefSeq: XP_002870699.1
- EMBL: GL348719
- AlphaFoldDB: D7MJ69
- InterPro: IPR000504 , IPR012677 , IPR035979
- PANTHER: PTHR48033 , PTHR48033:SF5
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- OrthoDB: D7MJ69
- eggNOG: KOG0118
- STRING: 81972.D7MJ69
- HOGENOM: CLU_012062_1_2_1
Sequences
gDNA Sequence
- >fgenesh2_kg.7__3369__AT5G40490.1
AAACTCAAAAGCGTTGATACAAGCTAACTCTAAAGTTGCCACAAGAATTCTAAGCAAAATAATAATCTGGCATTGTAACGCCGAGATAATTATATCTAAAAATGTATTGATTAAAACTACTCAGGGGAATCAAAGCCCTAAAAGCCTCCTCTCTCAGAATACAATGACTAGCTATCAATCTTGATAACCATACATGAAACTAAGCATGACACAACAAGTAAGAAGAAGAAGATTCAAGCTTTTATTGAACTCTCTACCTTCCATAAGGATGGTACCGTCCACTGCCGCCTCCATATCCACCTCTACTTCCTCCTCCTCCTCCATAAAATGAGCCTCCACCGTTTCCGCCACCACCAGCACCGTATCCTCCTGCGCCTCCACCTCCAACTCCACCCATATCATAGCCACCACCTCCTCTATAGCCTCCGCCACCAGCACCACCATACCCACCAATGCCGCTACTGCCATATCCACCTCCATAACTGCCACTTGGTCCACCGTAACCACCTCCAGGTTCACCGTATGGCCCACCATACATATCACCCGGCCCACCACCGTACCCTCCGCCTCCTCCCATGCCATAACCACCTCTGTTGTAACCACCGCCGCCTCCTCCTCCATAACGACCAGAATATCCAAGTGCTGGTTCTCCTCTATAAGGTCCCACGCCACCACCATATCCACCACCACCATACCCGCCGAATTCTCCTCCGTACCCTCCATAACCACCAGACCGGCCACCTCCATAACCGCCACCACCTGATTTGTAAGGACCACCTGGACCACCATAACCATCTCCATAACCATCTCCATAACCATCTCCATAACCTCCACCAAAGTTAGAGCGAGAATCACCAAACCGCTTTGACGGGGTTGTAACTGAGTTTGGTTTTTTTGGCTCCGCCTTCTTTATCTCTACCTATACGAGAAACCATAGACAATTCAGTAAAGTAACAGGGCAGATGCGACTGTACTGATTATAGCTACAAAGTCTTATAATCTTAAGACTATCTGTAAGAGCGTGCAGTTACCTGAGTCCCTGAGAGCTCAATTCTGTTCCCTTTTGCCAAGAGATGATCAACCATATCTTCACTTTCATATGTAACAAACCCAAAGCCACGTGATCTTCCAGTTGAGTGATCACGCATAATCTGATGTTCCTTCAGCTCTCCAAATTGCATAAAGAATTCCTTGAACTCATCTATACAAACACCAATCACCAGATGAGACACCTGGTAAATAAAAACATGATTCTGAAATCATATGATACAGATATGGGATAGTATGGAAGAGTGTTTACCATCATCTACAGAAGCAGGAATTCCACCAACAAATATCTTTTTAGTTTTGAAATCGTTAGAGCTCATGGATCCTCTTGGTATCGTCCGCTTAATTTCAACCTGAAGAGCCATAAGAAAAAGTGAATGTTATCACATTGCAAGCCACAACACAACTTACCCACTTAAGATGTAAGGCACAGCTCAAACTAACCTGCTTGCCAATTATAATGTGATTGTCTTGGATAACTTTGTCGACCACAGAGGAATCAGCATATGTCACAAACCCAAATCCTCGGGGCTGTCCAGTTTTCCTATCCTTCATAATCACAGAATCAGTGATCTCTCCATATTTCCCAAAATGCTTGAGGAATTCAGCTGCATAAGCAAATCAAAAGCCAGAGTTAAAAAAGAATTGAACTTTACACAATAACGAGAACGCTAACCTCTGACAATGTGGCAACCAAGACTCAAGAGCTAACCTGAAGTTGTCTCCCTGGCTAAACCTCCAACAAATATCTTTCTACAAATTCCACAAAACATCGTATAAGTACACTAATCACTAAGTATTAAGAAACCAGAGAAGAGCACTAATCTTATCCTTCTCCAACAAGTTCGAATCTTTATACTTTCTATCTCAATTTTCACAGAGCTAAGAGAAAAAGATGAGTAATTTAGAAAACCCTAGAAGAATCGAAATATAAAGCTTCTTCCTTTATCACAATCTTCTTGAAATAAAGACCCAAACCCTAATTCCTGAATCTAGAATCTTTTAAGAAGAAAGTGAGGAAACGTACCCAGCACTATCGACGCCACCACCAGAGTGAGGCTGAGATTTGTCGTCATCGTCTTCAATATCTTCGGATGGTTTAGCATCGTGGATTTCATCTTCGATAACTGTTTCCGTTCCATAAGGATCCATAACGAAGAAGAAAGAAGAAGAAGAAACCCTAAAACCTCCGAGAACGAAGAAGAAGAAGAAGAGAAGCGGCAGCCGCCTAAAAGCCGTGTAATGCAGTAAGCAAGCCCTAAAACCCTTGGAGAAGAGAA
CDS Sequence
- >fgenesh2_kg.7__3369__AT5G40490.1
ATGGATCCTTATGGAACGGAAACAGTTATCGAAGATGAAATCCACGATGCTAAACCATCCGAAGATATTGAAGACGATGACGACAAATCTCAGCCTCACTCTGGTGGTGGCGTCGATAGTGCTGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAATTCCTCAAGCATTTTGGGAAATATGGAGAGATCACTGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGATTTGGGTTTGTGACATATGCTGATTCCTCTGTGGTCGACAAAGTTATCCAAGACAATCACATTATAATTGGCAAGCAGGTTGAAATTAAGCGGACGATACCAAGAGGATCCATGAGCTCTAACGATTTCAAAACTAAAAAGATATTTGTTGGTGGAATTCCTGCTTCTGTAGATGATGATGAGTTCAAGGAATTCTTTATGCAATTTGGAGAGCTGAAGGAACATCAGATTATGCGTGATCACTCAACTGGAAGATCACGTGGCTTTGGGTTTGTTACATATGAAAGTGAAGATATGGTTGATCATCTCTTGGCAAAAGGGAACAGAATTGAGCTCTCAGGGACTCAGGTAGAGATAAAGAAGGCGGAGCCAAAAAAACCAAACTCAGTTACAACCCCGTCAAAGCGGTTTGGTGATTCTCGCTCTAACTTTGGTGGAGGTTATGGAGATGGTTATGGAGATGGTTATGGAGATGGTTATGGTGGTCCAGGTGGTCCTTACAAATCAGGTGGTGGCGGTTATGGAGGTGGCCGGTCTGGTGGTTATGGAGGGTACGGAGGAGAATTCGGCGGGTATGGTGGTGGTGGATATGGTGGTGGCGTGGGACCTTATAGAGGAGAACCAGCACTTGGATATTCTGGTCGTTATGGAGGAGGAGGCGGCGGTGGTTACAACAGAGGTGGTTATGGCATGGGAGGAGGCGGAGGGTACGGTGGTGGGCCGGGTGATATGTATGGTGGGCCATACGGTGAACCTGGAGGTGGTTACGGTGGACCAAGTGGCAGTTATGGAGGTGGATATGGCAGTAGCGGCATTGGTGGGTATGGTGGTGCTGGTGGCGGAGGCTATAGAGGAGGTGGTGGCTATGATATGGGTGGAGTTGGAGGTGGAGGCGCAGGAGGATACGGTGCTGGTGGTGGCGGAAACGGTGGAGGCTCATTTTATGGAGGAGGAGGAGGAAGTAGAGGTGGATATGGAGGCGGCAGTGGACGGTACCATCCTTATGGAAGGTAG
Protein Sequence
- >fgenesh2_kg.7__3369__AT5G40490.1
MDPYGTETVIEDEIHDAKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPASVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYGDGYGDGYGGPGGPYKSGGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGGYNRGGYGMGGGGGYGGGPGDMYGGPYGEPGGGYGGPSGSYGGGYGSSGIGGYGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGGGSRGGYGGGSGRYHPYGR