Information report for fgenesh2_kg.1__1815__AT1G16610.2
Gene Details
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Functional Annotation
- Encodes SR45, a member of the highly conserved family of serine/arginine-rich (SR) proteins, which play key roles in pre-mRNA splicing and other aspects of RNA metabolism. SR45 is a spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. Also involved in plant sugar response. sr45-1 mutation confers hypersensitivity to glucose during early seedling growth.
Homologous
- Brassica napus: BnaC08G0236200ZS, BnaA08G0265500ZS
- Brassica oleracea: Bo8g066720
- Glycine max: Glyma.15G255400, Glyma.08G172000
- Juglans regia: Jr09_00760, Jr09_00770
- Manihot esculenta: MANES_06G171800, MANES_14G016200
- Populus trichocarpa: POPTR_011G143100v3
- Prunus persica: PRUPE_4G139800
- Solanum lycopersicum: Solyc10g005590.3
- Solanum tuberosum: PGSC0003DMG400011240
- Vitis vinifera: VIT_19s0027g00590
Gene Resources
- Pfam: PF00076
- UniProt: D7KEH2
- RefSeq: XP_002892916.1
- EMBL: GL348713
- AlphaFoldDB: D7KEH2
- InterPro: IPR000504 , IPR012677 , IPR034201 , IPR035979
- PANTHER: PTHR15481 , PTHR15481:SF0
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- CDD: cd12365
- eggNOG: KOG0118
- STRING: 81972.D7KEH2
- HOGENOM: CLU_055032_1_0_1
Sequences
gDNA Sequence
- >fgenesh2_kg.1__1815__AT1G16610.2
ATCTAATGGGGAGATCCACAAAAGAAGATTAAAACATCCAAACACTACAAAAGCCACAACTCTCATCTGGTCACTGTATGATAAAGATAAAGATGGAGAAAGAGAGCTACATGAAGACTCAAGTTTTTTTTTTTTTTGAACATTTTTTTATTATCTTAAGTTTTGCGAGGTGGAGGTGGTGGTGGCGGTGAACTGCTGCTGCTGCTGTTACTGCTGCTTCTTTTTCCTCTCAGTGGCCTATACATACCCAACAACAACCCATTTTCTTTTATTAGACTTCAACGCAAAAAATATCCACACAACAATTCTAAGAAAGTGTAGGTTCCAGATGTTTAAGGTACGTCTTTTATCAGGAATTGGAGTAACCTAAACTTTACTACACATAACTCAAGCGTGGAACTTCTTCAGCTAATCAATTCGACAGACTAAAGTGTTTCCAGTTTAAGAAAAGGATTAGTTTTAAGACAATAGAAAGTGTTTACCTCCTAGGACTGCGGCTCCTTGAAATCTTCCTAGGAATCTGTAAAGGTTTAATAATGCACACAAGATAGAAAGTCAAAACACATATAACTCACCAAGGCATCAACATTTTTATAGCTAAACAGGGATCTGCAAGAAGCCCTTACCCTTCTGGGACTTGGCGAACTAGAGTAAGAAGATGACCTCCCACGTCTCCCAGCTGGACCTCGTCCCCTGCTTACAGTTAAAGACAAAATTACATCATCAACTAACTCCACATTGGTCTACAACTTAATCATATTTGCTATCAACGTCACATGGAGCTGGTATGTCACAAACCTACATATAAGGATAAGACAGAGTAGGATCTTGGGGTATACTCATGAACTAAGAAAGACTTACAAACTTGTTATGAATTAATATCATTACATATACTATCTTAGCTATGCATCTGCAACAAAATAAAGCCCAGGAGATACCAAAGATAACCCTAGCAAAAATTTTAAATGAGTTATAACATACCTGCGGGGTGAGATGGACCTTGAACGAGAGCGACCAGGCCTACGAATTGGGGATCGGCTACGCCTGCGGATTGGAGATCTTCTGGGTGGACTGCGTAGTCTCCTTGGAGGTGGAGACCTGAAACAAGCCCAATACAAAACATATATAAAACTGACACATTTTTCCAGGTCTAATTAATTCAACATTATATTCTCTAAAGCTGTAATTCCTAACATACGATTACTAAGGGTGTAATTCGGGTACTAAATACACATACCTTCGTCTCATAGGAGGAGGAGACCGTCTTCGAACAGGACTGCCACGGATTCTTCTAGGGGATCCCCTGCTGACAAATGAAAGGTGAGCTACCGATTCTGAAAACACCAGACAAAACAGATGGTGCCACAACTAACCTTGGAGGAGATCTATTTCGTCTTGGAGGCGGAGAAGATGGAGAACGGCCTCTAGATGGTGATGCTGGCCTGCGCCTGGGCGGTGTATCACCGCGACGACGGATAGGAGAGCCCGGCCTCCGGCGATGGGGAGAATCAGGAAATCTCCTAGGTGATAAGCCTCTCCTAGGTAGAGGTGATCGCCTTCTCGGAGAAAGTCCTGTTTTCCGTTGAGGAGATGCTAAGCACATATTGATGATAATAAATAACACAACATAAAGAATAGACTACATCAGTAACAAATAACCAAAATATAAAACATAGACATACTCTCTCTTGGGCGCCTGGGCCCATCTTTTTCAGTGTCAGCACCAGCATTATCAGATTTAGGAGCATCTCTTTTTGGTGCAGTTGAGACAGGTTTAGGCGGTGAAGATACTTTCTGACGAGGTGGTAGTGTGAACGTTGCTTTAACAACCTTTCCATCAATTTGGCCCTGCGTTCAGTAAACAAAAAAATAACACATGCATAAATCTTCTTGGCCAACATGTCAAGGACAGTGCATTTCATATTTGGAAAGAGACATACACCATCCATGAACAGCTGTGCTTTCTCAGCATCAGCTCTTGCCTTGAACTCAACATAAGCATGTCCTTTTGGAAGATTAACCTGTTAATATTCAGAGGAGTTATGAGCAGATTTCAACAAGTGGACAACAGAGGGTAATGATATAGCAACTTACAGATCGATCTATGGCAATTTCGACGTGTATAACTTCACCAAAGTTGCCTAATAACATGAAAACAAGCCATGTGTTATAAGACTTAAACATTTAGCCAACACAAGCAAGAAAAAATACCAGTGATGATCGTAATGACGTATATACTACTGATGACATTAGAGCTCTGGTGTACTCAGTTATCATGTAATAAAATGAGAAGAAGCAGAAGAAACACAGAAAAGAGAAATCACCATACCAAATATTTCTTTGAGATGGCCTTCATTCACATTCCTGCTAAGAGAATCAACATAAAGAACAAGAGATTCTTGAACAGCTTTCCTGAAAGCATAATAGATTGTAAAGTCAGCAAAATTGACGAAAGCATAAACACTAGAATATATGTGTAACGAGTCAGATATTACTTAGAAGGTGAAGATGCTCTTTTAGATTGTGGAGGAGGAGGAGGAGGAGAGCGACCTCGCCTAGCAGGTCCAGCAGGACTACACAAGAAGATATATCAGAACATCAATTCAAATTCAAGCTGAAGAAGAAGTCAGTTACAAACTTGTTCCAACGACGACGAACCAAGAAGAATGAAAGCCAAATTACACAAATCCAATTCGAAAATTGGTAATTGTTTGAAAGAAACCCTAACCTCTTTCCACGAGGAGGAGGACTGCGACTCCCAGAACTGACGCTCCGGGAAGGAGATGAGGATGAAGAGAGCGATCTAGACCGGGAGCGGGAGCGGGAGCGGGAAAGAGACCTGGAGGGACTAGAACCGGAGCGGGAACGAGATCTGGAACTGGAACGAGATGATGAGCCAGACACGGAAGGGGAACGACGGCCACGACTTGGTTTCGCCATGGGCGATACTCGAGAAAATCGCGAGAAACCTTGCTTCAAAACCCTAGCGGATAAAAAAGATTAGAGGAGAGCGACGGAC
CDS Sequence
- >fgenesh2_kg.1__1815__AT1G16610.2
ATGGCGAAACCAAGTCGTGGCCGTCGTTCCCCTTCCGTGTCTGGCTCATCATCTCGTTCCAGTTCCAGATCTCGTTCCCGCTCCGGTTCTAGTCCCTCCAGGTCTCTTTCCCGCTCCCGCTCCCGCTCCCGGTCTAGATCGCTCTCTTCATCCTCATCTCCTTCCCGGAGCGTCAGTTCTGGGAGTCGCAGTCCTCCTCCTCGTGGAAAGAGTCCTGCTGGACCTGCTAGGCGAGGTCGCTCTCCTCCTCCTCCTCCTCCACAATCTAAAAGAGCATCTTCACCTTCTAAGAAAGCTGTTCAAGAATCTCTTGTTCTTTATGTTGATTCTCTTAGCAGGAATGTGAATGAAGGCCATCTCAAAGAAATATTTGGCAACTTTGGTGAAGTTATACACGTCGAAATTGCCATAGATCGATCTGTTAATCTTCCAAAAGGACATGCTTATGTTGAGTTCAAGGCAAGAGCTGATGCTGAGAAAGCACAGCTGTTCATGGATGGTGGCCAAATTGATGGAAAGGTTGTTAAAGCAACGTTCACACTACCACCTCGTCAGAAAGTATCTTCACCGCCTAAACCTGTCTCAACTGCACCAAAAAGAGATGCTCCTAAATCTGATAATGCTGGTGCTGACACTGAAAAAGATGGGCCCAGGCGCCCAAGAGAGAGACTTTCTCCGAGAAGGCGATCACCTCTACCTAGGAGAGGCTTATCACCTAGGAGATTTCCTGATTCTCCCCATCGCCGGAGGCCGGGCTCTCCTATCCGTCGTCGCGGTGATACACCGCCCAGGCGCAGGCCAGCATCACCATCTAGAGGCCGTTCTCCATCTTCTCCGCCTCCAAGACGAAATAGATCTCCTCCAAGCAGGGGATCCCCTAGAAGAATCCGTGGCAGTCCTGTTCGAAGACGGTCTCCTCCTCCTATGAGACGAAGGTCTCCACCTCCAAGGAGACTACGCAGTCCACCCAGAAGATCTCCAATCCGCAGGCGTAGCCGATCCCCAATTCGTAGGCCTGGTCGCTCTCGTTCAAGGTCCATCTCACCCCGCAGGGGACGAGGTCCAGCTGGGAGACGTGGGAGGTCATCTTCTTACTCTAGTTCGCCAAGTCCCAGAAGGATTCCTAGGAAGATTTCAAGGAGCCGCAGTCCTAGGAGGCCACTGAGAGGAAAAAGAAGCAGCAGTAACAGCAGCAGCAGCAGTTCACCGCCACCACCACCTCCACCTCGCAAAACTTAA
Protein Sequence
- >fgenesh2_kg.1__1815__AT1G16610.2
MAKPSRGRRSPSVSGSSSRSSSRSRSRSGSSPSRSLSRSRSRSRSRSLSSSSSPSRSVSSGSRSPPPRGKSPAGPARRGRSPPPPPPQSKRASSPSKKAVQESLVLYVDSLSRNVNEGHLKEIFGNFGEVIHVEIAIDRSVNLPKGHAYVEFKARADAEKAQLFMDGGQIDGKVVKATFTLPPRQKVSSPPKPVSTAPKRDAPKSDNAGADTEKDGPRRPRERLSPRRRSPLPRRGLSPRRFPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRNRSPPSRGSPRRIRGSPVRRRSPPPMRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSRSISPRRGRGPAGRRGRSSSYSSSPSPRRIPRKISRSRSPRRPLRGKRSSSNSSSSSSPPPPPPPRKT