Information report for fgenesh1_pg.C_scaffold_4000603
Gene Details
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Functional Annotation
- Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.
Homologous
- Arabidopsis thaliana: AT1G06530
- Brassica napus: BnaC05G0282300ZS, BnaC08G0107100ZS, BnaA09G0392800ZS, BnaC05G0343300ZS, BnaA05G0091600ZS, BnaC04G0109800ZS, BnaC04G0540200ZS, BnaA04G0226200ZS
- Brassica oleracea: Bo5g048840, Bo5g089420, Bo8g030150, Bo4g038570, Bo4g183310
- Brassica rapa: Bra023252, Bra035511, Bra005336, Bra017317
Gene Resources
- Pfam: PF00644 PF12174
- UniProt: D7LCP9
- RefSeq: XP_002878921.1
- EMBL: GL348716
- AlphaFoldDB: D7LCP9
- InterPro: IPR012317
- PANTHER: PTHR37391 , PTHR37391:SF2
- SUPFAM: SSF56399
- PROSITE: PS51059
- Gene3D: 3.90.228.10
- HOGENOM: CLU_732262_0_0_1
Sequences
gDNA Sequence
- >fgenesh1_pg.C_scaffold_4000603
TGGGTGAGACGAAGCGAGAGACTGACAAGTCCGATGAGGAGAGGAAGGTTCTTGAAGCCATAGCTTTGAAAGCTTCGGAGTTAGAGACTAAAGTTGCACGGTTGCAGCATGAACTGATCAAGGCTACGACGGAGGCAAAGAAGCTCAATTCTGAGTTTTCACAGAAAGGTCATGGAATTGAGGAAGTGGAGAAAGAGGTCGCTGGTTTAAGGACTGTTAAGGAGGAGAATGAGAAGAGAATGAAGGAATTGGAGACAAAGCTTGGTGCTTTGGAGGTGAAGGAGTTAGAGGAGAAGAACGAAAGGTTCCAAGCAGAGGAAGTAGATGAGGAGAAAGAAAAGGAGGAGAAGAAAAGAAAGAAGATTAATGGTTTGGTTCCTGATAATGGTGTTGTTGTGAAACATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCCTGCTAATGACAATGGCGGAGTTTAGTGATCAGTTTTTTGGGCTCCAAGATGAGTTTTTCAACTATGGCTGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTAGGAATGGGAAACCTGGACTGTGGTTGAATTCGAATTCAAGGATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGATTTTGATAGAGAATGAAGAGAAGGGACAACAAGGTGAAGCCAATGGTGGAGCATTTATTAGAGAGTCCATCTATGGTGTTGGGATTTATTTAACTGTTGCAAACTGCTCTTACTTCAGTGCTAGATATTGTGATGTTGACAAAAACAGAGCACGTTACATAGATTGTGATGGTGACAAAAACGGAGTTCGTTACATGGTTTTATGTCATGTAATAATGGGGAATATGGAGCTTCTTCGTGGTGATAAAGCTCAATTCTTTTATGGTGGAGAAGAATATGACAATGGAGTAGTCGATGATATCGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATATGAACACTCATATATTCCCCGAATTTGTTTTTAGGTTCAAGCTGTCTAATCTCTCCAATACTGGAGGTAATTTGATTGCTAAGCGTGAAGTTGCTGCGTTGCTTAGAAACAATGATGGTGATAAGAAGATTTCAAGCTTAAGGGGGAGATTGTTGGTTTAAGCTTGAAAGAGGCTTAAACCGGAGGTTACTTAAACCGTAAGATGTCGGTTTATTGAAGAGATAAAGACTAATTCTTTAAGAGTTATCTAGAGAATATTATGTAATCCTAATTGAGTTATGATTAGGTTTAGAGGTTGTGGCTATATAAGCATATATCGAGTTGTGATATAGCTTAAGAGATTAAGAGAGTTTTATGCGGTTTTAGAGTTTGAGAAGTAATTGAGAGAGACTTAGGTTTTGAGAGATTTTCCTAAGTAATAAAAGAGAGTTATTCTTTTGTTGTTGTGTTCTTGATTACTTTTACAAACTAGATAATAATATATTAAATGTTCAAGACCTTTAATTTATTTACAAAAATACTGAACAAATTATCAAAATATTAAGACCTAATAATGAAATTACTTAAGTTTAGCTAAATACTAGTATATGTTAATGAATCATGGAAGAAAGTGTTGTAGCTGAATTATGATTAGACTTATATCATCCAAAGAGCCTCTCTTAAACGATAGCTCGGCTAGTTTCTTGCAGGCAGAAAGTGTCATTGGATTCTCTACGCCTACGCAGTACGGTCGAACCACATCGACCGCCTCTTGGTTCGTTACTTATAA
CDS Sequence
- >fgenesh1_pg.C_scaffold_4000603
ATGGGTGAGACGAAGCGAGAGACTGACAAGTCCGATGAGGAGAGGAAGGTTCTTGAAGCCATAGCTTTGAAAGCTTCGGAGTTAGAGACTAAAGTTGCACGGTTGCAGCATGAACTGATCAAGGCTACGACGGAGGCAAAGAAGCTCAATTCTGAGTTTTCACAGAAAGGTCATGGAATTGAGGAAGTGGAGAAAGAGGTCGCTGGTTTAAGGACTGTTAAGGAGGAGAATGAGAAGAGAATGAAGGAATTGGAGACAAAGCTTGGTGCTTTGGAGGTGAAGGAGTTAGAGGAGAAGAACGAAAGGTTCCAAGCAGAGGAAGTAGATGAGGAGAAAGAAAAGGAGGAGAAGAAAAGAAAGAAGATTAATGGTTTGGTTCCTGATAATGGTGTTGTTGTGAAACATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGGTGTTTTCCTGCTAATGACAATGGCGGAGTTTAGTGATCAGTTTTTTGGGCTCCAAGATGAGTTTTTCAACTATGGCTGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTGGCCTAGGAATGGGAAACCTGGACTGTGGTTGAATTCGAATTCAAGGATGGGAGCGATTTATAGTTTGATTGTGAGAGAAGAGGAGATTTTGATAGAGAATGAAGAGAAGGGACAACAAGGTGAAGCCAATGGTGGAGCATTTATTAGAGAGTCCATCTATGGTGTTGGGATTTATTTAACTGTTGCAAACTGCTCTTACTTCAGTGCTAGATATTGTGATGTTGACAAAAACAGAGCACGTTACATAGATTGTGATGGTGACAAAAACGGAGTTCGTTACATGGTTTTATGTCATGTAATAATGGGGAATATGGAGCTTCTTCGTGGTGATAAAGCTCAATTCTTTTATGGTGGAGAAGAATATGACAATGGAGTAGTCGATGATATCGAGAGTCCAAAGAATTACATTGTCTGGAACATCAATATGAACACTCATATATTCCCCGAATTTGTTTTTAGGTTCAAGCTGTCTAATCTCTCCAATACTGGAGGCAGAAAGTGTCATTGGATTCTCTACGCCTACGCAGTACGGTCGAACCACATCGACCGCCTCTTGGTTCGTTACTTATAA
Protein Sequence
- >fgenesh1_pg.C_scaffold_4000603
MGETKRETDKSDEERKVLEAIALKASELETKVARLQHELIKATTEAKKLNSEFSQKGHGIEEVEKEVAGLRTVKEENEKRMKELETKLGALEVKELEEKNERFQAEEVDEEKEKEEKKRKKINGLVPDNGVVVKHIKTGEEIVVSRRVVGVFLLMTMAEFSDQFFGLQDEFFNYGWRLEFRGNNVTALWPRNGKPGLWLNSNSRMGAIYSLIVREEEILIENEEKGQQGEANGGAFIRESIYGVGIYLTVANCSYFSARYCDVDKNRARYIDCDGDKNGVRYMVLCHVIMGNMELLRGDKAQFFYGGEEYDNGVVDDIESPKNYIVWNINMNTHIFPEFVFRFKLSNLSNTGGRKCHWILYAYAVRSNHIDRLLVRYL