Information report for fgenesh1_pg.C_scaffold_2002336
Gene Details
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Functional Annotation
- Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5’] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Homologous
- Brassica napus: BnaA10G0296300ZS, BnaC09G0616900ZS
- Brassica oleracea: Bo9g183540
- Brassica rapa: Bra009582
- Citrullus lanatus: Cla97C09G162100
- Cucumis melo: MELO3C024438
- Glycine max: Glyma.07G015500, Glyma.08G201000
- Gossypium hirsutum: Gohir.D09G081300, Gohir.A09G081200, Gohir.D03G057900
- Medicago truncatula: Medtr8g014460
- Nicotiana attenuata: A4A49_24873
- Prunus persica: PRUPE_1G178600
Gene Resources
- Pfam: PF03985
- UniProt: D7KXQ2
- RefSeq: XP_002887862.1
- EMBL: GL348714
- AlphaFoldDB: D7KXQ2
- InterPro: IPR007133
- PANTHER: PTHR23188 , PTHR23188:SF12
- eggNOG: KOG2478
- STRING: 81972.D7KXQ2
- HOGENOM: CLU_842930_0_0_1
Sequences
gDNA Sequence
- >fgenesh1_pg.C_scaffold_2002336
TGGTGGAGAAGAAGAGGAGAAGAAGAGAAGAAGAAGAAGAGGATAAGAAGAAACGTGAAAATTATGTGGAGAAGATATGGATTAGCAAAAGAAATGACAAGGGTACGTAATTTGTGTGTTAGATTAAGGGTTTTTGGACTTTGAACATATATTTTGATTTAAAAGAAAATGAGAAATAAAATTAAAATATAGGGGTGGCAAATACGATTAGTTTTATGGAGAAAGTGGCATTCTAGCCATTGTTTCGATAGATCAGTTGGAACAAAAGACGGACCACACGATTGGAATTTTTTATTTTCCAGATATGTCAATGAGATTTTCCTTATATTTCTCCCATCTTATTTTCGTCTTGTTTTTGTTGTTGTAGATGGTTTTTCTTATCCAAACGGAAAATTCCTTTGTTTGATTAGGATATAAATTGCGTATATATTTATCTTCTTCTTTTTCATTTTTCTAACAAAATAAATATTTATCTTTTTGGATAATAAAAAATTCACTAGTAGAATATACAAAAAATAAGATAGAAGCATCATTGTTTTCTCTCTTAAGTGATACAAGTTCGAATGGTAACAATGTATTTGGCTGTATAGAAAATGCGGGTTTTACAATAAAGTACGGTTCAACTATGGTATGTATTGGAGAAATGTATTTGCGAGATAAGTACGGTTTTTACAGAATAAACACTGCAAAAAAAGTTGATTGGTTAAAAAAGTTGATTGAATACATATATATAGGAGACTAACTTATATTTAATCTAAATAAATTAGAAAATAGTAAATATTTTAAATTTCTTAATTCTTATTCCAATAGGAATAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAGCCGACGCCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGCAAGCTCAAGTCAGTATTCTCACTTCTAGCAAACGACTAACTACATCGTGTTTACATATTAGACTGATAATCATCTTCTTGAAGGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATGACCATTAAGCGGGATAAAGATCAGTATGTTACTCTATTGCCAAAAAGATCTTCCAGTTTTATTTCTTGACTCCGTTTTACTTCTTAAATCTGATACAGCTATTTGATCCGACCACTAGATTTACAAAGTATACCATCACATCGCTGGAGAAATTATGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTATACAAGTATGATCTCTCAATAAAGTTTGACTGTCTTTAATGCGAGAGACCTCATCTACTCGGATACTTACTAATGTAGCTCTTTTCTTTCAGCCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGCTGCGTGATGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCCAACTGATAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGAATCGGCAAGACAGGTATCAATCTCACTTGTTGAAAGTTTCTTTTGTGATTTATAGCTTGTAAAAGCAGTTTCCAATCTTATATGTTCTCCATGTGTAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCTTGCACAATCTTAACAATAGGTGTGTTATTTCTCAAATTTGTGTATTTCTAAACAAAGTGAAAAAAGAAGGTCTAATGGTTTCTTTTTCTTTGGTCTCTAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAAGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGAAGTTTTACCACTGTTGCCATATTTTGATAGGTTGATTGCTCCTTATTTTCCCTTTGAGACAATCTTAAATCTTAAATCCCGAATCAGGCAATTTTTTCTCATAATAGCCCTGCATGTAGACACAACAATGAAGCCCTTGAAAGCTGACACTTTACGGTATTATCTGTATGTTGGCTTTCTGTGA
CDS Sequence
- >fgenesh1_pg.C_scaffold_2002336
ATGGTGGAGAAGAAGAGGAGAAGAAGAGAAGAAGAAGAAGAGGATAAGAAGAAACGTGAAAATTATGTGGAGAAGATATGGATTAGCAAAAGAAATGACAAGGAAAATGCGGGTTTTACAATAAAGTACGGTTCAACTATGGTATGTATTGGAGAAATGAATAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAGCCGACGCCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGCAAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATGACCATTAAGCGGGATAAAGATCAATTTACAAAGTATACCATCACATCGCTGGAGAAATTATGGAAACCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTATACAACCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGCTGCGTGATGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCCAACTGATAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGAATCGGCAAGACAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAACATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGAAGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGAAGTTTTACCACTGTTGCCATATTTTGATAGGTTGATTGCTCCTTATTTTCCCTTTGAGACAATCTTAAATCTTAAATCCCGAATCAGGCAATTTTTTCTCATAATAGCCCTGCATGTAGACACAACAATGAAGCCCTTGAAAGCTGACACTTTACGGTATTATCTGTATGTTGGCTTTCTGTGA
Protein Sequence
- >fgenesh1_pg.C_scaffold_2002336
MVEKKRRRREEEEEDKKKRENYVEKIWISKRNDKENAGFTIKYGSTMVCIGEMNNSHKSQMPKGHTEEKKPTPLLTTDRVENRLKKPTTFICKLKFRNELPDPSAQLKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPLDLLDLSVYNPPKFKAPLAPEDEELLRDDDAITPIKKDGIRRKERPTDKGVSWLVKTQYISSINNESARQSLTEKQAKELREMKGGINILHNLNNRERQIKDIEASFEACKSRPVHATNKSLQPVEVLPLLPYFDRLIAPYFPFETILNLKSRIRQFFLIIALHVDTTMKPLKADTLRYYLYVGFL