Information report for evm.TU.03.353
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Citrullus lanatus: Cla97C03G054490
- Cucumis melo: MELO3C002327P1, MELO3C002327
- Cucumis sativus: Cucsa.391680.1, CsGy1G009140
- Fragaria vesca: mrna09903.1-v1.0-hybrid
- Gossypium hirsutum: Gh_D07G0545, Gohir.D07G058400, Gh_D09G2376, Gohir.D09G245700
- Juglans regia: Jr02_01930, WALNUT_00020075-RA, Jr09_04290
- Malus domestica: MDP0000298212
- Prunus avium: Pav_sc0000522.1_g100.1.mk
- Prunus mume: XP_008239384.1
- Prunus persica: Prupe.5G159200.1.p, PRUPE_5G159200
- Pyrus bretschneideri: Pbr036965.1
- Rosa chinensis: RchiOBHm_Chr7g0191461
- Ziziphus jujuba: XP_015882347.1
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: A0A7J6E631
- EMBL: JAATIP010000288 , UZAU01000252
- OMA: MRFREPS
- InterPro: IPR003347 , IPR003349 , IPR013087 , IPR036236
- PANTHER: PTHR10694 , PTHR10694:SF38
- SUPFAM: SSF51197 , SSF57667
- PROSITE: PS00028 , PS50157 , PS51183 , PS51184
- Gene3D: 2.60.120.650 , 3.30.160.60
- OrthoDB: A0A7J6E631
Sequences
CDS Sequence
- >evm.TU.03.353
ATGGCAGCTTCGACTTTGGGGTCTGACCCAAGTCCAGAGGTGTTTTCATGGCTAAAAACCCTACCTTTAGCACCAGAGTACCATCCTACTTTGGCAGAGTTTCAAGATCCGATTTCATATATATTTAAGATCGAGAAAGAGGCTTCCAAGTATGGAATCTGCAAAATCATTCCTCCAGTGTCTCCATCGCCTAAGAAGACTGTAATTGCGAATCTAAACAAGTCGCTTGCTGCTCGTGCTGGGTATTCTGAAGGTTCGAATCCCAAAACACCTCCCACATTCACTACTCGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCCTCGTCCAGTTCAGAGGCCGGTTTGGCAGAGTGGTGAGCAGTACACGTTTCAGGAATTCGAGACTAAGGCGAAGGGTTTTGAGAAAGGGTTTTTAAAGAAATGTGGGAAGAAAGGAGGAGGGCTTTCGCCACTGGAAATCGAAACCCTTTACTGGAAAGCGACTGTGGATAAACCCTTTTCAGTCGAGTACGCGAACGACATGCCTGGCTCTGCTTTCGTTCCTGTTAATGCTAAGAAGAGTAGGGAAGCAGGGGAGAGTGTGACTCTTGGTGAGACTGCTTGGAACATGAGGGCGGTGTCTAGGTCAAAGGGGTCTTTGTTGCGGTTCATGAAGGAGGAGATTCCTGGGGTTACTTCCCCCATGGTGTATGTAGCTATGCTATTCAGTTGGTTTGCTTGGCATGTTGAGGACCATGACTTGCATAGTCTCAATTATTTGCACATGGGGGCTTCAAAGACGTGGTATGGCGTACCAAAGGAAGCTGCTGTTGCGTTTGAGGAGGTGATCAGAGTTCATGGCTATGGAGCAGAGATCAATCCCCTTGTCACCTTTTCCATTCTTGGTGAGAAGACCACAGTAATGTCACCTGAAGTATTCATTAAAGAAGGAGTTCCATGCTGCAGGCTAGTGCAAAATGCTGGTGAATTTGTTGTCACTTTTCCAAGGGCATATCATACTGGTTTCAGTCATGGATTTAATTGTGCAGAAGCAGCTAATATTGCGACACCTGAATGGTTAAGAGTTGCTAATGATGCTGCTATTCGACGAGCTTCAATTAACTATCCTCCAATGGTGTCTCACTTCCAGTTACTTTATGATCTTGCTCTTGCATTATGCTCAAGAATACCCTTGAGCATCGGCAGTGAACCACGAAGTTCTAGATTAAAAGACAAGAGAAAGGGTGAAGGAGAAACGGTTGTGAAAGAGCTATTTGTGCAGGATGTTTTAAAGAATAATGACTTACTTCATGTTCTTGGGAAAGGGTCTCCCATTGTACTTCTTCCTAGGACTTCTTCAGACATTCCACTATGTTCCAAATTGCGTGTTGGTTCTCATTTAAGGTCAAATACCAGTCTTTCTATAGAAGAAATGAAATCTTCAAGAAGTTTGATTTCTGATGATCTGATGGTAGACAGAAAGCAGGAGGTTGATCAGGTGAAAGAATTCTATCCAGTGAAAGGTAAGCTTGCCTCTTTGTGTGAGGGAAGCTGGGTTCCCTCTCGTGGAAATAAAAGAACATCTGGTTCAAATTTTAAGACTCCAATTAAGAGCGTCGAAGTGAAGAATAATGTTGACAGTGATAGATTATCAGAGCAGAGATTATTTTCTTGTGTTACTTGTGGAATCTTGAGCTTTGCTTGTGTTGCCATTGTTCAGCCAAAAGACCCAGCAGCCAGATATCTAATGGCAGCCGATTGTAGTTTTTTTAATGATTGGGTTGTTAATGCTGGAGTAGCTAGTAATGTGTTCCCCATTTCCAATGTGGATCAGACAGAATCTAAGCAGAATAACTACACAGCATGGGCAGACAATTGTGCTCCTGATTCATATGATGGTCCTGTTCCATCCATTTCTAACCAAGTTCAGATGGAAGACCAAAATAATGAGGTACTTTCAAACAGTGAAGCACATGAAGCTACTTCGGCACTTGGCTTATTAGCTTTACATTATGGAAACTCATCAGACTCTGAGGAAGATCAGGTTCGAGAAGATGATTCAATCTATGAAAATGAAACCAACATGGCAAATTGTTCACCAGAAAGCAAATATCGTTGTGAGAGTTCTGGTCTCTCTTTCCAAAACAGTCTGAGTGATGCAGCTGGCGATGATGGTCGCTCACCACAAGAACTTGATTTAGGGGAAGAACGTGCATCTCAAAATGCTGATTTTCATAAGGAAAATGGACACAACATAGATGATGTCAAATATAGCAATCGTCAAAATGTTGGTTGTTCTGTTGATGCATCTAATAATGTTGCTTCCACTGAAACAAATTGCTTGGTTGGTAAAATAAGAGATCCTATGATAGTTTCACAAACATGTTCCGCAGATACATATGATGCAGAAGCTACAAGGTTCTGCAAGGGTATTGTACCAATGAAGAATGAAGGCGTGCCATTGGCTCCGTTATCTGATGAAGACTCTTCTAGAATGCATGTGTTTTGTCTAGAGCATGCTGTAGAGGTAGAACAACAGCTTCGTCAAATAGGAGGTGTCCATATACTACTCCTTTGTCATCCAGATTATCCAAAGATAGAGACTGAAGCAAAGTCAATTGCAGAGGAACTGGGAATTAATTGTGCCTTGAATGATACTACATTCAGGGATGCCACCAAAGATGATCAGGAGAAGATCCAGTCAGCTCTGGATAGCGAGGATGCCATGCCTAAGAATGGGGACTGGGCTGTAAAACTTGGAATCAATCTCTTTTATAGTGCGAACCTCAGCCGCTCTCCACTTTATAGTAAGCAGATGCCTTATAATTCTGTTATATACAATGCATTTGGTCGCACTTCTCCAACAAGTTCGTCTGTGAGATCTGATGGATTTGGGAGGAGATCTGTCAAGAAAAAGGTTGTGGCGGGGAAATGGTGTGGTAAAGTCTGGATGTCAAACCAGGTACATCCCTTACTAGTAAAAAGAAATCCTGAGGACGAAGAAGAGAGAGGCATCCTTGCTTGGGCTACACCAGATGAGAATCTTGATAGAAATCATGACACTCCACACAGAAATAGTAACACCATGGTTGCTAAAAAGTATGTGAGGAAGAGGAAAATGAAAGTAGGAAATGAGTCAATCAAGAAAGCCAAATGCATTAAGGGAGAGGATATAGTTTCTGAAAATTCAATGGATGATGATTCTCATGAGCCCCATAGGAGGCCTTTTGGAAACAATCAAGCCACGCGGATTGGAGGTGGGTCAACGAAGAAAGGAAAACAACATATTCAGAGGGAAGATGCAGTTTCTGATGATTCAATGTATGTTTCTCTCAAGCAGTGTAAGAGGACTCTTAGAACCAAGGTAGCCACTTCTGTTGAGACAGATGACATAGTTTCAGATGATTCTTTAGGAGTTATTTCTAATTACCGGAACCGAAAGAACCCTAGAAGTGAGAAGGCCAAACATGTAAGAGATGCAGGAATACAAGATGTGGTTTCAGATGACTCACTTGATTTTGAGTCTAATCAGCGGGGTGGGAGGATTCCTAAAAGCAAGCAAGCTAAATTCATGGAGGAAGAAGATTCAGCTTCAGATGATCTTCCTAGTACTAATTTGTATAAGCAACAGACCAGAATTTATAAAAGCAAGTATGCTAAGTCCATTGAGAGAGAAGATGACGTTTCAGATGAGCCAGTGGAGGATTATGCTTGCGATGAAGACAAGAGAGTTCTTCGAAGCAAGCCAACAAAATCTCCTATGCAGCCGAAAATGAAACAAGGGACTGGGCGCAATGTGAGACAACCATCGTCTCAGCCTGTGAAACAAGGTACTCGCCAGATAATGAAAAAAGAAACTCAAAAAACAAAGCTACACACTCCACGGCTTCGAAATAGTCAGTGTGACCAGGACACTTCGCATATATGTGATGACGAAGAGGAAGAAGGTGGGCCTAGTACACGCCTTAGGAAAAGAACCCCTAAGCCACAAAAAACTACAGGAACCAAAAAGAAAGAGCAGCAGCAGCAACAAACAAGCAACAAAAAGGCAAAGAATGTTTCAGCTGGGAAAGCTCAGGCTGGACGCAGTGATACAAAATTAAAAGATGAAGAAGCAGAATACGTGTGTGATGTTGAGGGATGCACGATGAGTTTCGGGGTGAAGCACGAGCTTGTCCTTCATAAAAGAAACATTTGTCCGGTGAAGGGGTGTGGGAAAAAGTTCTTCTCTCATAAATATCTGGTGCAGCATCGTCGAGTTCATATGGATGATCGCCCTCTAAGGTGTCCCTGGAAGGGCTGCAAGATGACATTCAAGTGGGCATGGGCTCGCACTGAACACATAAGGGTTCACACAGGTGCTCGCCCTTATGTATGTGCAGAGCCAGGGTGCGGGCAGACATTTAGATTTGTGTCTGATTTTAGTCGCCACAAACGAAAGACCGGCCATTCAACAAAGAAAGGAAGATGA
Protein Sequence
- >evm.TU.03.353
MAASTLGSDPSPEVFSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKYGICKIIPPVSPSPKKTVIANLNKSLAARAGYSEGSNPKTPPTFTTRQQQIGFCPRKPRPVQRPVWQSGEQYTFQEFETKAKGFEKGFLKKCGKKGGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNAKKSREAGESVTLGETAWNMRAVSRSKGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPKEAAVAFEEVIRVHGYGAEINPLVTFSILGEKTTVMSPEVFIKEGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCAEAANIATPEWLRVANDAAIRRASINYPPMVSHFQLLYDLALALCSRIPLSIGSEPRSSRLKDKRKGEGETVVKELFVQDVLKNNDLLHVLGKGSPIVLLPRTSSDIPLCSKLRVGSHLRSNTSLSIEEMKSSRSLISDDLMVDRKQEVDQVKEFYPVKGKLASLCEGSWVPSRGNKRTSGSNFKTPIKSVEVKNNVDSDRLSEQRLFSCVTCGILSFACVAIVQPKDPAARYLMAADCSFFNDWVVNAGVASNVFPISNVDQTESKQNNYTAWADNCAPDSYDGPVPSISNQVQMEDQNNEVLSNSEAHEATSALGLLALHYGNSSDSEEDQVREDDSIYENETNMANCSPESKYRCESSGLSFQNSLSDAAGDDGRSPQELDLGEERASQNADFHKENGHNIDDVKYSNRQNVGCSVDASNNVASTETNCLVGKIRDPMIVSQTCSADTYDAEATRFCKGIVPMKNEGVPLAPLSDEDSSRMHVFCLEHAVEVEQQLRQIGGVHILLLCHPDYPKIETEAKSIAEELGINCALNDTTFRDATKDDQEKIQSALDSEDAMPKNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRTSPTSSSVRSDGFGRRSVKKKVVAGKWCGKVWMSNQVHPLLVKRNPEDEEERGILAWATPDENLDRNHDTPHRNSNTMVAKKYVRKRKMKVGNESIKKAKCIKGEDIVSENSMDDDSHEPHRRPFGNNQATRIGGGSTKKGKQHIQREDAVSDDSMYVSLKQCKRTLRTKVATSVETDDIVSDDSLGVISNYRNRKNPRSEKAKHVRDAGIQDVVSDDSLDFESNQRGGRIPKSKQAKFMEEEDSASDDLPSTNLYKQQTRIYKSKYAKSIEREDDVSDEPVEDYACDEDKRVLRSKPTKSPMQPKMKQGTGRNVRQPSSQPVKQGTRQIMKKETQKTKLHTPRLRNSQCDQDTSHICDDEEEEGGPSTRLRKRTPKPQKTTGTKKKEQQQQQTSNKKAKNVSAGKAQAGRSDTKLKDEEAEYVCDVEGCTMSFGVKHELVLHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGR