Information report for Eucgr.G02868
Gene Details
|
|
Functional Annotation
- Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis.
Homologous
- Actinidia chinensis: CEY00_Acc25410
- Citrullus lanatus: Cla97C08G150500
- Cucumis melo: MELO3C019826
- Cucumis sativus: CsGy6G020910
- Glycine max: Glyma.02G159100
- Gossypium hirsutum: Gohir.A05G293100, Gohir.D06G175700, Gohir.A06G168200
- Juglans regia: Jr07_34260, Jr07_34250, Jr07_34270, Jr07_34280, Jr12_21780
- Populus trichocarpa: POPTR_008G035200v3, POPTR_010G227200v3
- Prunus avium: Pav_sc0001183.1_g600.1.mk
- Prunus persica: PRUPE_2G208600
- Rosa chinensis: RchiOBHm_Chr1g0362561
Gene Resources
- Pfam: PF01593 PF04433
- UniProt: A0A059BH97
- RefSeq: XP_018715189.1
- EMBL: KK198759
- AlphaFoldDB: A0A059BH97
- OMA: IRNHLLC
- InterPro: IPR002937 , IPR007526 , IPR009057 , IPR036188 , IPR036388 , IPR050281
- PANTHER: PTHR10742 , PTHR10742:SF260
- SUPFAM: SSF46689 , SSF51905 , SSF54373
- PROSITE: PS50934
- Gene3D: 1.10.10.10 , 3.50.50.60 , 3.90.660.10
- eggNOG: KOG0029
- STRING: 71139.A0A059BH97
Sequences
CDS Sequence
- >Eucgr.G02868
ATGGAGCCTCCAGGCGACTCGCCCGACCCGTTCGCCGAATTCCCTCCGCTCGAGTTCTACCCCTTCGAGCCCCTCCCGAACCCCAGCCCCACCCCTCTCCCTCCCCCGCCGCCTCCCGGTCCCCCGTCCCCGCAAAACCCTAGCCCCGCCTCCGCCTCCGCGTACAATCCCCTCCTCTCCTTCACCGTCCCCAAGAAGCGCAGGCGCGGCCGGTCGCAGCGCAACGTCGCCTCCCTCCAGCTCCCCCCCTTGCCGTCCGGTACTCCCGGTTCCTCCGCGTCGGCTTCGGGTAAGCCTGCTCCTGGGAACCCTAGCTCCGCCCCCGATGCCTCTGACGAGATCATCGTGATCAATCGGGAGTCCACGGGGGAGGCCTTGATCGCGCTCACGGCTGGGTTCCCGGCCGACTCGCTCACTGATGAAGAGATCGATTTTGGCGTCGTGCCGATGGTCGGCGGGATCGAGCAGGTTAATTATATCTTGATTAGGAACCACATCATTGCGAAATGGCGTGAGAACGTGTCCAATTGGGTTACCAAGGAGATGTTCGCGGATGTTATTCCTAAACAGTGCGCTTCTCTACTGGACTCTGCTTATGATTACTTGGTTTCTCATGGGTATATTAATTTTGGGGTTGCGCCCGTAATCAAAGAGAAGATTCCAGCGGAGCCAAGCAGGCACAGCGTGATTATTGTCGGCGCCGGGCTTGCAGGATTGGCTGCAGCACGGCATTTGATGCGGGTAGGTTTTAAGGTGACAGTTTTGGAGGGTAGGAAGAGGGCAGGTGGGAGGGTTTATACAAAGAAGATGGAGGGTGGGAACAAGTTATCTGCTGCTGCCGATCTAGGGGGAAGTGTATTGACTGGGACATTGGGGAACCCCCTTGGGATTGTTGCTCGGCAGCTAGGGCATCCACTTCACAAGGTGAGGGACAAGTGCCCTCTTTACAGGGTGGATGGGAAGCCGGTTGACCCTGACATCGACATGAAGGTTGAGACTGCTTTTAATCGTCTCTTGGATAAGGCTAGTAGGCTTAGGCAGTCAATGGGAGAGGTGTCCATGGATGTTTCGCTTGGATCTGCCCTGGAAACATTTAGGCCGGTTTATGGGGATGCTGAAAATGCTGAGGAAATGAACTTGTTCAATTGGCATCTTGCCAATTTGGAATATGCTAATGCAGGTTTGCTCTCAAAGCTTTCCCTTGCATTTTGGGACCAGGATGATCCTTATGATATGGGAGGTGATCATTGTTTTCTGCATGGAGGGAATGGAAGACTGGTTCAGGCTTTGGCTGAGAATGTACCAATTTTGTACGAGAGAACTGTACATACTATCAGATATGGCAATGATGGTGTGCAAGTCATGGCAGGTAGCCAGGTTTTTGAGGGTGATATGGCTCTTTGTACTGTTCCTCTTGGTGTTCTGAAAAGTGGGTCTATCAAGTTTATTCCTGAGTTGCCTCAGAGAAAGCTTGATGGGATAAAGAGGCTGGGATTTGGCCTGCTAAATAAGGTTGCAATGCTTTTTCCTCATGTGTTTTGGGGCACAGATCTTGACACCTTTGGACACCTAAAAGATGATCCAAGCCGCCGCGGGGAGTTCTTTTTGTTTTATAGCTACGCAACAGTTGCTGGTGGTCCTCTCTTGATTGCATTAGTAGCTGGGGAAGCTGCACATAAGTTTGAGAGCATGTCTCCTACTGATGCGGTGACGCGGGTTCTTCAAATTCTCAAGGGTATCTATGAACCGCAGGGGATTAAGGTACCAGATCCTGTCCAAACTGTCTGCACCAGGTGGGGTGGTGATCCACTTAGCCTAGGTTCCTACTCTAATGTGGCGGTAGGGGCCTCTGGAGATGACTATGATATTTTAGCTGAAAGTGTGGGAGATGGAAGGCTCTTCTTTGCTGGGGAGGCAACTACCAGAAGGTATCCTGCAACTATGCACGGGGCCTTTCTGACTGGGCTGAGAGAAGCTGCTAATATGGTTCATCATGCTAATGCTCGTGCTTCAAAGAAAAAGATTGACCAGACTCCATCAAAGAATGCCCATTCCTGTGCTTCCATTCTAGCTGACTTATTCAGGGAACCTGATTTGGAATTTGGAAGCTTTGCTGTCATTTATGAGAAGAACTCTGATCCCAGCTCTGGTGCAATTTTGAGAGTGACTTTTAGTGAGCCTCGTAAAAAAGCTCATGATGGTCTGAAGTCAGACCAGCATTCCAATAAAGTACTATTTCAACAGCTTCAATCACATTTTAATCAGCAACAACAACTTCACATTTACACCATGTTGTCAAAGCAACAGGCTCTTGAGCTGAGAGAAGTGAGAGGAGGTGATGAGATGAGGTTTTATCATCTTTCTGAAAAGCTTGGGATAAAACTGGTAGGGAGGAAAGGTTTAGGACCTGCTGCTGATTCTGTGATCGCTTCCATTAAAGCTGAAAGGGGCAAGCGCAAACCTGCTTCAGTTTCTTTGGCTACTAAATCAGGTACATTGATGAATAAAAGAGGTGCTCCAAAGCAAAAAGTTATCAGAAAAGCTAAAATAGTGGGCAAAAGTGGAGGTCAGGGAGCTCTTCCTGGTTTAAATGCCGAAAGCAGTAAGGTGACACATGATATTGGGAGCACAAATCAAGCCGCTCCTCAAGCCACTCCTGGCCCATCTGAGACAGGGCAAGTTCATGACAACATAACGAAGCAATTAGAAGAAAGCGTACACCTCACAGATAGTTGA
Protein Sequence
- >Eucgr.G02868
MEPPGDSPDPFAEFPPLEFYPFEPLPNPSPTPLPPPPPPGPPSPQNPSPASASAYNPLLSFTVPKKRRRGRSQRNVASLQLPPLPSGTPGSSASASGKPAPGNPSSAPDASDEIIVINRESTGEALIALTAGFPADSLTDEEIDFGVVPMVGGIEQVNYILIRNHIIAKWRENVSNWVTKEMFADVIPKQCASLLDSAYDYLVSHGYINFGVAPVIKEKIPAEPSRHSVIIVGAGLAGLAAARHLMRVGFKVTVLEGRKRAGGRVYTKKMEGGNKLSAAADLGGSVLTGTLGNPLGIVARQLGHPLHKVRDKCPLYRVDGKPVDPDIDMKVETAFNRLLDKASRLRQSMGEVSMDVSLGSALETFRPVYGDAENAEEMNLFNWHLANLEYANAGLLSKLSLAFWDQDDPYDMGGDHCFLHGGNGRLVQALAENVPILYERTVHTIRYGNDGVQVMAGSQVFEGDMALCTVPLGVLKSGSIKFIPELPQRKLDGIKRLGFGLLNKVAMLFPHVFWGTDLDTFGHLKDDPSRRGEFFLFYSYATVAGGPLLIALVAGEAAHKFESMSPTDAVTRVLQILKGIYEPQGIKVPDPVQTVCTRWGGDPLSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFLTGLREAANMVHHANARASKKKIDQTPSKNAHSCASILADLFREPDLEFGSFAVIYEKNSDPSSGAILRVTFSEPRKKAHDGLKSDQHSNKVLFQQLQSHFNQQQQLHIYTMLSKQQALELREVRGGDEMRFYHLSEKLGIKLVGRKGLGPAADSVIASIKAERGKRKPASVSLATKSGTLMNKRGAPKQKVIRKAKIVGKSGGQGALPGLNAESSKVTHDIGSTNQAAPQATPGPSETGQVHDNITKQLEESVHLTDS*