Information report for EJB05_08208
Gene Details
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Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Oryza sativa: LOC_Os03g02970, OsDCL1a
- Setaria italica: SETIT_033853mg
- Setaria viridis: SEVIR_9G565900v2
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: A0A5J9WL21
- EMBL: RWGY01000004
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF37
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- OrthoDB: A0A5J9WL21
- CDD: cd00593 , cd02844 , cd18802 , cd19869
Sequences
CDS Sequence
- >EJB05_08208
ATGACAGCTTCCCCCGTTAACTTGAAGGGAGTCACTAGTCAAGAGGACTGTGCTATCAAGATACGGAATCTGGAGAGTAAACTGGATTCCGTAGTATGTACTATCAAAGATCGAAAAGAACTTGAGAAACATGTCCCCATGCCTTCGGAAGTAATTGTCCAATATGACAAAGCAGTCACTCTTTGGTCCATGCATGAACAAATCAAACAAATGGAGGTAGCAGTTGAAGAAGCTGCACTTTCTAGTTCTAAAAGATGGCAATTCATGGGGGCTAGGGATGCTGGGTCTAGGGATGAGCTGCGCCTTGTCTATGGTGTTTCTGAGCGTACAGAAAGTGATGGTGCAGCTAATTTGATCCAGAAATTGAGGGCTATAAATTATGCTTTAGGTGAACTAGGACAGTGGTGTGCGTACAAGGTTGCTCAATCCTTCTTGACAGCATTACAGAATGATGAAAGAGCTAACTACCAGGTTGATGTCAAGTTTCAAGAGTCACATTTGAAGAAGGTAGTTGATTTGTTGCACTGCCAGTTGACTGAAGGGGCTGCAATAAAAAGCGAGACTGTTTCTGTTGGTGAGCATGTAGATGAAGTCATTGGTGCTGCGGTGGCAGACGGGAAAGTAACTCCTAGGGTGCAGTCTTTGATCAAGATACTTCTCAAGCATCAGCATACTGACGATTTCCGGGCTATTATCTTTGTGGAGCGAGTGGTTACAGCATTAGTTCTTCCTAAGGTCTTTGCTGAGCTTCCATCATTAGGCTTTATCAGATGTGCAAGTTTGATAGGCCATAACAATAATCAAGAGATGCGGTCATGCCAAATGCAAGATACAATTGCAAAATTTCGTGATGGCCGGGTTACGCTGTTAGTTGCAACCAGTGTTGCAGAGGAAGGGCTTGATATTCGACAGTGCAATGTTGTCATTCGCTTTGACCTTGCAAAGACTGTCTTGGCTTACATACAGTCACGGGGTCGTGCTAGAAAGCCCGGATCTGACTACATACTGATGCTTGAAAGTGAGGAGACTCTGAGAAAAGAAGCTATTGAAAGGACGGACCTCAGTCATCTTGATGGTACTTCAGTGTTGAATCCTGTTGATACAGCATCTGATTCTATGTATCAGGTTGAATCAACAGGTGCAGTTGTCAGTTTGAACTCTGCAGTAGGACTCGTCCATTTTTACTGTTCACAGCTTCCAAGCGACAGGTACTCAATTCTTCGTCCAGAATTCATTATGCAAAAGCATGAAAAGCCAGGGGGGTCAACAGAATATTCTTGCAAGCTGCAGTTGCCGTGCAACGCTCCATTTGAAATCCTTGAAGGTCCCATATGCAGTTCGATACGTTTGGCACAACAAGCTGTTTGTTTAGCTGCTTGTAAGAAGCTACATGAGATGGGCGCCTTCACTGATATGCTTTTACCTGATAGAGGAAGTGGGGAAGGAGAAAAGACTGAACAAAATGATGAAGGCGATCCACTCCCTGGAACAGCACGTCATAGAGAGTTCTATCCTGAAGGTGTTGCTGAAATTCTGCGGGGAGAATGGATTTTATCTGGAAGAGATAGTTGCCAAAGCTCTCAATTTATTAAGTTATATATGTATTCTGTGAACTGTATAAACATTGGGAATTCAAAGGACCCTTTCGTTTCACAGATTTCAAATTTTGCCCTTATTTTGGGCAATGAGCTGGATGCAGAGGTTTTATCGATGAGGATGGATCTCTTTGTTGCTAGGACGATGATAACAAAGGCATCTCTCGTATTCCGTGGACCAATTGAAATTACAGAAAGTCAGCTGGTCCTACTGAAGAGCTTTCATGTTAGGCTCATGAGCATAGTACTTGATGTTGATGTTGATCCCTCTACTACACCTTGGGATCCGGCGAAGGCATACCTCTTTGTTCCTGTCGGGTCCGAGAAGTGTGTGGACGTTTTAAGAGAGATTGATTGGACTTTAGTTAATAGCATCGTGAACTCTGATGCCTGGAACAACCCCCTTCAGAGGGCACGTCCAGATGTGTATCTTGGCACCAATGAAAGGTCACTTGGTGGAGATAGGAGGGAATATGGGTTTGGGAAATTACGTCATGGAACTGCATTTGGGCAGAAGGCCCATCCAACTTATGGTATTAGAGGAGCCATTGCTGAATTTGATGTTGTAAAAGCATCTGGATTAGTTCCTGCCCGTGACAGAGGGAATATTAATGAATATCAATACCAAGGCAAGTTGTTCATGGCAGACTCAAGTTGGGATGCTAAAGATCTGGCTGGAATGGTCGTAACTGCTGTCCATTCTGGAAAGAGGTTCTATGTGGACAGTATTTGCTGTAACATGAATGAAGAAAATTCATTCCCCAGAAAGGAGGGTTACCTGGGTCCATTAGAGTACAGCTCGTATGCTGATTACTACAAGCAGAGGTATGGTGTGGAGTTAATTTATAAGAAACAACCTCTTATACGGGCACGTGGTGTTTCATATTGCAAAAACCTTCTCTCCCCTCGATTTGAGCATTCTGAAGCTAGAGACGGAGAGTTTTCAGAGAACCTGGACAAAACTTACTATGTATATTTACCTCCTGAACTGTGCCTTGTGCATCCCCTTCCTGGATCACTTGTTCGTGGAGCTCAGAGGTTACCCTCGATAATGAGAAGGGTAGAGAGCATGCTTCTTGCAATTCAATTGAAGGACATAATTGGTTATCCTGTACCCGAAACTAAGATATTAGAAGCGTTGACTGCTGCATCATGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTGCTGGGTGATGCATACCTGAAATGGGTTGTGAGTAGATTCCTGTTCCTAAAATATCCTCAAAAGCATGAGGGACAGCTTACAAGGATGCGGCAGCAGATGGTTAGCAACATGATTCTGTACCAGTATGCTCTGAATAAAAGCCTGCAATCTTATATCCAAGCGGATCGGTTTGCTCCATCCAGATGGGCTGCTCCAGGGGTGTTACCTGTATTTGATGAAGAAACCAGAGATTCTGAATCATCCATCTTTGAAGAAGAATCAACTCCTAGTAGTGCGTTACAAAAAGATTCTTTGGATGATGACATAGATAACATCCAAGAAGATGGGGAAATTGAGGGAGATTCTAGCTGCTATCGAGTTCTATCGAGCAAAACCTTGGCAGATGTTGTGGAGGCTCTTATTGGTGTCTACTATGTGGCAGGGGGGAAAATTGCTGCGAACCACCTGATGAAGTGGATTGGGATTCATGCAGAGTTGGATCCTCAAGAGATCCCTCCTTCAAAGCCATATAACATCCCTGATAGTATATTAAAAGGCATCAATTTTGAGACTTTAGAAGGTACATTGGGTATCAAATTTCAGACTAAAGGCTTACTTGTTGAGGCTATAACACATGCCTCCAGGCCATCATCTGGTGTTTCCTGTTACCAGCGTTTGGAGTTTGTTGGTGATGCCGTGTTGGATCATCTCATTACAAAGCACTTATTTTTTACATATACCGATCTACCACCTGGCCGCTTGACTGACTTGAGAGCTGCGGCTGTCAATAATGAGAACTTTGCAAGGGTTGCAGTAAAGCATAAACTGCATGTACATCTCCGCCATGGATCATCTGCATTGGAGACACAGATTCGGGAGTTCGTAAAGGATGTCCAGGAGGAGCTTTCCAAACCAGGATTTAATTCTTTCAGGCTTGGGGATTGCAAGGCTCCTAAGGTTCTAGGTGACATTGTTGAATCTATTGCTGGTGCGATATTTCTGGACAGTGGGTACGACACCTCCATAGTCTGGAAGGTCTTCCAGCCTCTTCTTGATCCCATGGTAACACCAGACACCCTTCCGATGCATCCTGTAAGAGAGCTCCAAGAGCGCTGCCAGCAGCAAGCTGAAGGCTTAGAATACAAAGCATCCCGGACTGGCAATATAGCTACTGTTGAAGTCTTTGTTGACGGCATTCAGATTGGTGTAGCTCAAAACCCACAGAAGAAGATGGCACAGAAAAATGCACTTGTTATCTTGAAGGAGAAGGAAACAGCAGCCAAGAAAGAGACCGAAAAGGATGGCGAGAAGAAAAACGGTTCTCAGATGTTCACTAGGCAAACCCTGAACGACATCTGCTTGAGGAGGCAGTGGCCAATGCCACAATACAGGTGCATAAACGAGGGTGGCCCTGCTCATGCCAAAAGATTTGTTTATGCGGTAAGGGTGAATACATCTGATCGTGGATGGACGGACGAGTGCATTGGAGAGCCGATGCCAAGTGTGAAGAAAGCTAAGGACTCAGCTGCCATTCTTCTCCTTGAGCTTTTGAATCGAAACTACCCTATCAAACCTGAGAGCAAATAG
Protein Sequence
- >EJB05_08208
MTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVIVQYDKAVTLWSMHEQIKQMEVAVEEAALSSSKRWQFMGARDAGSRDELRLVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAQSFLTALQNDERANYQVDVKFQESHLKKVVDLLHCQLTEGAAIKSETVSVGEHVDEVIGAAVADGKVTPRVQSLIKILLKHQHTDDFRAIIFVERVVTALVLPKVFAELPSLGFIRCASLIGHNNNQEMRSCQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMLESEETLRKEAIERTDLSHLDGTSVLNPVDTASDSMYQVESTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMQKHEKPGGSTEYSCKLQLPCNAPFEILEGPICSSIRLAQQAVCLAACKKLHEMGAFTDMLLPDRGSGEGEKTEQNDEGDPLPGTARHREFYPEGVAEILRGEWILSGRDSCQSSQFIKLYMYSVNCINIGNSKDPFVSQISNFALILGNELDAEVLSMRMDLFVARTMITKASLVFRGPIEITESQLVLLKSFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVGSEKCVDVLREIDWTLVNSIVNSDAWNNPLQRARPDVYLGTNERSLGGDRREYGFGKLRHGTAFGQKAHPTYGIRGAIAEFDVVKASGLVPARDRGNINEYQYQGKLFMADSSWDAKDLAGMVVTAVHSGKRFYVDSICCNMNEENSFPRKEGYLGPLEYSSYADYYKQRYGVELIYKKQPLIRARGVSYCKNLLSPRFEHSEARDGEFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKDIIGYPVPETKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALNKSLQSYIQADRFAPSRWAAPGVLPVFDEETRDSESSIFEEESTPSSALQKDSLDDDIDNIQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPQEIPPSKPYNIPDSILKGINFETLEGTLGIKFQTKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELSKPGFNSFRLGDCKAPKVLGDIVESIAGAIFLDSGYDTSIVWKVFQPLLDPMVTPDTLPMHPVRELQERCQQQAEGLEYKASRTGNIATVEVFVDGIQIGVAQNPQKKMAQKNALVILKEKETAAKKETEKDGEKKNGSQMFTRQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPSVKKAKDSAAILLLELLNRNYPIKPESK