Information report for Csa20g032260
Gene Details
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Functional Annotation
- Encodes an RNase III-like enzyme that catalyzes processing of trans-acting small interfering RNA precursors in a distinct small RNA biogenesis pathway. The protein is also involved in the production of 21-nt primary siRNAs from both inverted-repeat constructs and endogenous sequences, as well as the RDR6-dependent 21-nt secondary siRNAs involved in long-range cell-to-cell signaling. It binds DRB4, a ds-RNA binding protein.
Homologous
- Actinidia chinensis: CEY00_Acc14535
- Brassica napus: BnaC09G0461700ZS, BnaA10G0174400ZS
- Brassica oleracea: Bo9g151990
- Brassica rapa: Bra002293
- Glycine max: Glyma.13G156500, Glyma.17G104100
- Gossypium hirsutum: Gohir.A05G049800, Gohir.D05G051600
- Juglans regia: Jr06_20160, Jr06_20150
- Medicago truncatula: Medtr4g116860
- Populus trichocarpa: POPTR_006G188800v3
- Prunus persica: PRUPE_7G252800
- Rosa chinensis: RchiOBHm_Chr2g0086421
- Vitis vinifera: VIT_11s0149g00120
Sequences
CDS Sequence
- >Csa20g032260
ATGCGTGAACTTGTTGACTTGAGCTTGACGACCACTCCCTCGAAGCTTTTGGGGAAGCGAGACAGAGAGAAAAATAAGTTTTTAGAAAATAACAAAAACAAAAAAGCGAAAAAGCAGCGTGGAAATTGTAATTTCTTCGCTGAGGAGGCAAAGCCAAAACAGCAAATACACCCAATTCCTCCTCTCACCACCACTACTCCTCCTGCTGCTGTCACTCTTCATCCTTCTTCTTTGACCATGCCGTACGGTGAAATCGGCGACGATTTCACCTCACAGTCACTCGACTGTGACGCCGATGCTTCTTCCGACATTCACCTCTCTTCTTCTTCTTCTTCCTCTTTCTCTTCGTTTTCTTCTTCTTCTTCTTCTTCTTTGTTCTTGGCGTCTGGTGCTTGTACGGATGACCTCTCGGCGAAGATGGAGAAAGATCCTAGGAAAATCGCCAGGAGGTATCAGGTGGAGCTGTGTAAGAAAGCAATGGATGAGAACATTATTGTTTACTTGGGAACAGGTTGTGGGAAGACTCACATTGCGGTGATGCTTATATATGAGCTCGGTCACTTGGTTCTTCGTCCTAACAAAAGTGTTTGTATTTTTCTTGCTCCCACCGTGGCTTTGGTCGAACAGCAAGCCAAGGTCGTATCAGACTCTATCAACTTCAAAGTTGCAGTACATTGTGGAGGCAAGAGGTCTGTGAAGAGCCACTCTGAATGGGAGAAAGAGATTTCAGAGAATGAGGTTCTTGTTATGACTCCACAAATACTTCTGCATAACTTACAACACTGTTTCATCAGGATGGAGTCTATCTCCCTTCTAATATTTGATGAGTGTCACCATGCTCAACAACTAAGCAACCATCCTTATGCGGAAATCATGAAGGTTTTCTATAAATCAGAAAGTTTACAACAGCCTCGAATATTTGGAATGACTGCATCTCCAGTTGTTGGCAAAGGGTCTTTTCAATCTGAGAATTTATCGAAAAGCATAAATAGCCTTGAAAATTTACTCAATGCCAAGGTTTATTCAGTAGAAAGCAATGCCCAGCTGGATGGTTTTGTTTCATCTCCGTTAGTCAAAGTATATTATTATCGGTCAGCTATGACTGATGTATCTCAATCGACCATCAGATATGAAACCATGCTGGAGGACATCAAACAGCGGTGCTTGGCATCACTTAAGCTGCAGATTGATACCCATCAAACACAAAGCCTCCTAAATATGAAAAGGCTTCTCAAAAGAACTCATGATAATCTCATATATACTCTGGTGAATCTTGGCATCTGGGGAGCAATACAGGCTGCTAAAATACAATTGAATAGTGACCATGATGTACAAGAAGAGCCTGTGGGAGAGAATCATAAGTTAAAGATATGTGATACATATCTTTCTCTGGCTGCTGAGGTCCTCTCCTCTGGTGTTGCTAAAGATGAGAATGCATCTGAACTCCTCAGCTTAGCGGCGTTGAAGGAACCATTATTCTCTAGAAAGCTAGTTCAATTGATTGAAATCCTTTCGGTATTCAGGCTAGAGCCACACATGAAATGTATAATATTTGTCAATCGGATTGTAACTGCAAGAACGTTGTCATGCATACTAAATAACTTGGAACTGCTACGGTCTTGGAAGTCTGATTTCCTTGTTGGACTTAGTTCTGGACTAAAGAGCATGTCAAGGAGGAGTATGGAAACAATACTTCAACGATTCCAATCTAAAGAGCTCAATTTACTGGTTGCCACTAAAGTTGGTGAAGAAGGCCTGGATATTCAGACATGTTGTCTTGTGATCCGTTTCGATTTACCAGAGACTGTTACCAGCTTCATACAGTCCAGGGGCCGTGCTCGAATGCCTCAGTCCGAATATGCCTTTTTAGTGGACAGTTCGGTACAACCTTCAACTGAAGCTGCCAAAAAGGATGCTTGTCTAAAGGCTGTGTACGAGTTACACAACTTGGGTGTACTTAACGATTTTTTGTTGCCAGATTCAAAGGATGAAATTGAGGATGAATTGTCAGATGATGAATTTGATTTTGATAACGTCGAAGGTGAAGGCTGTTCACGAGGTGAACTGTATGAGATGTTTGTTCCTGACTTGTTTAAACAAAAGTGGGATCCTACAACAAGTTGTGTCAATCTACATTCTTACTACATAAGGTTTGTGCCTCATCCCGCGGATAGGCTCTACAGAAAGTTTGGTTTTTTCATGAAGTCACCTCTTCCCGTTGAGGCTGAGACTATGGATTTCAATCTTCACCTTGCTCATCAAAGATCTGTAAGTGTGAAGATTGTTCCATCAGGAGTCACCACATTCGACAACAATGAGATAAGGCTAGCAGAGCTTTTTCAGGAGGTTGCCCTGAAGGTTCTTTTTGAGCGGCAGGAGCTCATTCCGGAATTTGTTCCCTTAGAACTGCAATACTCTCCTAGAACAAGCAAATCTACCTTCTACCTTCTTCTTCCAATCAGTCTACATGATGCAGAAAGTGTTATATCTGTAGATTGGGTGACTATCAGAAGCTGCTTGGCATCACCAATCTTTAAGACTCCGTCTGTTTTAGTGGAAGATATAGTTCCTCCTACAGGGTCCCATCTAAAGCTCGCAAATGGCTGCTGGAATATTGATGATGTGAAGAACAGCTTGGTTTTTACTACCCACAATAAACAATTTTACTTTGTTGCTGATATCTGCCATGGAAGAAATGGTTTCAGTCCTATTAAGAAATCAAGCACCAAAAGCCATATGGAGAGCACATATGATTTGTATGGCGTGAAACTCAAGCATCCTGGACAGCCACTCTTGCAGGTGAAACCACTCTTTCATGTTCGGAACTTGCTTCACAACCGAATGCAGAAGAACTTGGAACCACAAGAACTTGCGGAATACTTCATAGAGATTCCTCCCGAGCTTTCTCAGTTAAAGATAAAAGGATTTTCTAAAGACATCGGAAGCTCGTTATCCTTGCTACCGTCAATCATGCATCGTATGGAGAATTTACTTGTGGCTATTGAACTGAAACATGTGCTGTCTGCTTCGATCCCTGAGATAGCTGAAGTTTCTGGTCACAGAGTACTCGAAGCTCTCACAACAGAGAAATGTCATGAGCACTTTTCTCTTGAAAGGCTTGAGGTGCTTGGTGATGCATTCCTCAAGTTTGCGGTTAGCCGACACCTTTTTCTACTCCATGATTGGCTTGATGAAGGAGAGTTGACTCGAAGACGCTCTAACGTTGTTAACAATTCCAATTTGTGTAGGCTTGCAATCAAGAGAAATTTGCAGGTCTACATCCGGGATCAAGCATTCGATCCTAATCAGTTCTTTGCATTTGGCCATCCATGCAGAGTAACCTGTGACGAAGGAATGATAAAAGAGGTTCATTCCTTGAATAGGGGTCCTGGGCTTTCGGATTCAGATACTGGTGAAATCAGATGTAGCAAAGGCCATCATTGGTTGTACAAGAAAACAATTGCTGATGTGGTTGAGGCTCTTGTGGGAGCTTTCTTAGTTGACAGTGGCTTCAAAGGTGCCGTGAAATTTCTTAGGTGGATTGGTGTAAATGTTGATTTTGAATCCGTGCAAGTACGAGATGCTTGTATTGCAAGCAGGCGCTACATGCCACTCACTACTCGCAATAATTTGGAGGCCCTTGAAAACCAGCTTGAATATACGTTCCTCCACAAAGGTCTACTTGTACAAGCCTTTATTCATCCATCTTACAACAGGCATGGAGGAGGCTGCTACCAGAGATTGGAGTTTCTTGGGGATGCTGTTCTGGACTACTTGATGACATCCTATTTTTTCACAGTCTTCCCGACACTGAAACCTGGTCAACTGACAGATCTAAGATCGCTCTCAGTAAATAATAAGGCGCTGGCAAATGTTGCTGTCAATTTTTCGCTAAAGAGATTTCTATTTTGCGAGTCCATTTATCTCCATGAAGCAATAGATGATTACACCAATTTCCTGGCAGCATCACCATTGGCAAGTGGACAATCTGAAGGTCCAAGATGCCCAAAGGTTCTTGGTGATTTGGTAGAATCCTGTTTGGGGGCTCTCTTCATTGATTGTGGGTTCAACTTGAATCATGTCTGGACTATGATGCTATCATGTCTAGATCCAGTCAAAAACTTGTCTAACCTGCAGATTAGTCCTGTAAAGGAACTGATTGAAATTTGCCAGTCTTACAAGTGGGATCGGGAAATATCAGCGACGAAGAAGGATGGTGCTTTTTCTGTTGAATTAAAAGTGACCAAGAAAGGTAGTTGCCTTACAGCTTCTGCAACTGGTCGGAACAAAAGAGAGAGCACAAAAAAGGCTGCACAGCTGATGATTACATATCTGAAGGCACGTGAGCACATAACAGCAGCCAATCCATTGGAAGATGTTGTGAAGAATAGCATCAGAAATGAAGCTAAATTAATTGGCTACAATGAAGAGCCTATAGATGTTGTGGATCTTGATGGGCTGGACGTTGAAAACCTTAATCTCCAAGAAAATTTTGGCGAGAACAGTAAAATAAGCAGCTCATACCTCATCAGGCGAGGTCTCCCCCAGGCACCATCTAAAACAGAAGACAGGCTTCCTCAAAAGACCATCAAGGAAGCAGGTGGATCAAGCAGCAGAACCGCAAAATCCCTCTTGCATGAAACATGTGTTGCTAACTGTTGGAGGCCACCAAACTTTGAATGTTGTGAGCAGGAAGGACCAGGCCACCTGAAATCATTCACATATAAGGTAATCGTGGAAGTTGAAGATGCCCCAAATATGACATTGGAGTGTTATGGTGATGCTAGACCAACAAAGAAAGGTGCTGCAGAGCACGCTGCCCAAGCTGCTATGTGGTGCCTCAAGCATTCTGGATTCCTTAGCTGA
Protein Sequence
- >Csa20g032260
MRELVDLSLTTTPSKLLGKRDREKNKFLENNKNKKAKKQRGNCNFFAEEAKPKQQIHPIPPLTTTTPPAAVTLHPSSLTMPYGEIGDDFTSQSLDCDADASSDIHLSSSSSSSFSSFSSSSSSSLFLASGACTDDLSAKMEKDPRKIARRYQVELCKKAMDENIIVYLGTGCGKTHIAVMLIYELGHLVLRPNKSVCIFLAPTVALVEQQAKVVSDSINFKVAVHCGGKRSVKSHSEWEKEISENEVLVMTPQILLHNLQHCFIRMESISLLIFDECHHAQQLSNHPYAEIMKVFYKSESLQQPRIFGMTASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNAQLDGFVSSPLVKVYYYRSAMTDVSQSTIRYETMLEDIKQRCLASLKLQIDTHQTQSLLNMKRLLKRTHDNLIYTLVNLGIWGAIQAAKIQLNSDHDVQEEPVGENHKLKICDTYLSLAAEVLSSGVAKDENASELLSLAALKEPLFSRKLVQLIEILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILQRFQSKELNLLVATKVGEEGLDIQTCCLVIRFDLPETVTSFIQSRGRARMPQSEYAFLVDSSVQPSTEAAKKDACLKAVYELHNLGVLNDFLLPDSKDEIEDELSDDEFDFDNVEGEGCSRGELYEMFVPDLFKQKWDPTTSCVNLHSYYIRFVPHPADRLYRKFGFFMKSPLPVEAETMDFNLHLAHQRSVSVKIVPSGVTTFDNNEIRLAELFQEVALKVLFERQELIPEFVPLELQYSPRTSKSTFYLLLPISLHDAESVISVDWVTIRSCLASPIFKTPSVLVEDIVPPTGSHLKLANGCWNIDDVKNSLVFTTHNKQFYFVADICHGRNGFSPIKKSSTKSHMESTYDLYGVKLKHPGQPLLQVKPLFHVRNLLHNRMQKNLEPQELAEYFIEIPPELSQLKIKGFSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTTEKCHEHFSLERLEVLGDAFLKFAVSRHLFLLHDWLDEGELTRRRSNVVNNSNLCRLAIKRNLQVYIRDQAFDPNQFFAFGHPCRVTCDEGMIKEVHSLNRGPGLSDSDTGEIRCSKGHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLRWIGVNVDFESVQVRDACIASRRYMPLTTRNNLEALENQLEYTFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPTLKPGQLTDLRSLSVNNKALANVAVNFSLKRFLFCESIYLHEAIDDYTNFLAASPLASGQSEGPRCPKVLGDLVESCLGALFIDCGFNLNHVWTMMLSCLDPVKNLSNLQISPVKELIEICQSYKWDREISATKKDGAFSVELKVTKKGSCLTASATGRNKRESTKKAAQLMITYLKAREHITAANPLEDVVKNSIRNEAKLIGYNEEPIDVVDLDGLDVENLNLQENFGENSKISSSYLIRRGLPQAPSKTEDRLPQKTIKEAGGSSSRTAKSLLHETCVANCWRPPNFECCEQEGPGHLKSFTYKVIVEVEDAPNMTLECYGDARPTKKGAAEHAAQAAMWCLKHSGFLS