Information report for Csa16g023440
Gene Details
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Functional Annotation
- Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein.
Homologous
- Brassica napus: BnaA07G0279500ZS, BnaC06G0319800ZS, BnaA09G0592000ZS, BnaC08G0443700ZS
- Brassica oleracea: Bo6g098830, Bo8g101050
- Brassica rapa: Bra004082, Bra038515
- Gossypium hirsutum: Gohir.A12G268100, Gohir.D12G268500, Gohir.D11G003600, Gohir.A11G004100
- Manihot esculenta: MANES_14G168600
- Prunus persica: PRUPE_5G140900
Sequences
CDS Sequence
- >Csa16g023440
CTCCACTTTTCAACTTCCCCCAAATATTTTCGAAACCCGCCTCTCTCTCTTCCTCCTCTCTCCTTTTATAATTTCCCCCAAATCTCTCATCTCTCTCTCACAAATCTCGATAAAACCAAAATCTCTCTCTCTCTCTCTCTCACACTCGATTCAACAATGGCGATTGAGATTCAGGTTCCCTGCGACGGAGACGGTGTGTGTATGCGGTGCAAGGCCACCCCACCAGCGGAAGAATCGCTCACGTGCAGCACGTGCGTCACACCATGGCACGTGGCGTGTCTCCTCCCGGAATCACTCGTTTCTTCGACCGGAGGAGAGTGGCAGTGTCCCGATTGCTCCGGCGATGTTGTCGAATCCGCCGTTCCGGTTTCCGGAACCGCCGGCGGTTCGGATCTTGTAGCAGCGGTACGTGCGATTGAGGCTGATGTGACACTGACTGAAGCTCAGAAAGCCAAAAAAAGGCAAAAACTCATGAGTGGTGGTGGTGCTGCTGGTGGTGACGATGAAGAAGAAGACGAGAAGAAGAAGAAGAAGAGCGATGATGATGAAGATATATGTTGCTGTATTTGCATTAAATTGCCAGAAAGACCTGTCACGACACCGTGTGGTCACAACTTCGGTTTGAAATGTTTTGAGAAATGGGTAGCTAAAGGGAATCTAACTTGTATGACATGCCGAGGCAAGATTCCGAAGCACGTGGCGCATAATCCACGCATCAACTTAACTCTAGTCTCTGCTATTCGTTTAGCAAAGGCTTCAAACAGTGATGTTGAGGTAACTGCAGCCAAGGTTCAGCATTTCATCCGGAACCAGGACAGGCCTGATAAGGCGTTTACTACCTCGCGGGCCAAAAAGACTGGGAAAGCTAATGCTTGTAGTGGTAAGATTTATGTCACGATTCCAGGTGATTATTTTGGTCCGATAACAGCAGATAATGATCCCACTAGAAAGAAAGGTGTCTTGGTTGGTGAGTCTTGGGATGACAGGCAAGATTGTAGGCAGTGGGGGGCGCATTTCCCTCATGTTGCTGGAATCGCTGGGCAATCGGGTTTTGGAGCTCAGTCAGTTGCTCTCTCTGGAGGGTATGATGATGATGAGGACCACGGTGAGTGGTTCATCTACACTGGAAGTGGTGGAAGGGATCTCACTGGAAACAAAAGAACTAGCAAGATACAATCTTTCGACCAGACGTTTACGAAAATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTCACAAGGAGAAGCGTTCTGCATATGCCCCTGAAGAAGGAGTGAGATATGATGGTGTTTACAGGATTGAGAAATGCTGGCGAAAAGTTGGAATCCAGGGTTCTTTTAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGGCAGCTCCATGGGCCAGTGATGACCTTGGTGATCGTCCAAGACCATTGCCAGTTATTCCTGAGCTCAAGAAAGCTACTGACCTGTTTGTGAGAAAGGAGAAGCCATCATGGGATTTCGATGAAGCTGATGGTCGTTGGAAATGGATGAAGTCTCCACCTGCTAGTAGAAAGTGTATCGCTGCTCTGGATCCTGAGTATAGGAAGATCGTTAGGAAAAGAGGAAAGAATTCTATGATGGACAAACTTCGCAAAGAATTTAGCTGCCAAATCTGTCAGAAAGTGATGAGTCTTCCAGTGACAACGCCTTGTGCTCACAACTTCTGCAAGGGATGCTTAGAAGCTAAATTTGCTGGGATCTCTCAAGTGCGGGAGAGAAGCAGAGGCGGGCGCACACTACGTGCAAAGAAGAACGTCATGACCTGTCCTTGTTGCACTACTGACCTCTCTGAGTTTCTCCAGAACCCACAGGTGAACAGAGAACTGATGGAGGTGATTGAGAATCTGAAGAAGAAAGAGGAAGAGTCTCAAGCCGTTGATGAATCAAGCAATGACGCAGCAGAGTCCGAAGGAGGAGAAGAGGAAGAAGAGGAAGAAGCTGAACCACCGAGTAAGAAGATCAAACTGGACAGCGACTGTGTTGAACCTGTTGGTGCTGGAAACTAA
Protein Sequence
- >Csa16g023440
LHFSTSPKYFRNPPLSLPPLSFYNFPQISHLSLTNLDKTKISLSLSLTLDSTMAIEIQVPCDGDGVCMRCKATPPAEESLTCSTCVTPWHVACLLPESLVSSTGGEWQCPDCSGDVVESAVPVSGTAGGSDLVAAVRAIEADVTLTEAQKAKKRQKLMSGGGAAGGDDEEEDEKKKKKSDDDEDICCCICIKLPERPVTTPCGHNFGLKCFEKWVAKGNLTCMTCRGKIPKHVAHNPRINLTLVSAIRLAKASNSDVEVTAAKVQHFIRNQDRPDKAFTTSRAKKTGKANACSGKIYVTIPGDYFGPITADNDPTRKKGVLVGESWDDRQDCRQWGAHFPHVAGIAGQSGFGAQSVALSGGYDDDEDHGEWFIYTGSGGRDLTGNKRTSKIQSFDQTFTKMNEALRLSCKMGYPVRVVRSHKEKRSAYAPEEGVRYDGVYRIEKCWRKVGIQGSFKVCRYLFVRCDNEAAPWASDDLGDRPRPLPVIPELKKATDLFVRKEKPSWDFDEADGRWKWMKSPPASRKCIAALDPEYRKIVRKRGKNSMMDKLRKEFSCQICQKVMSLPVTTPCAHNFCKGCLEAKFAGISQVRERSRGGRTLRAKKNVMTCPCCTTDLSEFLQNPQVNRELMEVIENLKKKEEESQAVDESSNDAAESEGGEEEEEEEAEPPSKKIKLDSDCVEPVGAGN