Information report for CICLE_v10018473mg
Gene Details
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Functional Annotation
- Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.
Homologous
- Citrus sinensis: orange1.1g001000m, orange1.1g001904m
- Gossypium arboreum: Cotton_A_09671_BGI-A2_v1.0
- Gossypium hirsutum: Gohir.A09G244800, Gh_D09G2376, Gh_A09G2168, Gohir.D09G245700
- Manihot esculenta: Manes.06G114100.1.p, MANES_06G114100, Manes.14G055900.1.p, MANES_14G055900
- Populus trichocarpa: Potri.015G089000.1, POPTR_015G089000v3, Potri.012G092400.1, POPTR_012G092400v3
Gene Resources
- Pfam: PF02373 PF02375
- UniProt: V4TIR4
- RefSeq: XP_006440007.1
- EMBL: KI536661
- KEGG: cic:CICLE_v10018473mg
- OMA: MRFREPS
- InterPro: IPR003347 , IPR003349 , IPR013087 , IPR036236
- PANTHER: PTHR10694 , PTHR10694:SF38
- SUPFAM: SSF51197 , SSF57667
- PROSITE: PS00028 , PS50157 , PS51183 , PS51184
- Gene3D: 2.60.120.650 , 3.30.160.60
- SMR: V4TIR4
- eggNOG: KOG1246 , KOG1721
- STRING: 85681.V4TIR4
Sequences
CDS Sequence
- >CICLE_v10018473mg
ATGGCGGAGCCAGTACAGCAACAAGATATATTGCCATGGCTGAAAACCCTACCTGTGGCTCCAGAATTTCACCCGACTTTGGCCGAGTTTCAAGATCCAATTGCTTACATTTTCAAGATCGAAAAGGAAGCCTCTCAGTACGGCATCTGCAAAATCGTTCCCCCGGTCCCACCGCCTCCCAAAAAAACCGCCATCACGTTCCTCAATCGCTCCCTAGCTCAGCGCGCGGCAGCAACTGGCGGTGCTACTTCCAGCTCTGGTCCTACATTTACCACTCGGCAGCAGCAGATCGGCTTCTGTCCTCGAAAACCGCGTCCGGTTCAGAAACCGGTCTGGCAGAGTGGCGAGTACTACACTTTCCAGGAATTTGAAACCAAAGCCAAGAATTTCGAGAAGAGTTATTTGAAGAAATGCGGCAACAAGAAGGCTGCTCTTTCTGCTTTGGAAATCGAGAGCTTGTACTGGAAGGCCAGCGTGGACAAACCGTTTTCTGTTGAATATGCTAACGACATGCCGGGCTCGGCGTTTGTGCCTGTGCGGAAAATCAGGGAGGCGGTTGGGGAAGGGGTGACGGTGGGCGAGACGCCCTGGAATATGAGGGGAGTGTCGAGGGCTAAAGGGTCACTGTTGAGGTTTATGAAGGAGGAGATTCCGGGTGTGACTTCGCCCATGGTTTATATAGCCATGCTGTTTAGCTGGTTTGCTTGGCATGCCGAGGATCATGACTTGCATAGCTTGAATTACCTGCATATGGGGGCTAGTAAGACGTGGTATGGGGTGCCCATGGAAGCGGCCAATGCTTTTGAGGAGGTGGTTAGAGTTCACGGTTATGGAGAAGAGATTAATCCTTTGGTTACATTTGCTACACTTGGTGAGAAAACAACAATGATATCACCTGAAGTGTTTGTTGGTGCGGGGGTTCCATGCTGCAGGTTGGTGCAAAATGCTGGAGAGTTCGTTGTGACTTTCCCAAGAGCCTATCATATGGGATTCAGTCACGGATTTAATTGTGGGGAGGCAGCCAATATTGCAACCCCTGAATGGTTAAACATTGCTAAAGATGCTGCTATTCGAAGAGCTTCAATCAATTATCCACCTATGGTTTCTCATTTCCAGTTACTCTATGATCTTGCAATAGCAATGCATTCAAGTCTTCCTGTGGCTGTCAGTGCTAAACCACGGAGTTCTCGACTAAAGGATAAGAATAAAGACGAGGGAGAAACTTTGGTTAAAGAATTATTTGTGCAGGATGTAGCACAGAATAATGAATTGCTTCACGTTCTTGGACAAGGATCTCCAATAGTACTTCTTCCTCAAAGTTCTTCGGGGGCTTTAGGAGCAAACCCCTGGATCCCCCTTGGTCTATGCAGTTACAGAGAAGCAATAAAATCCTCGGGTGGTTTGGTTTCTAACGATATCATGGTTGGCAAGAATAATGGAATCAATCCTGTGAAGGGTTACTGTTCTGTGAAAGGAAAATTTGCTTCTTTATATGCAAGAAATTCCTCATTGAGTGAAACTGATAACATAAGAAATTGGAATTCTCAGATACTATCCACAGATACTGAAAGACAGAATACTGTTCAAGGTGATCGGTCGTCCGATCAGAGGTTGTTTTCTTGTGTCACATGTGGGATCCTGAGCTTTGCTTGTGTAGCTGTCATTCAACCTAGAGAACCAACTGCTAGATACCTCATGTCGGCTGATTGTAGCTTCTTCAATGATTGGATTGTTGGTTCTGGAGTCAGTGGTGCATTTCGTGCTGCTGGAGAGGATGTAATAGCTTCAGAGCACAATTCTCGTTCAAGATGGATCGGAAAGAGTGGTCGGAATAGTTTATATGATGTCCCTGTTCAATCAGCTAACCAAATTCAAGCAGTGGATGAAAGTAATGAAACAATTTCAGATAGAGAAACAAAAGGAGATACCTCTGCTCTTAACTTACTAGCTATAACTTATGGCAATTCATCTGACTCTGAGGAAGAACAGGTTGAACCAAATGTTCCCATGTGTGATGATAAAGAAACTAAATTGACGGAGTGTTTGTTAGAAAGAAAATATCAGCAAAACTTTCATGCTGCTGCTGCTGCTGCAGGGAGTCAAGATCTCTCCTTCATAAGCCTTGATTGCGAGGATGAAGCTTCGCTTCAGATCAGTAATGTGCAACCTGAATTTAGAAGAGATTACTTGAATGATAAAAATCCTCAAATGTCTGAATGCTCTGTACAGTTTGAAACTGATAAACACGATTGCTCTAAACCTAATGGTTTTGATGGTTGTTTTGGAGATCCAATAGCAGCATCTTATGCTTCAAAATGCGCTCCAGTCATCCATGGTGGTGAAAATGTGGAGTTTAGCAAGGCCATTGTACCAGTAATGAATGCTGAAATGTCCTTTGCTCCAAGATCTGATGAAGATTCTTCTCGAATGCATGTCTTCTGTCTTGAACATGCTGTGGAAGTAGAGCAACAACTTCGTCCTATTGGAGGGGTGGATATATTTCTTCTTTGTCATCCAGATTATCCCAAGATGGTGGCTGAAGCGAAGTTAGTGGCTGAAGAATTGGGAATTGATTCTCTCTGTGATGAAATCTCATTCAGGGTTGCTACCAAAGAAGACGAGAAGAGAATCCACTTGTCTCTGGATAGTGAAGATGCAATACCTGGTAATGGGGACTGGGCTGTGAAGTTAGGAATCAATCTTTTCTACAGTGCCAACCTCAGCCGCTCTCCTCTTTACAGTAAGCAGATGCCATACAATTCTATAATATACAATGCTTTTGGCCGTAGTTCTCCTGCTAGCTCGCCCAACAAATATGATAATGGGAGACGTCCTGCCAGACAGAGAAAAGTAGTAGCAGGGAAATGGTGTGGGAGAGTTTGGATGTCAAATCAGGTTCATCCTTTTCTAGTGCAAAAGGATCCTGAGGAACAAGAGCTAGAAAGGAGCTTTCATGCTTGGACAACACCAGATGAAAATTTTGAAAGAAAACCAGAAAGTATTTGCCAAACTACCTCGACCTTGGTGACTAGAAAGTACAGTAGGAAGAGGAAAATGGTAGCAGAGAGTGTGTCAACCAAGAAAGCCAAATGTATCGATACAGAAGATGCAGGCTCAAAATATTCACTGGAGGGTGATACTCGTATCCAGCAAAGGAGGATTCTTAGAAACAAGCCAGCCAAATTAATGGAAAAAAAAGATGTGGACTTGCCCGATTCATCAGAAGTTAGTTCTTATCAACAGAAGAGGAGTGTTTCTAGAAGAAAACAAGCCAAATGTATTCAGAGGGAAGTTGGAGATTCAAATGATGCACTGCCAGGCAATTCACTTATACAGTATAGGAGGATTCCTAAGAGGAAGCATGCCAAATGTATTGGTAGGGAAGATGCAGTTTTGGATGATTTAACTGATGATAGCTCCCTTAAGCAGTACAGGAGGATTCCTAGGAGCAAGCTAGCCAAACATGTTGCGAGAGAGGATGAAGTTTCAGATAATTCGCTGCGAGGTACTTCTGATAGGCAGCATACAAGCATTCCAAAAGGCAAGGAATTCACATGCATTGATAGAGATGATGCAATTTCAGATGATTCACTGCAGGATAATTCTCGTCAGTTGCAGTTTAACAGGGTTCCAAAAAGCAAGCAAGCTGAATGGATTGAGAGAGAAGATGCAGCTTCTGATGATTCACTGGAGGATTATCCTCATCGCTTGCAGCATAAAAAAATTCCAAATATCAAGCAACCCAAATGTATTGAGAGTGAAGATCCGGTTTTAGATAATTTGCTGGAGAAAAATACTCATCGGTTGCATCATCAGAGGATTCTAAAAAGCAAGCGAGCGAAGTGTGTTGAGAGAGAAGATGCAGTTTCAGATGATTTACTGGAAGATAGTTCTCATATGTTGCCTAGGAGATCTCAAAAAAGCAAGCAAGCCAAATGGATGAGAGAAGATGCTGTTTCAGATGATTCACTGGAGGATAATTGTCATCAGCAACATAAGAGGATTCCTAGGGACAAGCAATCTAAATGCACTGAGATGGAAGATACTGTTTTCTATGATTCTGCTGAGGATAAGATTCGGCAGTTTAGGAGAATTGCTAGAAAGAGGGCCAATTTTACTGAAAGGGAAGATGCAGTCTTGTATGATTTATTAGATAATAAATCTCATAGAAGACATTGTAGGACTCTCAGGAGCAAACAACTGAGAACCGAAACACTTCGGAAAATGAAACAGGAAACCCCTTCACATATGAAGCCCGGGAAAAGTAGATTAACAAAACAAGAGACCTCTCGGCTAGTGAAACAAGTGACTTCTCGGCAGCATAGTGTTAAAAGTGATCAGAATGCCAAACTGTTTGATTCAGTTGTTGAACAGGAGCTAGAAGGCGGACCTAGCACTCGACTTAGGAAAAGAATCCCAAAGCCTCAGAAAGAGTTTGAAACCAAACCAAAGGAGAAAAACCAAGCTGCCAAAAAGAAGGTAAAAAATGCTTCAGTGGTGAAGGCTCCTGCTGGTTTGAATAATGCAAAAATTAAGGATGAGGAAGCAGGATACCATTGTGACATGGAGGGTTGCACGATGAGTTTCGGCACAAAACAAGAGTTGGTGCTGCACAAGAAAAACATCTGTCCAGTCAAGGGATGTGGGAAGAAGTTTTTCTCACACAAATACCTAGTGCAGCACCGTCGTGTTCATTTGGATGATCGTCCCCTTAAATGCCCCTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCGCGTACTGAGCACATAAGGGTTCACACAGGTGCTCGACCTTATGTGTGTGCTGAGCCAGGCTGTGGCCAGACATTCCGGTTTGTATCAGATTTCAGTCGTCACAAGCGGAAGACCGGACATTCTGCAAAGAAGAGCAGAGGGTAG
Protein Sequence
- >CICLE_v10018473mg
MAEPVQQQDILPWLKTLPVAPEFHPTLAEFQDPIAYIFKIEKEASQYGICKIVPPVPPPPKKTAITFLNRSLAQRAAATGGATSSSGPTFTTRQQQIGFCPRKPRPVQKPVWQSGEYYTFQEFETKAKNFEKSYLKKCGNKKAALSALEIESLYWKASVDKPFSVEYANDMPGSAFVPVRKIREAVGEGVTVGETPWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYIAMLFSWFAWHAEDHDLHSLNYLHMGASKTWYGVPMEAANAFEEVVRVHGYGEEINPLVTFATLGEKTTMISPEVFVGAGVPCCRLVQNAGEFVVTFPRAYHMGFSHGFNCGEAANIATPEWLNIAKDAAIRRASINYPPMVSHFQLLYDLAIAMHSSLPVAVSAKPRSSRLKDKNKDEGETLVKELFVQDVAQNNELLHVLGQGSPIVLLPQSSSGALGANPWIPLGLCSYREAIKSSGGLVSNDIMVGKNNGINPVKGYCSVKGKFASLYARNSSLSETDNIRNWNSQILSTDTERQNTVQGDRSSDQRLFSCVTCGILSFACVAVIQPREPTARYLMSADCSFFNDWIVGSGVSGAFRAAGEDVIASEHNSRSRWIGKSGRNSLYDVPVQSANQIQAVDESNETISDRETKGDTSALNLLAITYGNSSDSEEEQVEPNVPMCDDKETKLTECLLERKYQQNFHAAAAAAGSQDLSFISLDCEDEASLQISNVQPEFRRDYLNDKNPQMSECSVQFETDKHDCSKPNGFDGCFGDPIAASYASKCAPVIHGGENVEFSKAIVPVMNAEMSFAPRSDEDSSRMHVFCLEHAVEVEQQLRPIGGVDIFLLCHPDYPKMVAEAKLVAEELGIDSLCDEISFRVATKEDEKRIHLSLDSEDAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSIIYNAFGRSSPASSPNKYDNGRRPARQRKVVAGKWCGRVWMSNQVHPFLVQKDPEEQELERSFHAWTTPDENFERKPESICQTTSTLVTRKYSRKRKMVAESVSTKKAKCIDTEDAGSKYSLEGDTRIQQRRILRNKPAKLMEKKDVDLPDSSEVSSYQQKRSVSRRKQAKCIQREVGDSNDALPGNSLIQYRRIPKRKHAKCIGREDAVLDDLTDDSSLKQYRRIPRSKLAKHVAREDEVSDNSLRGTSDRQHTSIPKGKEFTCIDRDDAISDDSLQDNSRQLQFNRVPKSKQAEWIEREDAASDDSLEDYPHRLQHKKIPNIKQPKCIESEDPVLDNLLEKNTHRLHHQRILKSKRAKCVEREDAVSDDLLEDSSHMLPRRSQKSKQAKWMREDAVSDDSLEDNCHQQHKRIPRDKQSKCTEMEDTVFYDSAEDKIRQFRRIARKRANFTEREDAVLYDLLDNKSHRRHCRTLRSKQLRTETLRKMKQETPSHMKPGKSRLTKQETSRLVKQVTSRQHSVKSDQNAKLFDSVVEQELEGGPSTRLRKRIPKPQKEFETKPKEKNQAAKKKVKNASVVKAPAGLNNAKIKDEEAGYHCDMEGCTMSFGTKQELVLHKKNICPVKGCGKKFFSHKYLVQHRRVHLDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSRG