Information report for CICLE_v10000405mg
Gene Details
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Functional Annotation
- a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).
Homologous
- Actinidia chinensis: CEY00_Acc24101
- Citrullus lanatus: Cla97C11G221920
- Cucumis sativus: CsGy4G016800
- Glycine max: Glyma.04G247200
- Gossypium hirsutum: Gohir.D05G271100, Gohir.A05G269200, Gohir.D02G079200, Gohir.A02G071900
- Juglans regia: Jr06_03670
- Manihot esculenta: MANES_02G166500
- Medicago truncatula: Medtr3g088480
- Populus trichocarpa: POPTR_005G180800v3, POPTR_002G080600v3
- Prunus avium: Pav_sc0000195.1_g340.1.mk
- Prunus persica: PRUPE_1G492600
- Rosa chinensis: RchiOBHm_Chr6g0296331
Gene Resources
- Pfam: PF00249 PF04433 PF16495
- UniProt: V4T7N5
- RefSeq: XP_006434250.1
- EMBL: KI536799
- AlphaFoldDB: V4T7N5
- OMA: DCFHHGR
- InterPro: IPR000433 , IPR001005 , IPR007526 , IPR009057 , IPR017884 , IPR032451 , IPR036388
- PANTHER: PTHR12802 , PTHR12802:SF61
- SUPFAM: SSF46689 , SSF57850
- PROSITE: PS50090 , PS50135 , PS50934 , PS51293
- Gene3D: 1.10.10.10 , 1.10.10.60
- OrthoDB: V4T7N5
- CDD: cd00167
- eggNOG: KOG1279
- STRING: 85681.V4T7N5
Sequences
CDS Sequence
- >CICLE_v10000405mg
ATGCCAGCCTCCCCTTCCTTCCATTCAGATACTCGAAAATGGAAGAGGCGGAAGCGGGAGCCACGAAAGCAACTCAACAAGCTCGACGAAGACGACGTCGTAGAGGACGAAGACGAGGAACAAGACAACAACGAAACGGATAACCACAATAACAATTCTAACGCGGACCACCGCGACAACGGAGACGATTTCCAGCACGCAACGGCTCCGGATCCGGCCTCAAACGAGACCGAGGTCTTGATCGACGGTGGGACCCGCATATGCGAGTTTCCTACCGCGGTTCAGCGCGTGGTGAACCGGCCGCACGTCTCGGTGATGGATATTGTGGCCATTGAGGCGGCATATTTGGCCGGGGACGCCAGTGGGAGGAGTTCGGCGGTGGCGTTGGAGAATATTTCGTATGGGCAGCTGCAGGCGTTGTCCGCTGTGCCGGCCGATAGTGCGGTGTTGGATCCTGAGAGGAGCGATACATCGTGTGTGATTACTCCGCCACAAATTATGGAAGGAAAAGGTGTTGTTAAGCGGTTTGGAAGTAGAGTTCATGTACTTCCTATGCATTCAGATTGGTTTTCCCCAGACACAGTGCATCGACTTGAAAGACAAGTGGTACCACATTTCTTCTCTGGGAAATCTCCAGATCATACACCAGAGAAGTACATGGAATGTAGAAACCATATTGTGGCCAAATATATGGATAATCCAGAGAAAAGGCTTATCGTTTCTGATTGTCAGGGTTTGGTGGATGGTGTTAGCCCTGAAGATCTAACTCGAATTTTTCGATTCCTGAACCACTGGGGGATTATCAATTATTGTGCTGCTGTACAAAGTCCTGAGCCTTGGAATCGTGGGTCCTACTTGAGAGAGGATTCAAATGGTGAGGTTAGTGTTCCATCGGATGCCTTAAAGTCCATTGACAGTTTGATTAAATTTGACAAGCCTAAATGTAGCCTCAAGGTGGCTGATGTGTATTCATCATCTTGTGGTGGTGCTGATTTCTTTGACTTGGACAACACCATCCGAGAGCGTTTATCTGAAAACCATTGCAATTATTGTTCTCAGCCGATTCCTGCTGTGTACTATCAGTCACAAAAGGAGGTTGATGTACTTCTATGTCCTGAATGCTTCCATGAAGGAAGATTTGTTACTGGTCATTCAAGCCTAGATTATATTAGGGTTGATCCAGCAAGAGAATATGGTGATATTGATGGAGAGACTTGGAGTGATCAAGAAACATTTTTGCTGCTTGAGGGTATAGAAATGTATAATGATAATTGGAATGAAATTGCAGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATCCTCCATTTCGTCCGTCTACCCATGGAGGATGGCATACTGGAAAATGTCGAAGTTCCCAACACTTCCAGGACATCTAATTCATCAAGTAGAGATGATCGTGGAGGATTGCATTCAACTGTAAATGGCGATCTGCCAGGAGCAGGCCTTCAAGAAGCTGATATGGAAAACCGCCTCCCATTTTCAAATTCTGGGAATCCAGTTATGGCCTTGGTTGCCTTTTTAGCTTCTGCTGTCGGACCAAGAGTCGCTGCAGCTTGTGCCCATGCATCCTTGGCAGCATTGTCTAAACAAATGGAAGGTGCTGGACATGGTAATAGGATGAACTCAGAGAATGTACATAATAGAGAAGAAGAGAACTCCGGAGTTCATGGTCCTTGGGGTCAAAATGGAGCTGAGGCTGCTCTATTATCTGCCGAAAAAGTTAAAGCTGCTGCTAAAGCTGGTCTTGCTGCTGCAGCAACAAAAGCAAAACTGTTTGCTGATCATGAAGAACGAGAAATTCAGAGGCTATCTGCTAATATCATAAATCATCAGTTGAAAAGATTGGAGCTGAAGCTGAAGCAGTTTGCAGAAGTGGAAACCTTGCTAATGAGAGAATGTGAACAAGTAGAGAAGGCAAGGCAGAGGTTTGCCACCGAGCGGACCCGCATAGTATCAACTCGGTTGGGACCTGGTGGAGTCCCTTCACAAATGAATCTACCTGTTGTTGCGCCTTCCATGGTTAACAATAACATTGGCAACAATCGGCCACAAGTGATGTCAGCCTCATCTTCGCAACCAAGCATTCCAGGTACAGCGCCAACCAACCAGCCCATCCCCACATGCAGTTTAGGCCCCAACAGATGTTTCCGTTGGGGCAGAGGATGCCTCTAA
Protein Sequence
- >CICLE_v10000405mg
MPASPSFHSDTRKWKRRKREPRKQLNKLDEDDVVEDEDEEQDNNETDNHNNNSNADHRDNGDDFQHATAPDPASNETEVLIDGGTRICEFPTAVQRVVNRPHVSVMDIVAIEAAYLAGDASGRSSAVALENISYGQLQALSAVPADSAVLDPERSDTSCVITPPQIMEGKGVVKRFGSRVHVLPMHSDWFSPDTVHRLERQVVPHFFSGKSPDHTPEKYMECRNHIVAKYMDNPEKRLIVSDCQGLVDGVSPEDLTRIFRFLNHWGIINYCAAVQSPEPWNRGSYLREDSNGEVSVPSDALKSIDSLIKFDKPKCSLKVADVYSSSCGGADFFDLDNTIRERLSENHCNYCSQPIPAVYYQSQKEVDVLLCPECFHEGRFVTGHSSLDYIRVDPAREYGDIDGETWSDQETFLLLEGIEMYNDNWNEIAEHVGTKSKAQCILHFVRLPMEDGILENVEVPNTSRTSNSSSRDDRGGLHSTVNGDLPGAGLQEADMENRLPFSNSGNPVMALVAFLASAVGPRVAAACAHASLAALSKQMEGAGHGNRMNSENVHNREEENSGVHGPWGQNGAEAALLSAEKVKAAAKAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMRECEQVEKARQRFATERTRIVSTRLGPGGVPSQMNLPVVAPSMVNNNIGNNRPQVMSASSSQPSIPGTAPTNQPIPTCSLGPNRCFRWGRGCL