Information report for CEY00_Acc30531
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Citrullus lanatus: Cla97C05G095010
- Cucumis melo: MELO3C014878
- Cucumis sativus: CsGy3G024010
- Glycine max: Glyma.05G077800, Glyma.19G071500
- Gossypium hirsutum: Gohir.A10G159100
- Juglans regia: Jr01_06520, Jr10_04600
- Manihot esculenta: MANES_15G141800
- Populus trichocarpa: POPTR_001G331400v3
- Prunus avium: Pav_sc0001080.1_g1100.1.mk
- Prunus persica: PRUPE_3G305400
- Sesamum indicum: SIN_1004180
- Vitis vinifera: VIT_14s0068g02140
Gene Resources
- Pfam: PF02201
- UniProt: A0A2R6P8Z5
- EMBL: NKQK01000027
- AlphaFoldDB: A0A2R6P8Z5
- OMA: LRCSITI
- InterPro: IPR003121 , IPR019835 , IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47592
- PROSITE: PS51925
- Gene3D: 1.10.245.10
- OrthoDB: A0A2R6P8Z5
- CDD: cd10568
- STRING: 1590841.A0A2R6P8Z5
Sequences
gDNA Sequence
- >CEY00_Acc30531
AAGCAGAATCAAATTTATTACGGATAGATTCGATATTGCGCAAAGAAAAACTATTAGACCTTGTTCGTTCAAATTAGCATAATCACAGTACTGTGAGCCAGAGTAACAGCAAAGAAAGTCTCCTTTCCATCTAACAGTGAAAAGGTCAAACATATATCCAAAGCCCTCCAAGAAAAGATTTCAAAACCATTCGTACATTTAAGCTTGGAAGGAGTAACTATCAGCAGTTCCATGATCCCTATTCATGTGCTTCCAGGACAGTTTGTAACTGGCTTGCGATTCAGATAACGAATAACAGCGTCTTCAACCCTATTTAATCCAGTAAGCATAATTAATACCGAAATCGAAAAAGTACCAACAAAAAATATTCCAGATATTACGCTCGCCCAGGCTGACACATGCAGTCGTGTAATACTTTAATAGCCAAAAATCAACTTCGAAGATTGATTTCATGACAGAATGACCTTGGACAGTAAGCTAACATGAAGCAGATAAACTATCATGTGACAAACCTTGTGCAGTGGCAGCTGCTTAATATTGTTTGTTTCTCAAAATGAAAGTGAGAGTAATTGCATCCATCCCAAAAATCAATTTTATTTAGTCAAGTCAGCATAGGCATCAAGAAAAGAATATAAATATATAGATATTTAGTATTTTTTTTGAAGCTATATATATTTAGTATTTGTATGCATACCTTCTAGTATTTGTAGATATCTAAATGTTTCCTACCACCAAATCAATCACAAACTTCAAATACTATTCGGGCACAGGCACATTTTAACAATGGTGGTCACTTTTTTCCTCCAATTTTTCTTTATGAGAACGTGATAGAAAATTTTATTAGGAGCAAGTAGTCGATAAGCTTACCAGGCTTGATTGAAGAATTCTGACCGATGCTCTTTTTCAGCACTACGACTTGCTTCACCTGCTACAAGCTTCAGATCTCTGCCTTGAGATTCAATTAAAGCATTAATAAATTCCACCGGCGATTGGCTGAAGCCAAGAAAGAAGGCTCGTCTCTTACGGTGCTCTTGGATCTTCCTTATAGCAGCACAAATTGCTTCGTCGCAGGCATCAATCTCTTTGGTTTTCTCTGTGTTGGCCAATAACGCATTCAATTCCTTCTGGATTGGAAAGGGGACATCCACCAACACATCATAGCATGCATTTCCAGTTGGGTTATTCCCTGAAAGCTTGATCTTGTGCTCCAAATGTATAGGCTGCGGAGGAGTTAAATGATGCGATATCTTCTGTGAAACAGTAGTAAACTTCAATTTTTCTTCCCCAAATACTTTCTGGAGTGGTGGGTCACAATGAAAAAAAGAAGGGTCATTTGGGTTCTGCAACTTCCTAGCCTTTACATAATGCCAGATAGCTGCTATGATTCTAGGGCGGGTATCAACCTCAATACCAAGAACTTCCATCAATGCTGGAGAAAGCTTATATTTCTCGGGCGCATAATTCATTTCTAACCTTATATTTGCTGTAAACTCTTTATCCCCTGTCCTCTTGACTTCAAAACCCTCTTGAGGTGTGGGTGATCGAGCACTATCCCACATAATGATATGGTTCTCCGGATATAGTCTCTGGTCCAAGGAAATGGTGACTCTTTTGAAGAAAGATGAGAACTTTGGGTACAAGGAACTCGATCTCTGCATCATCCCAGCTTGATCAGGATCTATTCCCTCTTCCAAGATCCTTCCAATTATCTTGAGGGTCCAAGTAGGGGGGTCAGCATTTGGCTTCTTAGGAATCGTGCGAATCTGATTAGCGAAAGTATTGAATACATAGATCCGAAGCGTTTTCTGAATGGAGGGTGGGTTTTTAATGGCCTCCTGGATATCAATTTTCTTTCTCGTCACAGCAGCATCTACACACGATTCGAACTCAAGTAACTGAGTGTAAAGTGCAGATTCGGGCAAAATTGCAGCCACTCTCTCCTGAAACTGCTTCTCGGGAAGTTTCTGCTTCTTCTTACGGGCAGCAGTTGCAAGCTCCATATTTCTCAGGGGCAAGACCATGTTGTTCGCTGAGAAGCCACTAGGTGGCCGAACCGGCGGCTTCTGAGGTGGACGCTTCGCACTTGCATTGCCCGGCGTGTTAACCATTGGGGAAGAGGAACCCGCGTTACCAACCCCCGAAGTGTGGGGCTGATTAATAGCAAGCCCTTGGGCTTGTAACTGAGCCTGGAATTGGGCGTGTGCCGCTTGCGCTTGGGCTTGGGCGTGAGCCTGAGCCTTTAAATGTGATTGGGCAAGCGCATGGGCTTGAGCATATGCCTGGGCGTTAGCTGCCGATAGTTGAGACATATGATATTGACCAGGGAAGCCAGACCCAATTTGCTGTTGGGCTTGGGACTGTGATTGGGGATGTGCATTAGGATTTGCAGGCATATTTAAAGAACCTATCCCAACACTTCCAAACGGAGATGAAGCCCCAATATTTTTCGGTAGGTTATTGTTACTCGCAGACATCCTTGTCTCGACTCTCAATCTAAACAAGTACCCAACAAAATCTTCAAAAGAGGCCAACCCAAAAAACCCAAATTACCATAGCCTACCAAAAGCTGTGCTTAATTCTCCAAATGCACTGCCTCCAAGAACTGTCACTATACCGAAAACCAGCAAAACCCTAAATTTTACGGGAACACAAAAGGCCAATTCACCATAATTCTCAAAATAATGTTACAGTCAAACATCAAATTTCTTTGTCAAAATCACTATCTTGGATATTTATTTCAGAAGAAAACACATGCGGATATTTCAAGAACTCATTAGCCCTTGATTTCGACGAAAGGGCATAACAAAACAAGATGTAAAATTAATGCAATGAAACATGAAAGACAATCGTATCGATGTTAAAGCAGATCAAATATATGGTCGGGTCAATCGGAACGAAACACACAAGTGCACTAATTGAGACTTGAGAGAATCGATGGAGAGAGTGAGTGACGAGTGGGTTTTCCTTACTGAGAGATGGGTCAGCCTCAATTCGGAGTTCTTCACTCTTCGCAGTTCGCTTCCCTCCGTATGAGAGTGGCGAGT
CDS Sequence
- >CEY00_Acc30531
ATGTCTGCGAGTAACAATAACCTACCGAAAAATATTGGGGCTTCATCTCCGTTTGGAAGTGTTGGGATAGGTTCTTTAAATATGCCTGCAAATCCTAATGCACATCCCCAATCACAGTCCCAAGCCCAACAGCAAATTGGGTCTGGCTTCCCTGGTCAATATCATATGTCTCAACTATCGGCAGCTAACGCCCAGGCATATGCTCAAGCCCATGCGCTTGCCCAATCACATTTAAAGGCTCAGGCTCACGCCCAAGCCCAAGCGCAAGCGGCACACGCCCAATTCCAGGCTCAGTTACAAGCCCAAGGGCTTGCTATTAATCAGCCCCACACTTCGGGGGTTGGTAACGCGGGTTCCTCTTCCCCAATGGTTAACACGCCGGGCAATGCAAGTGCGAAGCGTCCACCTCAGAAGCCGCCGGTTCGGCCACCTAGTGGCTTCTCAGCGAACAACATGGTCTTGCCCCTGAGAAATATGGAGCTTGCAACTGCTGCCCGTAAGAAGAAGCAGAAACTTCCCGAGAAGCAGTTTCAGGAGAGAGTGGCTGCAATTTTGCCCGAATCTGCACTTTACACTCAGTTACTTGAGTTCGAATCGTGTGTAGATGCTGCTGTGACGAGAAAGAAAATTGATATCCAGGAGGCCATTAAAAACCCACCCTCCATTCAGAAAACGCTTCGGATCTATGTATTCAATACTTTCGCTAATCAGATTCGCACGATTCCTAAGAAGCCAAATGCTGACCCCCCTACTTGGACCCTCAAGATAATTGGAAGGATCTTGGAAGAGGGAATAGATCCTGATCAAGCTGGGATGATGCAGAGATCGAGTTCCTTGTACCCAAAGTTCTCATCTTTCTTCAAAAGAGTCACCATTTCCTTGGACCAGAGACTATATCCGGAGAACCATATCATTATGTGGGATAGTGCTCGATCACCCACACCTCAAGAGGGTTTTGAAGTCAAGAGGACAGGGGATAAAGAGTTTACAGCAAATATAAGGTTAGAAATGAATTATGCGCCCGAGAAATATAAGCTTTCTCCAGCATTGATGGAAGTTCTTGGTATTGAGGTTGATACCCGCCCTAGAATCATAGCAGCTATCTGGCATTATGTAAAGGCTAGGAAGTTGCAGAACCCAAATGACCCTTCTTTTTTTCATTGTGACCCACCACTCCAGAAAGTATTTGGGGAAGAAAAATTGAAGTTTACTACTGTTTCACAGAAGATATCGCATCATTTAACTCCTCCGCAGCCTATACATTTGGAGCACAAGATCAAGCTTTCAGGGAATAACCCAACTGGAAATGCATGCTATGATGTGTTGGTGGATGTCCCCTTTCCAATCCAGAAGGAATTGAATGCGTTATTGGCCAACACAGAGAAAACCAAAGAGATTGATGCCTGCGACGAAGCAATTTGTGCTGCTATAAGGAAGATCCAAGAGCACCGTAAGAGACGAGCCTTCTTTCTTGGCTTCAGCCAATCGCCGGTGGAATTTATTAATGCTTTAATTGAATCTCAAGGCAGAGATCTGAAGCTTGTAGCAGGTGAAGCAAGTCGTAGTGCTGAAAAAGAGCATCGGTCAGAATTCTTCAATCAAGCCTGGGTTGAAGACGCTGTTATTCGTTATCTGAATCGCAAGCCAGTTACAAACTGTCCTGGAAGCACATGA
Protein Sequence
- >CEY00_Acc30531
MSASNNNLPKNIGASSPFGSVGIGSLNMPANPNAHPQSQSQAQQQIGSGFPGQYHMSQLSAANAQAYAQAHALAQSHLKAQAHAQAQAQAAHAQFQAQLQAQGLAINQPHTSGVGNAGSSSPMVNTPGNASAKRPPQKPPVRPPSGFSANNMVLPLRNMELATAARKKKQKLPEKQFQERVAAILPESALYTQLLEFESCVDAAVTRKKIDIQEAIKNPPSIQKTLRIYVFNTFANQIRTIPKKPNADPPTWTLKIIGRILEEGIDPDQAGMMQRSSSLYPKFSSFFKRVTISLDQRLYPENHIIMWDSARSPTPQEGFEVKRTGDKEFTANIRLEMNYAPEKYKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGEEKLKFTTVSQKISHHLTPPQPIHLEHKIKLSGNNPTGNACYDVLVDVPFPIQKELNALLANTEKTKEIDACDEAICAAIRKIQEHRKRRAFFLGFSQSPVEFINALIESQGRDLKLVAGEASRSAEKEHRSEFFNQAWVEDAVIRYLNRKPVTNCPGST