Information report for Ccrd_023684
Gene Details
|
|
Functional Annotation
- RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Homologous
- Actinidia chinensis: CEY00_Acc17948
- Gossypium hirsutum: Gohir.D12G197100, Gohir.A12G194700
- Juglans regia: Jr09_00040, Jr02_00090
- Lactuca sativa: gene-LSAT_1X29960, gene-LSAT_4X85420
- Musa acuminata: Ma06_g09860, Ma10_g12510
- Nicotiana attenuata: A4A49_00147
- Populus trichocarpa: POPTR_015G109300v3
- Prunus avium: Pav_sc0001740.1_g280.1.mk
- Vitis vinifera: VIT_14s0068g00720, VIT_00s0283g00020
Gene Resources
- Pfam: PF00565 PF00567
- UniProt: A0A103XWC0
- EMBL: LEKV01003810
- AlphaFoldDB: A0A103XWC0
- OMA: QSPKDKF
- InterPro: IPR002999 , IPR016071 , IPR016685 , IPR035437 , IPR047395
- PANTHER: PTHR12302 , PTHR12302:SF2
- SUPFAM: SSF50199 , SSF63748
- PROSITE: PS50304 , PS50830
- Gene3D: 2.30.30.140 , 2.40.50.90
- CDD: cd20443
- STRING: 59895.A0A103XWC0
Sequences
CDS Sequence
- >Ccrd_023684
ATGGCACAAGCAGCAGCAAGTTCGGGATGGTTGAGAGGAAGAGTGAAAGCTGCTCCATCTGGTGATACCTTGGTGATTATGGGATTTACCAAAGCTGAAATACCCCCAGAGAAGACTATCGTTTTGGCTCATCTTTCATCCCCAAGATTGGCCCGTAGAGGAGGCAATGATGACCCGTTTGCATGGGAAAGCAGAGAATTCTTACGAAAGTTGTGTATAGGAAAGGCTAAAATGGTTACAAATGAAAGAAAGGGAGAAGAAATACAATCCACAGAAGGATCCCAGGGAAGTAATTCCCTCCTCACAGCCAAGAGCTATGATCCTAACAAAAAGGATGTTGTTTTCAAAACGGAATACACAATCCCAAATTTCTCCCGAGAATTTTGCAGTCTTTTCGTTGGTACTACAAATATTGCGAAGGAGGTTGTTACTCATGGCTGGGCGAAGGTTAAAGAGGCTAAAGGAGAGGTGACTCCTGAGCATGCTGAATTGCTACGCCTTGAAGAACAAGCCAGGCAACAGGGAATAGGTCTATGGAACAGGGCTCCCGGTGCTTCTGCAGCAGCCATCAGGAATCTTCCACCCTCATCTGTTGGTGACCCAAGCAATTTAGATGCAATGGGGCTCTTAGCTGCAAACAAAGGCAGACCCATGGAAGCAATTGTAGAGCAAGTTCGTGATGGGAGCTCGCTTCGTGTTTATCTGCTTCCAGAGTTTCAGTTTGTCCAAGTGTTTGTTGCTGGAATCCAGGCACCTTCAATGGGAAGAAGGACAATGGCTGAACCTACTGCAACAACTGAGGTACCCTCTGATGAACCCAATGGAGAAACTAATGGCGAGATTCGTGGCACCTTAACATCGGCACAGAGAGTTACAGCTTCGTCAGCCTACAATGAAGTTGCCCCTGATCCGTATGGAAGGGAAGCTAAACATTTTACTGAGATTCGCGTACTAAATAGAGATGTCCGGATTGTTCTGGAGGGCGTTGACAAGTTTAGCAATTTAATAGGTTCCGTCTATTACCCTGACGGTGAAGCAGCAAAGGACCTCGCACTGGAGCTTATTGAAAATTGGAATGGAAACATTGGCATCAGTGTAGGGGTATTATGGTTACATTACAGGCTTAAAAAGCGAATTCAGGCAATGACAAAGCATCTGATGGTTCCTGTTGCTATTTTGTTACCTGCTTCTGTTCAGGGGTTTGCCAAGTATGTTGAGTGGAGTGCAATCATGATGGAAGATGAAGCCAGGAGGAAGTTGAAGGCTGCAGAACTTCAAGCAAAGAAGAGTAAGTTGAGGCTCTGGACAAATTATGTACCCCCAGCTACAAATTCAAAGGCAATTTCAGATAGTTTCACTGGAGAGGTGGTTGAAGTTGTTAGTGGAGACTGCATCATTGTTGCTGATGATGCTGTACCATTTGGCAGTCCAGCAGCAGAGCGACGAGTAAACCTGTCAAGCATCAGGTGTCCCAAACTGGGAAATCCCCGAAGAGACGAAAAGCCTGCTCCTTATGCCCGTGAAGCAAGGGAATTTCTAAGAACACGCTTAATTGGCCGTCAGGTACAAGTTTCAATGGAATACTCTCGAAAGGTCCCCATGGCCGATGGATCCACTGCTCCAACTGGGCCTGCAGATACAAGAGTAATGGGCTTTGGATCAGTCTTCCTGTTGTCTCAAGGGAAGGATAGCGAGGATGTCTCGCCCGCTCCCCTCCCTGCAGGTGGGCAGCAGCCTGGTGTGAATGTTGCTGAACTCATTATTGCCCGTGGCTTTGGCGCTGTCATTAGACACAGAGATTTCGAGGAAAGATCGAATTACTATGAGAATCTTCTTGCTGCTGAATCACGCGCTACTGCTGGGAGGAAGGGGATACATTCTTCCAAAGATCCTCCAGTTATGCATGTCATGGATCTCTTGACGATTGAAGTAGAAACTGTTGATAGAACCGGTACATTCTTGGGTTCGTTATGGGAATCAAAAACTAATGTCGCTATCACCCTTCTGGAAGCTGGCCTTGCAAGACTTCAGACTTCCTTTGGAACTGATAGAATTCCAGATGCTCACCTTCTTGCTCAAGCGGAGCAGTTTGCCAAGAGACAGAAATTGAAGATATGGGAAAACTATGTCGAAGGAGAGCAAATTTCCAACGATCCAGCTCATGATAGAAAACAGAAAGAAGAATTTAAGGTGATGGTCACTGAGGTCCTTGGTGGCGGCAAGTTTTACGTCCAAGCAGTTGCTGATCAGAAAGTTGCTTCCATTCAAAAGCAACTTGCTTCTTTAAATCTCAAAGAAGCTCCAGTGCTTGGCTCATTCAGTCCAAAGAAGGGCGATATTGTCCTTGCTCAGTTTACTGCAGATAATTCGTGGAACCGAGCAATGATTGTAACTGCTCCACGTGGTGGTGTTCAATCAGCTAAAGACAGATTTGAAGTTTTTTACATCGATTATGGAAATCAAGAAGTTGTTGCGTATAACAACTTGCGTCCTCTGGATCCATCAGTATCGTCTGCACCTGGGATTGCTCAACTTTGCAGCCTCGTGTACCTAAAGGTTCCGACATTGGATGAGGATTACGGTCAGGAAGCAGCTATGCTTCTAAGTGACACCACACTCAATGGTCCAAAGGAATTCAGAGCCGTGATCGAGGAAAAGGATACATCTGGCGGAAAAGTTAAAGGCCAAGGAACTGGGAACGTTCTCTTGGTAACTTTGATCGATGACGAATCTGGTAAGAGTGTCAATGCCATGATGCTGAAGAAACAAGAAGCCATGAATGAATTAGAAAAACACCAATCAGAAGCACATAGACAGCGGTTGGGGATGTGGGAGTACGGCGATATCCAGTCCGACGATGACGAGAATCCTCCGCCCATTAAGAAAACCGGTGCCGGTAAACGCTAA
Protein Sequence
- >Ccrd_023684
MAQAAASSGWLRGRVKAAPSGDTLVIMGFTKAEIPPEKTIVLAHLSSPRLARRGGNDDPFAWESREFLRKLCIGKAKMVTNERKGEEIQSTEGSQGSNSLLTAKSYDPNKKDVVFKTEYTIPNFSREFCSLFVGTTNIAKEVVTHGWAKVKEAKGEVTPEHAELLRLEEQARQQGIGLWNRAPGASAAAIRNLPPSSVGDPSNLDAMGLLAANKGRPMEAIVEQVRDGSSLRVYLLPEFQFVQVFVAGIQAPSMGRRTMAEPTATTEVPSDEPNGETNGEIRGTLTSAQRVTASSAYNEVAPDPYGREAKHFTEIRVLNRDVRIVLEGVDKFSNLIGSVYYPDGEAAKDLALELIENWNGNIGISVGVLWLHYRLKKRIQAMTKHLMVPVAILLPASVQGFAKYVEWSAIMMEDEARRKLKAAELQAKKSKLRLWTNYVPPATNSKAISDSFTGEVVEVVSGDCIIVADDAVPFGSPAAERRVNLSSIRCPKLGNPRRDEKPAPYAREAREFLRTRLIGRQVQVSMEYSRKVPMADGSTAPTGPADTRVMGFGSVFLLSQGKDSEDVSPAPLPAGGQQPGVNVAELIIARGFGAVIRHRDFEERSNYYENLLAAESRATAGRKGIHSSKDPPVMHVMDLLTIEVETVDRTGTFLGSLWESKTNVAITLLEAGLARLQTSFGTDRIPDAHLLAQAEQFAKRQKLKIWENYVEGEQISNDPAHDRKQKEEFKVMVTEVLGGGKFYVQAVADQKVASIQKQLASLNLKEAPVLGSFSPKKGDIVLAQFTADNSWNRAMIVTAPRGGVQSAKDRFEVFYIDYGNQEVVAYNNLRPLDPSVSSAPGIAQLCSLVYLKVPTLDEDYGQEAAMLLSDTTLNGPKEFRAVIEEKDTSGGKVKGQGTGNVLLVTLIDDESGKSVNAMMLKKQEAMNELEKHQSEAHRQRLGMWEYGDIQSDDDENPPPIKKTGAGKR