Information report for BVRB_6g131950
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Citrullus lanatus: Cla97C05G095010
- Cucumis melo: MELO3C014878
- Cucumis sativus: CsGy3G024010
- Glycine max: Glyma.05G077800, Glyma.19G071500
- Gossypium hirsutum: Gohir.D07G234900, Gohir.D09G036300, Gohir.A10G159100, Gohir.A09G038100
- Juglans regia: Jr01_06520
- Manihot esculenta: MANES_15G141800
- Populus trichocarpa: POPTR_001G331400v3, POPTR_017G069300v3
- Prunus avium: Pav_sc0001080.1_g1100.1.mk
- Prunus persica: PRUPE_3G305400
- Rosa chinensis: RchiOBHm_Chr2g0175471
- Vitis vinifera: VIT_14s0068g02140
Gene Resources
- Pfam: PF02201
Sequences
gDNA Sequence
- >BVRB_6g131950
TCTCAAATCAAGGAGTTGATGATCGATTTGTTCTGGGAAATTTAAGTTGAGGGATCTTCAGGGAACTTGAATTTGCAATTGAGTGTGCGAGTGATGAGGTAAAGTTCTGAATTTTTCAGTTTTCAATTTTCAATCTTTAATTTGTATTCTTTGTTTTATATGAAGTTGGGAAATTGAAGAACATAGAGTAGGAAATTAGGGTGGAATTTGTGTTTTTTTGTGTGTGTTGTTTTGTTAGTGGGTATTTTTTGGGATGTCAGCAAATACAAACAATAATCAACCCAAGAATATTGGGGGTTCAATGTCATCCCCATTTGGAAATGCTGGAATGGTAAACCCTAATTTACCCCCTAATTTTAACCCATCATCATCATCCCAAGGTCAAGCACAAAATCAGTCAGGGTTTGGGTTTCAGGGACAGTTTCAACAACTGGCCCATGCCCAAGCTCAAGCTCAAGCTCATGCTATGGCGCAAGCGCAATCGAAAGCAGCTGCTGCTGCCCATGCTCATCTTTTGCAGGCTCAGGGTATGTCCCTTAATCAGTCACAAGGCATGGGGATGGGTAATTTGGGGGGTAGTTCATCACCGTCGATTTCGGGGATGGGAAATTCAGGTGGCAAAAGGGTCCCACAAAAGCCCCCGGTACGCCCGCCAGGACCTTCAGGTGGTCTTAACTTTATGTCCCCTCCTATGAAGAATGTCATGGAGCTTACCCCAGGGGCTGCTGCTAGGAGGAAGAAGCAGAAACCTCAGGAGAAGCATTTGAGTGAGAGGGTTGCTCCTATATTGCCTGAGTCTGCTTTATATACACAGCTTATTGAGTTTGAGTGTCGGGTTGATGCTGCGTTGATGAGAAAGAAGATTGATATTCAAGAGGCTTTAAAAAACCCTCCCTCTGTTCAGAAAACGCTTCGGATTTATGTGTTTAATACATTCGCAAATCAGACTCAGTCTATCCCAAAGAAGCCAAATGCAGAGCCAGCTACTTGGACATTGAAGATAATAGGGAGGATATTGGAGGATGGGATGGATCCTGATCAGGTTGCCGCCATGAAACCAAACCCGATGTACCCAAAGTTCTCCAGTTTCTTTAAGAGGGTTACCATTGGGTTGGATCAGAGACTGTACCCGGAGAACCATTTAATAGTATGGGAAAATTCTCGGTCATCTGCACCCACCGAGGGTTTTGAGGTGAAAAGGAAAGGGGACAAGGAATTCACGGTGAATATTCGATTTGACATGAACTATATACCTGAAAAATTTAAGCTTTCGCAGTCTTTAACAGAACTTCTTGGTATAGAAGCTGAGACTCGCCCGAGAATTATAGCAGCAATCTGGCACTATGTTAAAGCTAGAAAGTTGCAGAACCCAAATGACCCAACCTATTTCAATTGCGACCCACAGCTTCAGAAGGTGTTTGGGGAAGAAAAGATGAAATTTACCATGGTCTCTCAGAATATATCACAGCATCTGACTCCTCCTCCACCAATACAGGTGGATCATCAAATCAAGCTCTCAGGGAATAGCCCTGCTGGAAGTGCTTGTTATGATATATTGGTGGACATACCTTTCCCTATACAGAGAGAGCTTTCCATGCTTCTGGCAAACACTGAAAAGACAAAAGAGGTCGAGACCTGTGATGAAGCAATCTGTGCTGCTATAAGGAAGATCCATGAACACCGTAGAAGGAGAGCATTCTTTCTTGGATTTAGTCAGTCACCAGTGGAATTTATTAATGCATTGATAGAATCACAAAGCAGAGATCTCAAGGCCGTGTCTGGGGAAGCTAGTCGTAGTGCAGAAAAAGAACGCCGTTCAGATTTCTTCAACCAACCATGGTATGTAGCGTTATTACATAGTGTAATCATCAGAATGCCTTTCTTCTTTGTACAATATTCACTGAACTGATATATATATTTGTGCTACTCCTTCAACAGGGTCGAGGATGCTGTTATACGATATTTAACGCGTAAACCAGCCAATGCACCTGATGGTCCTGGCAGCACATAAACAGATTGCTGGTGGATCCTAGCTGTAGGTCTGCTTGTTAGCCTCTACATTACCATTAAAAGCTCAGAGCTCATTTTCTTGTTACTCCATTGTACAACTGTCTGATGTATCCTAATGTTACTATTCACTGCCAAGATCATAATTTGCTTCTGTGCCCATTTGATGCATATCTAAATATTGAGTTACTACTTACTAGTTGTGAAGAAATTTTATCTACTTAT
CDS Sequence
- >BVRB_6g131950
ATGTCAGCAAATACAAACAATAATCAACCCAAGAATATTGGGGGTTCAATGTCATCCCCATTTGGAAATGCTGGAATGGTAAACCCTAATTTACCCCCTAATTTTAACCCATCATCATCATCCCAAGGTCAAGCACAAAATCAGTCAGGGTTTGGGTTTCAGGGACAGTTTCAACAACTGGCCCATGCCCAAGCTCAAGCTCAAGCTCATGCTATGGCGCAAGCGCAATCGAAAGCAGCTGCTGCTGCCCATGCTCATCTTTTGCAGGCTCAGGGTATGTCCCTTAATCAGTCACAAGGCATGGGGATGGGTAATTTGGGGGGTAGTTCATCACCGTCGATTTCGGGGATGGGAAATTCAGGTGGCAAAAGGGTCCCACAAAAGCCCCCGGTACGCCCGCCAGGACCTTCAGGTGGTCTTAACTTTATGTCCCCTCCTATGAAGAATGTCATGGAGCTTACCCCAGGGGCTGCTGCTAGGAGGAAGAAGCAGAAACCTCAGGAGAAGCATTTGAGTGAGAGGGTTGCTCCTATATTGCCTGAGTCTGCTTTATATACACAGCTTATTGAGTTTGAGTGTCGGGTTGATGCTGCGTTGATGAGAAAGAAGATTGATATTCAAGAGGCTTTAAAAAACCCTCCCTCTGTTCAGAAAACGCTTCGGATTTATGTGTTTAATACATTCGCAAATCAGACTCAGTCTATCCCAAAGAAGCCAAATGCAGAGCCAGCTACTTGGACATTGAAGATAATAGGGAGGATATTGGAGGATGGGATGGATCCTGATCAGGTTGCCGCCATGAAACCAAACCCGATGTACCCAAAGTTCTCCAGTTTCTTTAAGAGGGTTACCATTGGGTTGGATCAGAGACTGTACCCGGAGAACCATTTAATAGTATGGGAAAATTCTCGGTCATCTGCACCCACCGAGGGTTTTGAGGTGAAAAGGAAAGGGGACAAGGAATTCACGGTGAATATTCGATTTGACATGAACTATATACCTGAAAAATTTAAGCTTTCGCAGTCTTTAACAGAACTTCTTGGTATAGAAGCTGAGACTCGCCCGAGAATTATAGCAGCAATCTGGCACTATGTTAAAGCTAGAAAGTTGCAGAACCCAAATGACCCAACCTATTTCAATTGCGACCCACAGCTTCAGAAGGTGTTTGGGGAAGAAAAGATGAAATTTACCATGGTCTCTCAGAATATATCACAGCATCTGACTCCTCCTCCACCAATACAGGTGGATCATCAAATCAAGCTCTCAGGGAATAGCCCTGCTGGAAGTGCTTGTTATGATATATTGGTGGACATACCTTTCCCTATACAGAGAGAGCTTTCCATGCTTCTGGCAAACACTGAAAAGACAAAAGAGGTCGAGACCTGTGATGAAGCAATCTGTGCTGCTATAAGGAAGATCCATGAACACCGTAGAAGGAGAGCATTCTTTCTTGGATTTAGTCAGTCACCAGTGGAATTTATTAATGCATTGATAGAATCACAAAGCAGAGATCTCAAGGCCGTGTCTGGGGAAGCTAGTCGTAGTGCAGAAAAAGAACGCCGTTCAGATTTCTTCAACCAACCATGGGTCGAGGATGCTGTTATACGATATTTAACGCGTAAACCAGCCAATGCACCTGATGGTCCTGGCAGCACATAA
Protein Sequence
- >BVRB_6g131950
MSANTNNNQPKNIGGSMSSPFGNAGMVNPNLPPNFNPSSSSQGQAQNQSGFGFQGQFQQLAHAQAQAQAHAMAQAQSKAAAAAHAHLLQAQGMSLNQSQGMGMGNLGGSSSPSISGMGNSGGKRVPQKPPVRPPGPSGGLNFMSPPMKNVMELTPGAAARRKKQKPQEKHLSERVAPILPESALYTQLIEFECRVDAALMRKKIDIQEALKNPPSVQKTLRIYVFNTFANQTQSIPKKPNAEPATWTLKIIGRILEDGMDPDQVAAMKPNPMYPKFSSFFKRVTIGLDQRLYPENHLIVWENSRSSAPTEGFEVKRKGDKEFTVNIRFDMNYIPEKFKLSQSLTELLGIEAETRPRIIAAIWHYVKARKLQNPNDPTYFNCDPQLQKVFGEEKMKFTMVSQNISQHLTPPPPIQVDHQIKLSGNSPAGSACYDILVDIPFPIQRELSMLLANTEKTKEVETCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAVSGEASRSAEKERRSDFFNQPWVEDAVIRYLTRKPANAPDGPGST