Information report for BVRB_5g110370
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Actinidia chinensis: CEY00_Acc26818, CEY00_Acc22071
- Citrullus lanatus: Cla97C09G177920
- Juglans regia: Jr09_04920
- Lactuca sativa: gene-LSAT_1X29121
- Populus trichocarpa: POPTR_012G096700v3
- Prunus avium: Pav_sc0000063.1_g080.1.mk
- Prunus persica: PRUPE_5G152300
- Rosa chinensis: RchiOBHm_Chr7g0190351
- Vitis vinifera: VIT_14s0068g02140, VIT_17s0000g01500
Gene Resources
- Pfam: PF02201
Sequences
gDNA Sequence
- >BVRB_5g110370
AAAGACAAACTGCTTTATTTGCAACAACTCTGGGAGTCGCCCGCACACAAAAACTGAGTAATACTCCAAAGATTGCAGTTTGGGCATATACATCAAAATCCTAGACTTCTTCACAGAATCACCATTTTAGAGCTCTCAGAAGTACTTGGACCAAACTTTATTTTCTTTCCCATGTACATGGAATAGGTTGAATCTTATCATTGCACCTCATGTTGAAATCATCTCCTTGCCAAGCAATACCAGCAATGATATTGACAGCAATTAATCAAAGAAAGAGATATAAATAATCAACACAGTGAACTCGAAAGTGAAAATGATGTACTCATACCTCCGCGATTAATTGATGGCAAAAGATTCATAATTCCTACAAACCAGCACCATATGAGTGACAGACACTACATCAGTCAAGATAGGAGTCCAGGAAAAATGAACAATATACTTATTGCCTTGTTCGACGAGACATAGAAGTATTACATAAAAAAAAATGAGCTACAGGGTAAAATTTTTACTTCATCCAAAATTAGTGGTTGCAGCAGAGATTAGGGATTTCGACATGCTCAGAGTGTCATCAATCATGCTACACTTTCTTTACAAGAGTACAACACAAACCGAAGTCCTAAAGCATAGATGCCTATGATAATATTGACATGTTATCTACTCTAGGGTGCTTGTAATATCAAGCAAAAACATCTCACGTGAAATCTTTTGACACAAAATAAAAGGTTTGATTATCAGCAGTCAACAAGCAGTAGCAGTGTACCTATTTAGATATCAATGACTTCAGGCAATCTAAATCATGTAGTCCCTGCAGCATCACCTCCAGCACCAGATTTGCGATTCAAATAACGCATCACAGCATCTTCAACCCTAAAACAAACATAAAAAAAATATATCAGATTAATGATTAAACAAACAGGTCATAAAAACAAAGAGGAAAACAGCATTGCAACTAGCTTGGCAACAGAGCATTTCTTGTATATTTCACTAATTTCAGCAACCAGGCCATTACTGATAAATCAAATGCCCACCAAATGAACCAACCAACAGGAATTTCTGTACAAAAGAAGTCAATCCAAAACAAGTTCCAAAGAAAGCATGAGAGCACTTGTAAGTTGTAATTTTGTGACCACAACTAGTAGTCATCCCTTCAGCACCTAGCACCTTTAATCTCGATCTAATTATTCTCTTCCGCTAGTATTTCTTGCTCAAAGACATCCATTCATGCATACAGTAATTAAAGAGTAACAACGAGCACAGTGCTCAGACTAACAGACTCAGACTGAGACATGATATCAAGTCCTAGACAATTGAAAATTCGATATGGTATATACCTAAGAAGTCAGAACTAGCTGACGAATAATCAGTAATCGCTAGCCTGGTGACCTTCCTGCCAAATGTTATGATCAAACACTTACTGCTCGAAGGGGTGGTGCACCTGGAATGACAGGGATAAGGGGGATATTTAAAAGGCTAAAATACTTGATTGGAATGGGTGGAATGGAGAGAGAATTATAAGGGCAAACCTATTACCTTAAAATACATTTTAAAACAAGCCACCCGGTATCCCCTCCCTATCTCTCACATATTTACTCTCAGATCCGCGGGTGGAAGTCATCAGCGACCACTCACCAACCCTTTCGATGGCAACTGTGCACTGTTCATTGCAACAGTCATCCTCTATCTTTTTCCCCTTCCTAGATCTTTTAGTGCTATCTTATCTCTTCCCTCTCCTTTCTTCAGCAGTAAAAAGACATAGGCAGTGTCCAGCTCTAGACAGAGGAACAACCAATTTGACGATGTTGCCTAATTTTGCATGGGAAAGAAAAGACGCGACAGAGGTAGTTAACGTGAAAAATGATGCCCTTGATAATCCCAAACTCGAATAAAGGAAACGAAACACTGCCCTAAAATAATTTCTCTTGGGGACTCCCCCCCCCCTCCCCTCCCACCTAAACCCTAATCAATCCTTAATTGCAGGTGCCATGTGTGCCCTTGAATTTGACATTTGATTTCTGATATCAAGTTGAAACTTTTAATCCTAAGAGCATGTACAATGGCAAGACCAACATCCCACTGGTCTACCATTTTTCACTTTTCTCTCCTTTCCTTCTTACACCTCACATGCCACTAATTATCCATCAACTCATCATTTTTTTCCTTTACAATGGGTGGGTTGGTCTTAGTTGGCCTTTCTATTTCTCTCTCTCTTTTACTATACCCCACCATGTACTCTCTCTCCTACCCAATAATTTAATATATCTTTTTTCCCTCTCTCCAGGCACGTGCACCACTTTAATGGTGATGGCTCTCCACCCCAAGCAGATGTTGGTCTTTAATCCTTCCCCCGCGAATCGCGAATTGAGAAAAGCGAATTATGGTCGGTTTTGGTTCATTTTTGGCTCATTTTGGGCGAATTGGCGAATTCAAAAGGCAAATTAGATAGCAAATTAGGTAACACTGTCCAAGACCAAGTCTTCCTCCCCCATAGTTAGACTAGTCTTCTACAACAACAAGACTAAATAAGACTTACTCTTTCTCTTCTAAGACCAAGTAAAGACCAACCTGTTGACATGCTCTAAGAACTACATCACCCAATGAACACGAGAAGAATGAAACACATTATTTCAATCCACCACTAAATTTTGACTCAAATTTCAAACAGCTACAGAGCATAAGAAAGCTGAAAGTGATAAACTTTCAGAAAACATTACAAAGCAACAATACTCCATGGAACTAAAGGGTCTAACAAGGCTGCCTGTGACAGACCCCTTAGCGCCCAGTCAAGGAAAATAAACGTGGACACAGTTGCGTCCACGGTAATGATCGCATTGACGCAGAAGCAAGTTCAATCAGATGATGAAACGAATCGCGGCCAGCACGGCGTGAATTTTATAAAAATATTTATTGAAGAGGTTTAACCTCATTTTCAGATTTTAAGTTGAAGAAGTATTATTTGAACATAATAAGACTAAATCTATCATAAAATGATTGGGTAACACGTTTCGTGAATGACTAATTATATAATATAGTATGTTCCATTTAAAACATATTAAGTGGTAGTTCTATTATTTCATTGGATAGTTTGGACCAAAGAATGGATGAAATATGCAAAAATCTAAAGAGACGAATTATCATTACGTTAAGGACGACAAGAAGAGAGTGACGTGAATATCATTACAGCATTATGTAAAGGGGTTCGACTAATGACATCTCAGAAATTCGTTACAACTCGGCCATTATGTAACGGTATGACCAAATGTTTCATTCCATCCCCATACAACTTAGGCAAAAGCATTGTTAGTAGCACTCATTTGAGGGACTTTTGGACTTGCTGAAGGGTGCATGATCCAATACTAAAGACACAACAGTTTAATCACCTAGCACTGATTTGATGGAATGCATGTGCCTACTATCTCTTTAGTTATCAGTAGTATAAAGATGAAGCAAGAATACCAGATCAGTAAGGACACAGCAGTTTAACAAAATCATCAATATTTGCATCTGAGGTTTCCAAAGTAAATTTTTGTTCTCTTCTAGGAGCTCTCTAGAGCACCAGGTAACTTCACAGCTCCACCAAGTTTATGGTCCAGTATTTTTTCACATTACCTACCCTTGTACAAATATGCTTTACTTCCTCCACACTTCCATCACGTCCTCTGTCCATAATCTATAAATAATTATTGTTGTCCCCTCTATCTGAAAACAGATGACATCAAAGCCTGGCTGAAGAGCGATCAAAAATTAAATGTTATTATTGGCGAAATGAGTTGATGTCATGATTGCAAAACCAAAGTAGATCTAAGTTATCATCGAATCATAGACAGATCCCAACAGAAGACTTCCAGCAAACACTTCTGAACATTCTTTTCATGAGCATCATTTCAGTTTGAAATGCCTCCATATATCAAAGTTCATATCATAAACAAAATATTTTATGTCGATACCACCATAATTAAGACCAATTTCTACAATGATACCTTTTGGATGACTTTTGTATCGAAAGATATTGATGTTGTTAAAACTAACTTCTGATATGACATATTTGAAAGACTATTACACAAGATGGTGATTGTGTCCATTTTTCATTCAAAGAAAAAAAAATGACAATGATCCAAAATAAAATCTTGCTCCCCTTTTGGAATTTATCAGAACAAAGTGATTCAAAACCAAGCGGAGTTTCAAGATTGTGCATCTTTCATTCTTTTGCGTTCTCATATTTATACCCCAAAGAGGCAAAGATAATTGAATAATCTAACAACATGAAAAGCTCTTTGAGCTATACTTTCTTTCTCACTTGGCTCGGGGTCTTTTCATTAAGTAACATGTTGAGAAAGTACTTGCAGACATGGTCCGCAAGCCAAATCAAGCTACCGAAGTCGCCAATTGCTACAGCAAGACTCATTTTGCATAGCAAGAAAAAGCACTTGACAGAGAGTTCCAAGCAATCCAAGAAGCAGAAAAAGAAAACAAAATAGCTTGTCCACTTTCCATCAAGATCCGACATTATAAGGCATTATTACAGACAAGATTTGAGTTTTTGAGGCTGAAAGTTTGGGTTACTGAATATTTCATGGAGTGAAAAGTAAGATTTCTTTTTCCAACTCAATAGTTCACGAATACAAAAGCATGAAATAATAGAAACATGAATTTTACGATGAATAATTTAGAATATGGATCTGTTGTCATGCTTTCCATTTGCATCCTGAGATCTAAAAAGGTGCATACTCACATAAAAAAAGCCAATGTAGTGGAATATATTGTTACACGAGGAATCATTCTTCTCCTCTCACAACATTTCTATTCACTGTCTCCGTGTAAACAACACTCTAACAATTAACGTGATAAATGGTAAAGGTGATCAATAAGAATGACAGAGCTTGCTGCCTCTACCTGCTATGCATCCATCCCACTCTTGCCACTGTTATACATCGACTCACCCAGCCTAAGCCAGCTATCCGCTTTACTTTACTAGACATTGGGGAAAGGGTAGGATGGGAATCACATCCTAATTCTCCTGAGATTCTGTTTTGGAATCCCCTGAGAATGAAGTCGTGCACATTTAAGGAACTCCGCGCAGAAGTTGGTTACAGAGAGAGAATGATGTAATGGGAGAGGGAATACGAAAAAGGGAGAAAGTCTAATGGTCCAGCCACTCTAGAGATAAATGCCTTTCTCTTTCTGATTTCACCAGCCACTCTAGGGTTCGGGGTTATAATGGTGATATGCTAACATCAATATTACAATCAACTATCCATTACTATAGAAGTTCGACATTTGTTTCTTCTTCTTACTTTGCAAATTTCTTTCATCTTCACCTACTCTATTACAGCTCTTCATCTATTCTATTACAGCCACATGATATCATCCAAGCCATCTACTTCAAGGTGGAAAATCAATTTGCAAACCACATTAGGACAATTTTTTTGACAAAATCAAGTTCCAGGGTTACGATCCCCTACTATGGCTACAAGGAATTTCACTACCCATACTATAACAATGCTAAATATTGATTGTATATGAGACACATTAGTAAACAATGAAAGAAGTAATGATGGGCCTTACCAAGGTTGGTTGTAAAATTGACTTCGATGCTCTTTCTCGACATTACGAATAGCATCACCAGCAATGACCTTCAAATCTCTATCTTGAGAAGCAATCAGTGTGTTAATAAACTCGGCAGGTGACTTACTAAATCCGAGGAAAAATGCTCGTCTTTGATGATGCTCATTGATCTTCTTTATAGCAGCAACAATAGAACTGTCATAATCATCTATTTCTCTACATTTCTCCATCTTCTCCAAGAAACCAGACATATCTTTCTCTAAAGGAAAGGGAACATCAACTAACACATCATAACAAATATTTCCACTAGGATTATTCCCCGAAAGCTTAATCTTATGCTCCAAATGTATAGGTTGCAAAGGTGACAAATGTTGTGTGAGCTTCTGTGAAGCCACAGCAAACTTAACCTTCTCTTCTCCAAATACTTTCCTTAGAGTTGAATCACATGTAAACACAGCTGGATCATTAGGGTCTTGCAACTTCTTAACCTTGACATAATGCCACAATGCAGTCATAATCCTAGCACGCGATTCGACCTCAATTCCAAGAGCTTGAGTTAGAGCAGCTGATAACTTAAACTTCTCAGGAACATAATTCATTTCAAGCCTTATAATAGCAGTAAATTCCTTATCCCCTTTCCTTTTCACCTCAAACCCTTCATGAAGAACTGGAGAACGCGAATTCTCCCACAAAATCACATGGTTATCAGGATAAAGTGTTTGATCCAAATAAATTGTAATTTTCTTAAAAAACGACGAGAATTTCGGGTTCGAAATACACCTATTAGAATCAACCCCATCATCTAACACAGTACCAGTTATCTTAAGCGTCCAAGTGGGTGCATCACCATTTTCATCTAATTGATTAGCAAATGTATTGAACACATAAATTCTAAGAGTTTTCTGAACAGAACAAGGCTTTTTAACAGACTCCTCAATTTCAGTTTTCTTCCTACCAAGTGCAGAATCAACCTTGGCTTCCAATTCCACTAACTGAGTATAAAGTGCACTTTCCGGCGAAAGGGCAGCCACTTTTTCGGGCAATTTCTTCTCAGAAGTCTTCCTTTTCTTCCGCCGAGACGCCGGGGCTAGCTCCATTGTCTTGAAAGGCGTGCCCCCGCCCGTGCCGGAAGAGCTTTGCGGCTTATTAGGGTGTTTGCCGTGACCTTTCTTGGTGTTTGAGCCACCCGCCGGAGATGGCGCACGGGGAGTGGGGGTAGTTGTTTGGGTTGAGGGACGGGGTTGTGTGGGCTGAACCATTGATGGAGGTTGAGTTTCAGACATGGTGAAATTTGTGAGGCACACCAACTGTTTGTTGATTTGTTTGTTAGATAAATTGGGCTTTTGGTTTTGGTTGCAGAGATCAAGATTAGTGGTGTGTGTGTGCAAGAGAGGTTTAGTGGGATGAATTTGCGCGGAATGTTTGGAATTTCCTCGAAATTGTTCCTTGAACTATTCGAATTTGATGGCGGAAATACGAACTTGTGGTTTTAGGAAGGAGAGCTGGATGGGAATGGGTGAATCTATATCTATAAAG
CDS Sequence
- >BVRB_5g110370
ATGGTTCAGCCCACACAACCCCGTCCCTCAACCCAAACAACTACCCCCACTCCCCGTGCGCCATCTCCGGCGGGTGGCTCAAACACCAAGAAAGGTCACGGCAAACACCCTAATAAGCCGCAAAGCTCTTCCGGCACGGGCGGGGGCACGCCTTTCAAGACAATGGAGCTAGCCCCGGCGTCTCGGCGGAAGAAAAGGAAGACTTCTGAGAAGAAATTGCCCGAAAAAGTGGCTGCCCTTTCGCCGGAAAGTGCACTTTATACTCAGTTAGTGGAATTGGAAGCCAAGGTTGATTCTGCACTTGGTAGGAAGAAAACTGAAATTGAGGAGTCTGTTAAAAAGCCTTGTTCTGTTCAGAAAACTCTTAGAATTTATGTGTTCAATACATTTGCTAATCAATTAGATGAAAATGGTGATGCACCCACTTGGACGCTTAAGATAACTGGTACTGTGTTAGATGATGGGGTTGATTCTAATAGGTGTATTTCGAACCCGAAATTCTCGTCGTTTTTTAAGAAAATTACAATTTATTTGGATCAAACACTTTATCCTGATAACCATGTGATTTTGTGGGAGAATTCGCGTTCTCCAGTTCTTCATGAAGGGTTTGAGGTGAAAAGGAAAGGGGATAAGGAATTTACTGCTATTATAAGGCTTGAAATGAATTATGTTCCTGAGAAGTTTAAGTTATCAGCTGCTCTAACTCAAGCTCTTGGAATTGAGGTCGAATCGCGTGCTAGGATTATGACTGCATTGTGGCATTATGTCAAGGTTAAGAAGTTGCAAGACCCTAATGATCCAGCTGTGTTTACATGTGATTCAACTCTAAGGAAAGTATTTGGAGAAGAGAAGGTTAAGTTTGCTGTGGCTTCACAGAAGCTCACACAACATTTGTCACCTTTGCAACCTATACATTTGGAGCATAAGATTAAGCTTTCGGGGAATAATCCTAGTGGAAATATTTGTTATGATGTGTTAGTTGATGTTCCCTTTCCTTTAGAGAAAGATATGTCTGGTTTCTTGGAGAAGATGGAGAAATGTAGAGAAATAGATGATTATGACAGTTCTATTGTTGCTGCTATAAAGAAGATCAATGAGCATCATCAAAGACGAGCATTTTTCCTCGGATTTAGTAAGTCACCTGCCGAGTTTATTAACACACTGATTGCTTCTCAAGATAGAGATTTGAAGGTCATTGCTGGTGATGCTATTCGTAATGTCGAGAAAGAGCATCGAAGTCAATTTTACAACCAACCTTGGGTTGAAGATGCTGTGATGCGTTATTTGAATCGCAAATCTGGTGCTGGAGGTGATGCTGCAGGGACTACATGA
Protein Sequence
- >BVRB_5g110370
MVQPTQPRPSTQTTTPTPRAPSPAGGSNTKKGHGKHPNKPQSSSGTGGGTPFKTMELAPASRRKKRKTSEKKLPEKVAALSPESALYTQLVELEAKVDSALGRKKTEIEESVKKPCSVQKTLRIYVFNTFANQLDENGDAPTWTLKITGTVLDDGVDSNRCISNPKFSSFFKKITIYLDQTLYPDNHVILWENSRSPVLHEGFEVKRKGDKEFTAIIRLEMNYVPEKFKLSAALTQALGIEVESRARIMTALWHYVKVKKLQDPNDPAVFTCDSTLRKVFGEEKVKFAVASQKLTQHLSPLQPIHLEHKIKLSGNNPSGNICYDVLVDVPFPLEKDMSGFLEKMEKCREIDDYDSSIVAAIKKINEHHQRRAFFLGFSKSPAEFINTLIASQDRDLKVIAGDAIRNVEKEHRSQFYNQPWVEDAVMRYLNRKSGAGGDAAGTT