Information report for BRADI_5g07730v3
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Arabidopsis thaliana — AT5G14170
Gene Resources
- Pfam: PF02201
- UniProt: I1IX10
- EMBL: CM000884
- KEGG: bdi:100832204
- OMA: NFRCNEP
- InterPro: IPR003121 , IPR019835 , IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47592
- PROSITE: PS51925
- Gene3D: 1.10.245.10
- OrthoDB: I1IX10
- CDD: cd10568
- eggNOG: KOG2570
- STRING: 15368.I1IX10
- HOGENOM: CLU_023529_1_0_1
Sequences
gDNA Sequence
- >BRADI_5g07730v3
GACCTTGTCAGTCGTCTATCTTCCACCTCTCCAAACCCTAGCTCTCAAATCCCCTTCCTACCGAGATCGGATCTTGATCTCCCCGCCCCACCGCCGTCATGGCCACCGGCGGAAACCCCAACCCCGCCGCCGGCCCTGGCCACCCACGCCAGCCACAGCCCCCGCAAGGAAGCTCTCCGGCGACGCCGCACACCCACATGCGCCCTCCCTCTCTCGCCGGCTCCCCCTTCCAGGGTCTCTTCAACACCCCGCCTAGCCACAGCCCTGCTTTCCAGATTCACATGGGCGCCTCCCCTTCCCCTCAGACCCCGCTAATGGCCGCGGCAGCCTCCGCTGCCGCCTCCGCCAAGCGCCCTCCCCAGAAGCCCCCTTCGCGTCCACCGGCACCCACATCCTCCGCTGCTGCTGCGGCGGCGGCGGCGTCCATGGCTGCAGCTTATAAGGCTGCTAACGCAGGCGGCATCGACCTCACCCCCGCCGCACGCCGCAACAAGAAGCGCAAGCTCCCGGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTTCCAGAGTCCGCGCTCTACACGCAGCTGCTCGAGTTCGAGGCCCGCGTGGACGCAGCGCTCGCGCGCAAGAAGCTGGACATCCAGGAGGCGCTCAAGACGCCGCCGTCGCTCCAGCGAACACTCCGCATCTACGTGTTCAACACCTTCTCCAACCAGGCGGCCCGCACCATCCCGCCGCCCAAGAACGCCGAGCCGCCCACCTGGTCACTTAAAATCATCGGCCGTGTGCTTGAGGACGGTGCGGAGCTGGACCCAGCAGGTGTCGTACCCAAGCACAACCCGGCGTATCCCAAATTCTCTGCGTTCTTTAAGAGGGTGACTATTGGGCTTGACCCATCACAATATCCGGAGAACCATACGATTGTTTGGGAGAATGCGCGGTCTGCTGCGCCGCAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGACAGGGAATTCCTTGCGAATATCCGTCTAGAGATGAACTATACACCGGAGAAGTTCAAGCTGTCTCAGCCATTGATGGAGGTCCTTGGGGTTGAGGTGGACACTCGTGCAAGGGTGATTGCTGCCCTTTGGCAGTACATCAAGGCAAAGAAGCTGCAGAATCCAGGTGATCCTTCGTACTTTATATGTGACCCTCAGTTGAAGAAGGTATTTGGGGAGGATAAGATGAGGTTTGCGATGCTGTCACAGAAGATATCACAACATCTTGCACCTCCACCGCCCATCAACTTGGAGCATAAGATTAAGCTATCAGGAAATCAAGCACATGCGAGTGCTTGCTATGATGTGTTGGTGGATGTTCCTTTTCCCCTGCAGAAGGAGATGGTGGCATTTCTCGCCAATACTGAGAAGCACAAGGACATTGAGGCTTGTGATGAGGTTATATCTGCTTCAATCAAGAAGATCCATGAGCATCGCAGGAGGAGGGCATTCTTCCTTGGGTTCAGCCAGTCCCCAGTGGAGTTCATCAATGCGCTGATAGCATCCCAGAGCAAAGATTTGAAGCTCGTTGCTGGGGAAGCAAATAGAAACATTGAAAGGGAAAGACGAGCAGACTTCTATAACCAACCATGGTAAGCTCAAGCGACGTCTCAAGGTTTCATTCTGTATGTTTGCTGCTTAAATTTATTGTTTGTACATATGCTGACTAAACTTTCTTCCATTCCACAATGAATAGGGTTGAGGATGCTGTTATAAGATATTTGAACCGTAAGCCGCCTGGCGGCAATGAAGGCCCAGGTGCTGGTGGTTCTTGAGGAGAAGATTGCTGTAGCGACCTTTGCTGTAGAATCAAGTTGTCTGTCCTGTATTAGTAAAATTCCAGAGACGTAGTGACAGGAGAATTATTTGGTATTGCAGAGGAACCTGGCAGGATTACCTCCTGCCTGCTTAAGTGATTAGCTATTGTATGATGTGTTTGTGATCCCCGATATCATGGTAAATGCTGAACCTAAATATGTTTTAGTCCGTCTTGCACATGTTGCCAGAAGGTTAACTTTGAATCACCGTTGGTATGGAGGTGTCATTCGTGTGGAGTCAATGAGGAAGCTGTTGAGAGGACCTGAGAAAGTGGCCCTTTTGTATTTGAATGTGGAAGTGGAGGGAAATGCAAAGAGATGTCTCAGTCCCTGCCTTGTACTACCTGGTGGATTAGTTCGTTCGCTTTTGGTTTGCTGACAGGTTTGTCACTTAAGATTATTTTTTTCGTGGAAGCTTTTTCCCGACTGGGATAACTAATGAGTAATATCTGTTTCTTTCTATTCCTGGCAGACTAGTATTCTGAGATTTTCCTTGGACATGCCATTCTTGCCCCCATATGCCCTGTGTATGCCACCGTGTGGCATTGTTGTAGGAATTTCAATTGAATTGGTTCTCGGAGGATTGCAACCTTTGGAAATTACGTAGGATTGTGACCCATATGGTTTTCTACGGGTTCTTTTGCAGTACATGTGTGCACACAAAGCTGCATCCACACCACCAACCTACTCCGTATTTGGGAACGAATATTGCGTTTT
CDS Sequence
- >BRADI_5g07730v3
ATGGCCACCGGCGGAAACCCCAACCCCGCCGCCGGCCCTGGCCACCCACGCCAGCCACAGCCCCCGCAAGGAAGCTCTCCGGCGACGCCGCACACCCACATGCGCCCTCCCTCTCTCGCCGGCTCCCCCTTCCAGGGTCTCTTCAACACCCCGCCTAGCCACAGCCCTGCTTTCCAGATTCACATGGGCGCCTCCCCTTCCCCTCAGACCCCGCTAATGGCCGCGGCAGCCTCCGCTGCCGCCTCCGCCAAGCGCCCTCCCCAGAAGCCCCCTTCGCGTCCACCGGCACCCACATCCTCCGCTGCTGCTGCGGCGGCGGCGGCGTCCATGGCTGCAGCTTATAAGGCTGCTAACGCAGGCGGCATCGACCTCACCCCCGCCGCACGCCGCAACAAGAAGCGCAAGCTCCCGGAGAAGCAGCTCCCCGACCGCGTCGCCGCGCTGCTTCCAGAGTCCGCGCTCTACACGCAGCTGCTCGAGTTCGAGGCCCGCGTGGACGCAGCGCTCGCGCGCAAGAAGCTGGACATCCAGGAGGCGCTCAAGACGCCGCCGTCGCTCCAGCGAACACTCCGCATCTACGTGTTCAACACCTTCTCCAACCAGGCGGCCCGCACCATCCCGCCGCCCAAGAACGCCGAGCCGCCCACCTGGTCACTTAAAATCATCGGCCGTGTGCTTGAGGACGGTGCGGAGCTGGACCCAGCAGGTGTCGTACCCAAGCACAACCCGGCGTATCCCAAATTCTCTGCGTTCTTTAAGAGGGTGACTATTGGGCTTGACCCATCACAATATCCGGAGAACCATACGATTGTTTGGGAGAATGCGCGGTCTGCTGCGCCGCAGGAAGGGTTCGAGGTGAAGAGGAAAGGGGACAGGGAATTCCTTGCGAATATCCGTCTAGAGATGAACTATACACCGGAGAAGTTCAAGCTGTCTCAGCCATTGATGGAGGTCCTTGGGGTTGAGGTGGACACTCGTGCAAGGGTGATTGCTGCCCTTTGGCAGTACATCAAGGCAAAGAAGCTGCAGAATCCAGGTGATCCTTCGTACTTTATATGTGACCCTCAGTTGAAGAAGGTATTTGGGGAGGATAAGATGAGGTTTGCGATGCTGTCACAGAAGATATCACAACATCTTGCACCTCCACCGCCCATCAACTTGGAGCATAAGATTAAGCTATCAGGAAATCAAGCACATGCGAGTGCTTGCTATGATGTGTTGGTGGATGTTCCTTTTCCCCTGCAGAAGGAGATGGTGGCATTTCTCGCCAATACTGAGAAGCACAAGGACATTGAGGCTTGTGATGAGGTTATATCTGCTTCAATCAAGAAGATCCATGAGCATCGCAGGAGGAGGGCATTCTTCCTTGGGTTCAGCCAGTCCCCAGTGGAGTTCATCAATGCGCTGATAGCATCCCAGAGCAAAGATTTGAAGCTCGTTGCTGGGGAAGCAAATAGAAACATTGAAAGGGAAAGACGAGCAGACTTCTATAACCAACCATGGGTTGAGGATGCTGTTATAAGATATTTGAACCGTAAGCCGCCTGGCGGCAATGAAGGCCCAGGTGCTGGTGGTTCTTGA
Protein Sequence
- >BRADI_5g07730v3
MATGGNPNPAAGPGHPRQPQPPQGSSPATPHTHMRPPSLAGSPFQGLFNTPPSHSPAFQIHMGASPSPQTPLMAAAASAAASAKRPPQKPPSRPPAPTSSAAAAAAAASMAAAYKAANAGGIDLTPAARRNKKRKLPEKQLPDRVAALLPESALYTQLLEFEARVDAALARKKLDIQEALKTPPSLQRTLRIYVFNTFSNQAARTIPPPKNAEPPTWSLKIIGRVLEDGAELDPAGVVPKHNPAYPKFSAFFKRVTIGLDPSQYPENHTIVWENARSAAPQEGFEVKRKGDREFLANIRLEMNYTPEKFKLSQPLMEVLGVEVDTRARVIAALWQYIKAKKLQNPGDPSYFICDPQLKKVFGEDKMRFAMLSQKISQHLAPPPPINLEHKIKLSGNQAHASACYDVLVDVPFPLQKEMVAFLANTEKHKDIEACDEVISASIKKIHEHRRRRAFFLGFSQSPVEFINALIASQSKDLKLVAGEANRNIERERRADFYNQPWVEDAVIRYLNRKPPGGNEGPGAGGS