Information report for BRADI_3g11600v3
Gene Details
|
|
Functional Annotation
- Encodes a nuclear localized AT hook domain containing protein that can bind AT rich DNA in vitro. Overexpression of the gene results in delayed flowering. Is likely to act redundantly with AHL18, AHL27 and AHL29 in the regulation of flowering. It is also involved in both photo- and skotomorphogenesis.
Homologous
- Capsicum annuum: T459_00449
- Daucus carota: DCAR_006873
- Gossypium hirsutum: Gohir.A07G145400, Gohir.A08G133400, Gohir.D07G151600, Gohir.D08G154600
- Manihot esculenta: MANES_05G044200, MANES_01G265000
- Musa acuminata: Ma01_g03590, Ma02_g05050
- Nicotiana attenuata: A4A49_08907, A4A49_28834
- Populus trichocarpa: POPTR_014G070800v3, POPTR_002G149300v3
- Sesamum indicum: SIN_1013970
- Solanum lycopersicum: Solyc01g091470.3
- Solanum tuberosum: PGSC0003DMG400003920, PGSC0003DMG400012769
- Vitis vinifera: VIT_15s0048g00780
- Zea mays: GRMZM2G105498, GRMZM2G035077
Gene Resources
- Pfam: PF03479
- UniProt: I1HZZ6
- RefSeq: XP_003573204.1
- EMBL: CM000882
- KEGG: bdi:100834416
- OMA: DFQLHHH
- InterPro: IPR005175 , IPR014476
- PANTHER: PTHR31100 , PTHR31100:SF15
- SUPFAM: SSF117856
- PROSITE: PS51742
- Gene3D: 3.30.1330.80
- OrthoDB: I1HZZ6
- CDD: cd11378
- eggNOG: ENOG502QRBV
- STRING: 15368.I1HZZ6
- HOGENOM: CLU_039808_2_1_1
Sequences
gDNA Sequence
- >BRADI_3g11600v3
TGAGTAGAAACATAATGGATATGAATCTATGTCATATAATTATATATTAGTATAGTAATTTATGGCCAAAACATTAGTCAAAGAAAGCTAATACGTCCCATATTGTTAGACGGAGGGAGTATATGAAAAAAGTCAGAGGGAGAGAGATGGCTAGAGAGAGAAAATGCAGGAGGAAATACTAAAGGAGTAGATAGCTTTGTTAGATGCCCTAGCTAGAATCAGCTGAGAAGTTGGTGGTTGACATGAGAAGTGCCTTGCTGTGTCTGGTTCCTCGTCTGCCTCTTCCATTTTGTTTGTCTGGTGAGGGGTAGTAGCGGTGGTGGTGGTGTCCCTCTCCTCTTCCCCCTCACCTATACTATATCATTATTCTAATCAAATGGTAAAGTGGACAGAGAGGGAAAGGGGAAGGAGCAGGGCGCCGTCTTCCTTTTCCCTCGCCTCATCACAAGTCGCAACACACCGCAAACCAAGCATGCAACCCATAGCTTTCCTTGCTTAATAATTAGCCAATTCTCGGGGGTCCTCCTCCTCCGGCCCCTTATTTACTCCACCACCGGTCCTCCCTTTGCTTTCGTTGCCACTGTTCCATCTCGTAGGTTTCGTCGTCCCTTGCCGCATGAGAGCTAAATTTGTGAGTAGATAAGATAGAGGCGGAATAAAAAAGATCTGGCAAGAAAAAGATCGAAGGCGGAGAGTGAGGGGAAGAAATTTAAGAATAACCTAGCTGTAGTAGCAAGCTTGTTGGGAGAGCAGCTAGCATGGATCCGGTTACGGCATCCATACACGGTCACCATCTTCCTCCACCGTTCAACACCCGCGACTTCCATCACCATCTCCAGCAGCAGCAGCTGCTGCATCTCAAGACCGAGGACGACCAGGGCGGCGGCACTCCAGCTGCTGGGGCCTTGGGCGGCCGCGGCACCAAGCGCGACCACCACGACGACGACGAGAACAGCGGCAACCATGGAGATGGCGGTGGCGGTGAGCTCGCCCTGATCCCCACTTGTGCTAATTCAGGTGGTGGCGGATCAGGCGAGAACGGGTCGCGGCGCCCGAGGGGCCGGCCTGCCGGGTCAAAGAACAAGCCAAAGCCGCCCATCATCATCACGCGGGACAGCGCCAACACGCTCCGCACGCACGTCATGGAGGTTGCCGGCGGGTGCGACATCTCCGAGAGCATCACGGCGTTCGCCCGCCGCAGGCAGCGCGGGGTGTGCGTGCTCAGCGGCGCGGGCACGGTGACCAACGTCACCCTGAGGCAGCCGGCCTCGCAGGGCGCCGTGGTGGCCTTGCACGGCCGCTTCGAGATACTCTCCCTGTCTGGCTCCTTTTTGCCGCCTCCTGCGCCGCCGGAAGCCACGGGGCTGACGGTGTACCTGGCAGGCGGGCAGGGGCAGGTTGTGGGAGGCAGCGTTGTTGGCGCGCTCACCGCGGCTGGACCCGTGGTCATCATGGCGGCCTCCTTCGCCAACGCTGTCTACGAGCGACTCCCGTTGGAGGACGAAGATCTGCTCGCGCAAGGGGGGGACAGCGGCGCCGGGATGCTCCCTGGCGCAGGGGGGCAGATGGATCCCAACCTCTTCCAAGGGCTCCCACCCAACCTTCTAGGCAATGTGCAGCTGCCGCCGCCGGAAGCAGCTGCTGGTGGCTATGGATGGAACCCTGGCGCGGCTGGTGGCCGACCGTCGCCCTTCTAATTAATCGGCGCGGCCAGCAGCAGGAGCTTAGAAAAAGTTAAGTGCTTTCATTAGCTTTCTTCACTTCGAGTCGCTTCGTGGGAATTAATTATGCATATCATTTCGGATCTAAGCTTGCTAACTACTACTAGCATGCATTATGTCCGGCCGCGTCGATCTGCAGGATTAATTTGTTTCTGATATGTATCCATCTCTCTGTCATTTGCTTCGGTTATTATGTAGGACTTCTCCTATATGATCTTGTGTCTCATAGTATAACTGATCTTCCTGTTGACTTGAGAGGATTAAATTTGTACCTTATATTCATGTTTCTTAATTTCTCCTATATTCTGCACCGTAATTTTATCCATCC
CDS Sequence
- >BRADI_3g11600v3
ATGGATCCGGTTACGGCATCCATACACGGTCACCATCTTCCTCCACCGTTCAACACCCGCGACTTCCATCACCATCTCCAGCAGCAGCAGCTGCTGCATCTCAAGACCGAGGACGACCAGGGCGGCGGCACTCCAGCTGCTGGGGCCTTGGGCGGCCGCGGCACCAAGCGCGACCACCACGACGACGACGAGAACAGCGGCAACCATGGAGATGGCGGTGGCGGTGAGCTCGCCCTGATCCCCACTTGTGCTAATTCAGGTGGTGGCGGATCAGGCGAGAACGGGTCGCGGCGCCCGAGGGGCCGGCCTGCCGGGTCAAAGAACAAGCCAAAGCCGCCCATCATCATCACGCGGGACAGCGCCAACACGCTCCGCACGCACGTCATGGAGGTTGCCGGCGGGTGCGACATCTCCGAGAGCATCACGGCGTTCGCCCGCCGCAGGCAGCGCGGGGTGTGCGTGCTCAGCGGCGCGGGCACGGTGACCAACGTCACCCTGAGGCAGCCGGCCTCGCAGGGCGCCGTGGTGGCCTTGCACGGCCGCTTCGAGATACTCTCCCTGTCTGGCTCCTTTTTGCCGCCTCCTGCGCCGCCGGAAGCCACGGGGCTGACGGTGTACCTGGCAGGCGGGCAGGGGCAGGTTGTGGGAGGCAGCGTTGTTGGCGCGCTCACCGCGGCTGGACCCGTGGTCATCATGGCGGCCTCCTTCGCCAACGCTGTCTACGAGCGACTCCCGTTGGAGGACGAAGATCTGCTCGCGCAAGGGGGGGACAGCGGCGCCGGGATGCTCCCTGGCGCAGGGGGGCAGATGGATCCCAACCTCTTCCAAGGGCTCCCACCCAACCTTCTAGGCAATGTGCAGCTGCCGCCGCCGGAAGCAGCTGCTGGTGGCTATGGATGGAACCCTGGCGCGGCTGGTGGCCGACCGTCGCCCTTCTAA
Protein Sequence
- >BRADI_3g11600v3
MDPVTASIHGHHLPPPFNTRDFHHHLQQQQLLHLKTEDDQGGGTPAAGALGGRGTKRDHHDDDENSGNHGDGGGGELALIPTCANSGGGGSGENGSRRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITAFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAGGQGQVVGGSVVGALTAAGPVVIMAASFANAVYERLPLEDEDLLAQGGDSGAGMLPGAGGQMDPNLFQGLPPNLLGNVQLPPPEAAAGGYGWNPGAAGGRPSPF