Information report for BRADI_2g18000v3
Gene Details
|
|
Functional Annotation
- Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1 acts upstream of FLC and promotes flowering under long day conditions.
Homologous
- Arabidopsis thaliana — AT5G14530
Gene Resources
- Pfam: PF00400
- UniProt: I1HGZ0
- RefSeq: XP_003567978.1
- EMBL: CM000881
- KEGG: bdi:100820899
- OMA: HNEGYIR
- InterPro: IPR001680 , IPR015943 , IPR019775 , IPR020472 , IPR036322 , IPR037867
- PANTHER: PTHR19861 , PTHR19861:SF9
- SUPFAM: SSF50978
- PROSITE: PS00678 , PS50082 , PS50294
- Gene3D: 2.130.10.10
- OrthoDB: I1HGZ0
- eggNOG: KOG1446
- STRING: 15368.I1HGZ0
- HOGENOM: CLU_044117_0_0_1
Sequences
gDNA Sequence
- >BRADI_2g18000v3
GAGGAAAGAAGAGTCCAGAGGAAGATTTTGGTATACCTGCCAACAGTAGAAATACAAAGAGAATATAACGAGAATATAAATATTACACACGAAATTAAAGGGGGTGCTACAATATATTCGGCATCATTGTTTCCACAGATGGTAATAAAGCAAGTGACACTTCATACATGATATCCTGTAAAGGACAGGACAGGATACAAATCTTTTGTTAAGTTAGCATGTTCTGTGTTCCATCTTTCCTTTCCCTGACCTAATTCGAATTGGATTCATTGGGAATCCAGAAAGTTAGTGCAGTTGACGCAGTCGCAAACATTGCTCGACGAGGGGCCCATTTCAAAGCAGTGATAGGACCAATATGACTGTTCCAGCGAGCAATCTGCAAACGAGATATTAAAATTAAACTAAGACAAATTACAACACACAATATGAGCAACTTTTAAGAAAGAGTACCTCATTTATTGTATTGATGTTCCAGGCATGCAAGGTACCATCACCAGATCCTGAAAAATGATAGCATATATTGCTTTCAACAATAACTTTTGACACACAGCCCGAATCATTGTTTTATGGAAAAACATTATAGGAAAACTGAATTTCCAAGTTTCTGTCTATATTTACATGAGCCTATAAATAGGCTTCATTTTCAGCAGTAGGGCCCCAGACTTGGGAATGGGGAGCATACCACCATATGAAATACACTATCATCCCCTATGGTTTTGAAATTTTTATTGGACACGAAAGGAAGTAGTGTAAGTGCCTCTATCATGCTTAAAAATAGCTACACCGAAGTTGAAGGTGAAGAACATACTGATTACTTGTACGTTACAAAGATGTGGGTATTTTTGTTAGAGTTACTCCCTATTATGATTCAAAATATGTCATAAGAAAGATGGCAGGTAAAAAAAGGATACCTGATATTACATATTGACCATCTGGAGTGAAAGCAGCTTCTGTTGTTATGTTAGGAGAAGGCTCCAAACTGAAGCCACACTTCTGCGAAGTTACAAAGATGAGTTAATACAGATTAGGCAAAGGGTGTGATGCTGTTAACGATAAGATACTTAACCTGTGCACTAGAGTTGACTCACCTTATCCCCTCCATATGCATCCAGAACATATATATGGTTGTTAGTTGTCGTCAAAAGCACAGACTTGCCATCATTGCTGAATTTAATGTCTGATACTTCAGCTGTATCTCCACCAACCAAGAAAGTGTCAAACGGACCCTGAAATTGGTTTTGTTCCACAATATAAGAATTTCCCATGCTTTCTAGAAATACGATTTCCAAATTGAAGCTCAACACGAACCTTGTCATACGACCGAGAATCAAACAGCTTAATTGCGCCTCCCTCCATTGCTACGGCAAAAACAAGTCCCTGTTGATCATATGCAACAGAAGGCCTACCACGCAAACGTAGTATACCCTGATTGCTAAATGTGTAAGCATGGAAAGCAAGCTCAGCTAAATATAAACTAAGCATATTTAATTGCTTCATGATCAATTAACGGAGTCTTGCTGGGAATTAGTGGCCAAACCTGACAAGCATTTACACGAAGATCCCATATTCTGACACTGTGATCAAGTGATCCAGACATAAAGCTATCATTCACAGGAGACATACATAATGAAACAATCCTGAAATGAGATAGATAAAAATGCAACACTTAGCATTTGTCCGTTGAAGTTGTTGCTTGCTACAAACAAGGAGGCAAGGAAATATATCAAACCTGTCTTTGTGTCCTTTGAAATATCTCAAGCAACGGTTGTCATATAGTGACAAATAGCGAAGCGATTCTGCTGACTCTAGATTGTATCTCGAAGAACATAATATAGAACTCGGATGATGAGTAAAACAGACACGATCAGCACCATGTTTCCTGTGATATGTTGTCTTCGACAACCTAAAACAAAATTCCAACTTCTAACATTAGCTATAGACAGATAGATAAGTTACATAAGGTTCTATTAATCAATACCTCAACTACAATAAACAAAGCAAAATTTCAGCAGCATGCAGGTCTTGCGTAAAACCGGTTAAACCTAATCTAACAAGTAAAAATGAACGAGTGGAGTAGGCAATAGGAGACCACAACATGCTGCATCATTGGAGAGCAAATATTACCAGTTCAAACATCACTGACAACATGCTACATCAGGTTACTTGTTGACAGCACCAATAACTAAAGGCATTGTACTTGTCCAGTAAAATCGCCACGAATTTATTGACACAACCAAAAGCATCGCCACAAGATACCATTAAAGATCAAAGTCTGAATTGTACTAGCAAGTTACCGGCATCGCCTACCAGCAGAATTCGACAAAATTCACAAAGCCAACACAAAGCTAGTAGCTAAACTGTCACTCATATATGTATCCCAACAGCGAAAATGCAGTAGAGTAGGCTCTTTCCATCCAGATTCTGCATTTCTGCAATCTCTCTAATGCACCGAGGCTTAAATAGTACAGAATTAAACATAACCGATGCAAAACCAATCAGACTCAGCGAACTCACGTGGCGCTGGTGATGTTGTAGAGGCGTATGGAGTCGTCCTCGCTCGAGGTAACGAGGAGATCCTCCTTGCGGTGGAAATCGAGGCAGTTTATCTTCCCGGCCTGCCCACCGATTCGAGGGTGATATCACAACAGATTAGAGTGGGACAGAAACAGGCAGGTAGGTTAGGGGACTTGGGGGGTCGCGCAACGGAACTCACGTAGTCGGTGAAGACTGCGCCGATGGCCATGCCGCGGACGATGCCGTCGTCCAGCTGCGACAGCGACGTCGCCATCTCCCGCTCGACCGCGCCGCCGCCGCCCGCCTTTCGGAGATCTCCTGTGCAGGGCAACTCTGGTGTAGAAATAAGGCCGCCTGATGGGTCGCTGGTCTGGTCTGAGTGAGACGAAAGACACGAT
CDS Sequence
- >BRADI_2g18000v3
ATGGCGACGTCGCTGTCGCAGCTGGACGACGGCATCGTCCGCGGCATGGCCATCGGCGCAGTCTTCACCGACTACGCCGGGAAGATAAACTGCCTCGATTTCCACCGCAAGGAGGATCTCCTCGTTACCTCGAGCGAGGACGACTCCATACGCCTCTACAACATCACCAGCGCCACGTTGTCGAAGACAACATATCACAGGAAACATGGTGCTGATCGTGTCTGTTTTACTCATCATCCGAGTTCTATATTATGTTCTTCGAGATACAATCTAGAGTCAGCAGAATCGCTTCGCTATTTGTCACTATATGACAACCGTTGCTTGAGATATTTCAAAGGACACAAAGACAGGATTGTTTCATTATGTATGTCTCCTGTGAATGATAGCTTTATGTCTGGATCACTTGATCACAGTGTCAGAATATGGGATCTTCGTGTAAATGCTTGTCAGGGTATACTACGTTTGCGTGGTAGGCCTTCTGTTGCATATGATCAACAGGGACTTGTTTTTGCCGTAGCAATGGAGGGAGGCGCAATTAAGCTGTTTGATTCTCGGTCGTATGACAAGGGTCCGTTTGACACTTTCTTGGTTGGTGGAGATACAGCTGAAGTATCAGACATTAAATTCAGCAATGATGGCAAGTCTGTGCTTTTGACGACAACTAACAACCATATATATGTTCTGGATGCATATGGAGGGGATAAGAAGTGTGGCTTCAGTTTGGAGCCTTCTCCTAACATAACAACAGAAGCTGCTTTCACTCCAGATGGTCAATATGTAATATCAGGATCTGGTGATGGTACCTTGCATGCCTGGAACATCAATACAATAAATGAGATTGCTCGCTGGAACAGTCATATTGGTCCTATCACTGCTTTGAAATGGGCCCCTCGTCGAGCAATGTTTGCGACTGCGTCAACTGCACTAACTTTCTGGATTCCCAATGAATCCAATTCGAATTAG
Protein Sequence
- >BRADI_2g18000v3
MATSLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATLSKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRIVSLCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSVLLTTTNNHIYVLDAYGGDKKCGFSLEPSPNITTEAAFTPDGQYVISGSGDGTLHAWNINTINEIARWNSHIGPITALKWAPRRAMFATASTALTFWIPNESNSN