Information report for Bra025568
Gene Details
Functional Annotation
- HLP1 is a member of the conserved hnRNP A/B family and contains RNA Recognition Motifs (RRM).It binds mRNA and appears to be involved in targeting alternative polyadenylation (APA). APA targets include genes involved in flowering. Loss of HLP1 function results causes late flowering under long and short day conditions. This phenotype is suppressed by loss of FLC.
Homologous
- Actinidia chinensis: CEY00_Acc03772
- Brassica napus: BnaA04G0118400ZS, BnaC04G0405400ZS
- Brassica oleracea: Bo4g140290
- Citrullus lanatus: Cla97C10G196620
- Cucumis sativus: CsGy3G037790
- Glycine max: Glyma.19G061100, Glyma.16G070900, Glyma.05G003400
- Medicago truncatula: Medtr6g004810
- Nicotiana attenuata: A4A49_34905
- Populus trichocarpa: POPTR_001G344900v3
- Solanum lycopersicum: Solyc02g093340.3
- Solanum tuberosum: PGSC0003DMG400012601
- Vitis vinifera: VIT_14s0066g00480
Sequences
gDNA Sequence
- >Bra025568
TGGACCCTTATGCAACGGAAGCAGTCGTGGATGAGGAGAACCACGAAGTGAAACCATCCGAAGATGTTGAGGACGATGACGACAAATCTCAGCCTCAATCCGGTGGTGGCATCGATAGTGCAGGGTAAGTTTTCTCCAAAAGATTCTAGATTCAATAATTAGCGTTCGAATTGAGATAGAGGAGAAGAAATTAGCATCGTATTGTTTTCGATTCTTCTGTTACAAAAATTCGTGATAGGGAAATAGAAAAGTTTGCAACTTTATATGGATACTCTTACTGATTGGTGAAAGCCTAGAGAAATCTGGAGTGGAGAAGGATTACTTATACTTTAGTGAGTTAGTGTACTTATACGATGTTTTTTTGGAATTTGTAGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGGTTAGCTCTTTGTGTCTGGTTGCCACTTTGTTAAGAAGAGGTTAGCTCTCTCGTTATTGGGTTAAAGTTCAATACTTTATTCGGATTCTTTTTTATCTGCTTTTGCAGCTGAGTTCGTCAAGCATTTTGAGAAGTATGGGGAGATTACAGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGGTTTGGGTTTGTTACTTATGCTGATTCCTCTGTGGTCGACAAACTTATTCAGGACAATCACATTATCAACGGGAAGCAGGTTAGTATGGAGCTAACAAGCTTAAGTGTGTGTTCTTAAGTTTTGTCTTACAGTGAAGTAACGTTTGTTTCTTGTTTTTTGGCTCTTCAGGTTGAGATTAAGCGGACGATACCGAGAGGATCCATGAGCTCCTCCAACGAGATCAAAACCAAGAAGATATTTGTTGGTGGTATCCCTTCAACTGTTGATGATGGTAAGAGCCCAGTCTTTTCTTGCTTATTGATTTCTCTCGTATGATTTTCATTTCATGATCATGTCTATCTATGAAGTAACGAATCTGGTGATTGGGGTTTGTGTAGATGAGTTCAAGGAGTTCTTTATGCAATTTGGAGAGCTCAAGGAACACCAGATTATGCGTGATCACGCAACTGGAAGATCACGTGGGTTTGGGTTTGTTACATATGAAAGTGAAGAGATGGTTGATCTCCTCTTGGCAAAAGGGAACAGAATTGAGCTCTCTGGGACTCAGGTAACATAATGTTGCTGAGGTTATAAGGCTTTTGTAGGTGATCAGAACACTCACATCTCCCTCTTACATTGTTGTATGGTCTTATATAGGTAGAGATAAAGAAGGCAGAGCCGAAGAAACCGAACTCGGTAACAACCCCTTCAAGGCGGTTTGGTGACTCACGCTCTAACTTCGGCGGAGGTTATGGAGACGGTTATGGTGGAGGACCCGGCGGTGGATATGGTGGTCCAGATGGTCCTTACAAATCTGGTGGCGGCTATGGAGGTGGCAGGTCTGGTGGCTATGGAGGGTACGGAGGAGAGTTTGGCGGGTATGGCGGCGGTGGATATGGTGGTGGTGTTGGACCATATAGAGGAGGAGAGCCTCCACTTGGGTACTCTGGTCGTTATGGAGGAGGAGGCGGTGGTGGTTACAACAGAGGTGGTTACGGCATGGGAGGTGGAGGAGGAGGAGGAGGGTACGGTGGTGGACCTGGAGATATGTATGGGGGGCCGTACGGTGAGCCAGCAGGTGGTTATGGTGGACCAAGTGGGAGTTATGGAAGTGGATACGGTAGTGGTGGGTATGGTGGAGGAGGCTATAGAGGCAGCAGTGGTGGGTATGACATGGGTGGTACTGGAGTTGGAGGCGGAGGAGGCTACCCTAGTGGTGGCGGCGGAGCAAGCGGAGGAGGCTCGTTCTATGGTGGTGGAGGAGGAGGAGGGGGAAGTAGAGGAGGATATGGAGGAGGTTCAGGACGGTACCATCCTTACGGAAGGTAGAAAGTTCGATAAAGCTTTCAATCTTCTTCTTGTCTTGTTTGTTTCTGTCATGTATGGTTATCAAGAATGATAGCTAGAGAGTAATACTGTATGGTGAGAGAGGAGGCTTATAGGGTTTGATTCCCAGAGATTAGTTTAATACATTTATAGATAATCGCCTGAATATTCTTTTTTTGCTTAGAACACAAGTCTTTGTGGGCAACTAGATTTCGCTTTGTATCATGGCTTTCGAGTTTTGATTCCAACCTTACCAGTTAGACGCTTGTTTGTATTGTTGCATATTTTTATCATGAACCTTCCAAGTCAGTCCGAAGGTTTGATTGTCGTCTACTTCTCCCTAAGTGAGAACCACAAATTGACCAAAAATATCTGCCTCGATTGTTTGATTCAGACGAAACTTAAAAGTTTTTTTTCCACCGGAAATTTCACCAAGGCGATCTCTTTTCATCATTGTTTTGACTGCTGCCCCTCTATCGTTTCCTAATCTCTTTTTATATTTTCTGGGTCTGAGAATCCGACATCTGGAGATGGCAACACTTGCATCGAACATTGTCTGCATCGGAAAAGTAGCGATTTATAGAGCGAATTTCATGGCAAATTCAGCTGCTGTTTATCTTTCTGAACGTTAGGGATTTTGGAAATTGCAGGTAGAGAGGAGGAGGAGGTTGAAGATAGATTGCAGAAAGAAAGAGAAAGGAAGAGATCAAAGCATTTCTCCTTATAAAGTCATTGAAATTACTCCCCCACCTAAGTCTCTCGGCGTTCGTTGCCTTCCTCATGTCAGTCCCAAATCCCTTCATCTTCTTCTTCCTTTCACTTCATTTTCTCGAGAAAATTCCAGAAGAAAACTAAACACCCTTGATCAACATTCTTTGAATTTCTTCGTCAAATTGATGTGGTTTCATCTAGCTGATTTTGATGGGAAAAAAGGCTGTGATTTTTGCAGAATCTTCAGTGCGGTGAGAACGTGATGATCGAAGGTCAAACGTACACAATCTCCGCCGTGACTCATCGGTATCAGCTGCGCAAAGGTAAGTACGAGCCTAGTGAGAGGCGGCTTGATGTTCTCTCCGCCGCTAGATATGTCTTAAACCTTTATTTCGACAATCTGCTCCAAAATTCTTGA
CDS Sequence
- >Bra025568
ATGGACCCTTATGCAACGGAAGCAGTCGTGGATGAGGAGAACCACGAAGTGAAACCATCCGAAGATGTTGAGGACGATGACGACAAATCTCAGCCTCAATCCGGTGGTGGCATCGATAGTGCAGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAGTTCGTCAAGCATTTTGAGAAGTATGGGGAGATTACAGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGGTTTGGGTTTGTTACTTATGCTGATTCCTCTGTGGTCGACAAACTTATTCAGGACAATCACATTATCAACGGGAAGCAGGTTGAGATTAAGCGGACGATACCGAGAGGATCCATGAGCTCCTCCAACGAGATCAAAACCAAGAAGATATTTGTTGGTGGTATCCCTTCAACTGTTGATGATGATGAGTTCAAGGAGTTCTTTATGCAATTTGGAGAGCTCAAGGAACACCAGATTATGCGTGATCACGCAACTGGAAGATCACGTGGGTTTGGGTTTGTTACATATGAAAGTGAAGAGATGGTTGATCTCCTCTTGGCAAAAGGGAACAGAATTGAGCTCTCTGGGACTCAGGTAGAGATAAAGAAGGCAGAGCCGAAGAAACCGAACTCGGTAACAACCCCTTCAAGGCGGTTTGGTGACTCACGCTCTAACTTCGGCGGAGGTTATGGAGACGGTTATGGTGGAGGACCCGGCGGTGGATATGGTGGTCCAGATGGTCCTTACAAATCTGGTGGCGGCTATGGAGGTGGCAGGTCTGGTGGCTATGGAGGGTACGGAGGAGAGTTTGGCGGGTATGGCGGCGGTGGATATGGTGGTGGTGTTGGACCATATAGAGGAGGAGAGCCTCCACTTGGGTACTCTGGTCGTTATGGAGGAGGAGGCGGTGGTGGTTACAACAGAGGTGGTTACGGCATGGGAGGTGGAGGAGGAGGAGGAGGGTACGGTGGTGGACCTGGAGATATGTATGGGGGGCCGTACGGTGAGCCAGCAGGTGGTTATGGTGGACCAAGTGGGAGTTATGGAAGTGGATACGGTAGTGGTGGGTATGGTGGAGGAGGCTATAGAGGCAGCAGTGGTGGGTATGACATGGGTGGTACTGGAGTTGGAGGCGGAGGAGGCTACCCTAGTGGTGGCGGCGGAGCAAGCGGAGGAGGCTCGTTCTATGGTGGTGGAGGAGGAGGAGGGGGAAGTAGAGGAGGATATGGAGGAGGTTCAGGACGGTACCATCCTTACGGAAGAATCCGACATCTGGAGATGGCAACACTTGCATCGAACATTGTCTGCATCGGAAAAGTAGAGAGGAGGAGGAGGTTGAAGATAGATTGCAGAAAGAAAGAGAAAGGAAGAGATCAAAGCATTTCTCCTTATAAAGTCATTGAAATTACTCCCCCACCTAAGTCTCTCGGCGTTCGTTGCCTTCCTCATAATCTTCAGTGCGGTGAGAACGTGATGATCGAAGGTCAAACGTACACAATCTCCGCCGTGACTCATCGGTATCAGCTGCGCAAAGGTAAGTACGAGCCTAGTGAGAGGCGGCTTGATGTTCTCTCCGCCGCTAGATATGTCTTAAACCTTTATTTCGACAATCTGCTCCAAAATTCTTGA
Protein Sequence
- >Bra025568
MDPYATEAVVDEENHEVKPSEDVEDDDDKSQPQSGGGIDSAGKIFVGGLARETTSAEFVKHFEKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKLIQDNHIINGKQVEIKRTIPRGSMSSSNEIKTKKIFVGGIPSTVDDDEFKEFFMQFGELKEHQIMRDHATGRSRGFGFVTYESEEMVDLLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSRRFGDSRSNFGGGYGDGYGGGPGGGYGGPDGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGGEPPLGYSGRYGGGGGGGYNRGGYGMGGGGGGGGYGGGPGDMYGGPYGEPAGGYGGPSGSYGSGYGSGGYGGGGYRGSSGGYDMGGTGVGGGGGYPSGGGGASGGGSFYGGGGGGGGSRGGYGGGSGRYHPYGRIRHLEMATLASNIVCIGKVERRRRLKIDCRKKEKGRDQSISPYKVIEITPPPKSLGVRCLPHNLQCGENVMIEGQTYTISAVTHRYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS