Information report for Bra019221
Gene Details
Functional Annotation
- Encodes a MADS-box protein involved in flowering. Regulates the expression of SOC1 and is also upregulated by SOC1. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain.
Homologous
- Brassica napus: GSBRNA2T00048970001, GSBRNA2T00154448001, BnaC07G0458500ZS, GSBRNA2T00116099001, BnaC01G0180300ZS
- Brassica oleracea: Bo7g109590, XP_013593895.1, XP_013593894.1, XP_013583417.1, Bo1g039080, XP_013583411.1
- Raphanus raphanistrum: RrC4106_p1, RrC302_p8
Gene Resources
- Pfam: PF01486 PF00319
- UniProt: A0A078FDP1
- EMBL: LK032008
- AlphaFoldDB: A0A078FDP1
- OMA: QMWLAIV
- InterPro: IPR002100 , IPR002487 , IPR033896 , IPR036879 , IPR050142
- PANTHER: PTHR48019
- SUPFAM: SSF55455
- PROSITE: PS00350 , PS50066 , PS51297
- Gene3D: 3.40.1810.10
- SMR: A0A078FDP1
- CDD: cd00265
- STRING: 3708.A0A078FDP1
Sequences
gDNA Sequence
- >Bra019221
TACCCAAGTTTAAGAGAAGTGTCGGAGAAGTCATCTTCAAGGGGAGCTCCACTGTCATAGCTTGACACATTCGTGGTCGCCGACTCTGTCTCCACAGCCTCCTTTAACGCCATCGTTTTAGCCATTTCCATCGTCACTACCTAATATTATATCAAAATCAAGATTTACCTTATTAGTATTACTTATAAAAATATTGAATGATCTCTACAATAGGTATAGAGCCATACTCTCTCCCTCAGTCTCCTATTCTCATCCACCAATTCCGATCCCTGCGAGTATTTACTCCAGTTATATTAATATGTGGTATACTTAATATATATAGGCTTGGTTAATCATCATATCATTTGATAATATGAATTGTACGTACTAACCCGTTTCTCAAGTGAAGAAATCTGGCTCATCAAAAACTCTCCCTAGTTAACAACAACAAACAATGTCACCTTTTTATATATGTGCTACATTAAGAAAACATGTATGATATTAGTCTATATCTAGTAATCAACCTTTTTCTCAGACACACGGCTGAGTCCGGATTCGAGCATTTTCTCCAACCGCTGCAACTCTTCTAGGTTCAATCCTTCAAGATCCTCTCCTCTCAGTTTTCTGTTTTACGTTAGAATACAACATATCTAGTAATCATTTGTCTTTATAAATTCAGTTTCAGGAGACGACTAAGACCCCACATCGCACACAATATGCATATATACGCTAATAATAATGTGGATTCTTAAAAAGAACCACCCATCGTCGGATAAGAAGATAACAAACTAATGTCTTATAATATCGAAGAACGCCTAAACTATTACCGTAGCTTTTGTGATGATCTCGATCCAAAGATCTTTGTAGAGTTGGTTGGACTCATTCAAAAAATTACCCAACCAGATATCGGCTCGTAATGTTATCAAACAAAAGTTCTATCCACCTATACTAGAAGTTGTTAGCTACAAATATTTTAATAAATATGAGAATAATGAGTCATATTTGCAAGCTATTAAACTTTTCTGAACTCAAGAAATCATTCTTAAAATCTATTTATAAAAGCTTCGACGAATCTACACATGGAATGAAATTATGACTTCGTTTTTAGATGAAATAGATTCTAATATGTAACATAAAAATCATTCTCAAACATAAAAACCACACATGCAAAGTCGCAAACATATAAATGATGCCATACCTTAGCTGCTTGGTTTTGTCTTCGACTTCCTGACTTAGTCGGGAGAGGTTACAATTCTCAACCTGCTAGATGCAAAATCAACATTTTTAGGTTCTGTTACTGATATGTGAAACCAAGTAATTAAATGCTTCGAGATTAATGATGACAATTATGATATGCCATTCTATACCGCTAAATCTGGACTTACACCAAACAATTCAAAGAAACCCGCATAACAAGTGAATACTGGAGAAAGAGAGAATGATTTGATGAAAGAAAAAGAGTGAATGATAGTGAGAATACCTGGTTATATGGAGAAGGCTGGCCCATCACTTTGTTGATGTTACTTGCATGAAGATTATACCTTCCCAATATATCTTTCATCCTACACGTTTCAACAAACAATCCATCTTTCATATTAACATTTACATTGTCCAAATATGCAATTTGCGAAATTAGTTAATTAAAGAATACACTAGAAGCACGTCTCTAGTCCCCATAAAGAAAAGGAAATCAAAAGTAGACATCACGTCATAACATGTGCAGAAGATATTTATTAGATGACTACATTCTCAGAGATGTATTTTTTTTTTTTTTTAGAACGACGAATATTTTAATAAAAAGCCGAAACAGAGTTCAAGCCCGTGGGCTAAAGTTACATTCTCAGAGATGTATATATGCTTCTGCTTCTCACAAAAAAATAAACGAGCGGTTAAGACTCAATCCCCAATCATACCAAGTGGACATTGTTAAAAGACTTTTGTAATACATAAAATAATGAGAAAAATCCATTCTAATTGTGGTAAGTACCATGTATCCATATATGCACATGCTTGCATAGGTTAGCACAATCACACTATCATATTCTACTTTCCCCTTCCTGATTATACAAAGTTAGCCATAAGTCTAAATGAAAAAAACTAATAAAACGTAAATAGCACATACTTATAATTCATAATTTGTATATTTTTATTAGGAAAAAGGGATGAGAGCAAGTACAATAAGAGTACAATAATTTAAGTTGTCAGAATCTTTATTTTTCTTACTTCAGTATATCATCTAATTATGCGGTGACACGAGTTGATTACGTACATGATATCTCCAAGCCCGAGAATAATTTAATTTATAAAGTAAAAAATAACCAAATATCTGATATAATTACGTATCTTAACATAATAGCATCCCTCCAACAATTTTGATCTCTATAACACAAAAAAAAATTGAAAAAATAAAATAAGAGAAGAAGATCTATAACATGAAAGTAGAGATACCTTGAGCTAGAGAACTCGAAGAGCTTGCCGGTGGCAGAGAAGATGATGAGAGCAACATCGGCATCACAAAGAACCGAAAGTTCATCAGCTTTCTTGAAGATTCCTCTTCTTCTCTTAGAGAAGGTAACTTGTCTCGCTGTTATGTTATCTATCTTCTTTATCCTTCTCTTTTCTCTCGCCAT
CDS Sequence
- >Bra019221
ATGGCGAGAGAAAAGAGAAGGATAAAGAAGATAGATAACATAACAGCGAGACAAGTTACCTTCTCTAAGAGAAGAAGAGGAATCTTCAAGAAAGCTGATGAACTTTCGGTTCTTTGTGATGCCGATGTTGCTCTCATCATCTTCTCTGCCACCGGCAAGCTCTTCGAGTTCTCTAGCTCAAGGATGAAAGATATATTGGGAAGGTATAATCTTCATGCAAGTAACATCAACAAAGTGATGGGCCAGCCTTCTCCATATAACCAGGTTGAGAATTGTAACCTCTCCCGACTAAGTCAGGAAGTCGAAGACAAAACCAAGCAGCTAAGAAAACTGAGAGGAGAGGATCTTGAAGGATTGAACCTAGAAGAGTTGCAGCGGTTGGAGAAAATGCTCGAATCCGGACTCAGCCGTGTGTCTGAGAAAAAGGGAGAGTTTTTGATGAGCCAGATTTCTTCACTTGAGAAACGGGGATCGGAATTGGTGGATGAGAATAGGAGACTGAGGGAGAGAGTAGTGACGATGGAAATGGCTAAAACGATGGCGTTAAAGGAGGCTGTGGAGACAGAGTCGGCGACCACGAATGTGTCAAGCTATGACAGTGGAGCTCCCCTTGAAGATGACTTCTCCGACACTTCTCTTAAACTTGGGTAA
Protein Sequence
- >Bra019221
MAREKRRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSSRMKDILGRYNLHASNINKVMGQPSPYNQVENCNLSRLSQEVEDKTKQLRKLRGEDLEGLNLEELQRLEKMLESGLSRVSEKKGEFLMSQISSLEKRGSELVDENRRLRERVVTMEMAKTMALKEAVETESATTNVSSYDSGAPLEDDFSDTSLKLG