Information report for Bra006242
Gene Details
Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Arabidopsis thaliana — AT5G14170
Gene Resources
- Pfam: PF02201
Sequences
gDNA Sequence
- >Bra006242
TAGTTCCCCCTTGCTGGCCTCCGGTTCAAGTAACGTATCACTGCATCTTCGACCCTGCAACATTTCATAATTCAGAAACGTAACAACAATGAACTCTAGTACACATATAACTCAAGTGAATTTAAGATCCTAGAAACCAGAGTGAGCAATGAGCTTACCAAGGTTGGTTGAAAAAGTCTGATCCACGCTCTCTCTCAGCATTTCGACTAGCTTCTCCCGCTACAACCTTCAGATCCTTGCTCTGCGATTCCATCAGCGCGTTTACGAATTCAGCTGGTGATTGGCTGAACCCCAAGAAAAATGCTCGTCTCCTCCTATGCTCATGGATCTTCCTTATGGCTGCACATATCGCCTCATCACAAGCCTCAATCTCTTTATTCTTCTCTGCGTTGGCCAACAAGTTGCTCAGATCCCTTTGGATAGTGACAGGTACATCCACTAGGACATCGTAACACGCTGATACGGCCGGGCTACTTCCCGACAGCTTGATCTTGTGTTCTAAGTGAATCGGTGGTGGAGGTGACAAGTGATGAGATAACTTCTGAGAGACCATTGTGAACTTCAACTTCTGTTCCCCAAACACTTTCTGAAGCGCAGCGTCACAGTTGAAGAAAGAAGGGTCGTTTGGGCTCTGCAGTTTCCTCGCCTTGACGTAGTGCCAAATTGCAGCGATGATTCTTGGCCTGGTTTCAACCTCAATCCCAAGAACATCCATCAACGCAGTAGAGAGCTTGAACTTCTCAGGGACGTAGTTCATCTCCAAACGAATAGTAGCTGCAAACTCCTGATTCCCTTTCCTCTTTATCTCAAACCCTTCCTGAGGAGCAGGTGAACGAGAGTTCTCCCATGTGATCAACGGGTTCTCAGGGTACAGCCTCTGATCAAGGCTAACTTGAACCTTCTTGAAGAAAGACGAGAACTTGGGATGCAATGGGTTAGTAGTCTCCGGATCCACCCCATCTTCCAGGATCCTACCAACAATCTTAAGAGTCCATGTTGCAGGGTCAGCGTTTGGATTATTGTTTTGGTTAGCAAACGTGTTGAACACATAGATCCTAAGCGTCTTCTGTACGCAAGGAGGGTTCTTGAGAGCTTCCTGGATGTCAACCTTCTTTCTACTCAACGCAGCATCAACACGAGACTCAAACTCAAGAAGCTGCGTGTATAACTCAGACTCAGGCAAGATCGCCGCCACACGTTCCTGCAAGGACTTTTCAGGAAGCTTCTGTTTCTTCTTCCGTGCGGCAGGGGTCAACTCCATTGTTCTCATGGGGGAGACAGTGTTGTTAGGGAAACCAGAAGGAGGTCTCATTAACCTCTTCACGTTTGAACTACTTCCAGGAGTGGTCATAGAAGGTGAAGAAGACTGACCCAAACCACCAATCTCCTGGGGGGCTTGAGCTTGGTTTATCCCCATGCCTGCTTGCATCTGTGCATGAACTTTAGACTGTGCTTGAGCCATGGCCTGAGCTTGAGTGAACTGAAACGGAGCTTGGAAGTTAGTTGCTATATGAGACTGAGCAAAGCCTCCAGGGACAGACGCAGAGGGCATCATCCCAGGGCTCCTGAACGGCGAAGGCGCAGAGCCTTGAGGATTATTGTTGTTACCAGACAT
CDS Sequence
- >Bra006242
ATGTCTGGTAACAACAATAATCCTCAAGGCTCTGCGCCTTCGCCGTTCAGGAGCCCTGGGATGATGCCCTCTGCGTCTGTCCCTGGAGGCTTTGCTCAGTCTCATATAGCAACTAACTTCCAAGCTCCGTTTCAGTTCACTCAAGCTCAGGCCATGGCTCAAGCACAGTCTAAAGTTCATGCACAGATGCAAGCAGGCATGGGGATAAACCAAGCTCAAGCCCCCCAGGAGATTGGTGGTTTGGGTCAGTCTTCTTCACCTTCTATGACCACTCCTGGAAGTAGTTCAAACGTGAAGAGGTTAATGAGACCTCCTTCTGGTTTCCCTAACAACACTGTCTCCCCCATGAGAACAATGGAGTTGACCCCTGCCGCACGGAAGAAGAAACAGAAGCTTCCTGAAAAGTCCTTGCAGGAACGTGTGGCGGCGATCTTGCCTGAGTCTGAGTTATACACGCAGCTTCTTGAGTTTGAGTCTCGTGTTGATGCTGCGTTGAGTAGAAAGAAGGTTGACATCCAGGAAGCTCTCAAGAACCCTCCTTGCGTACAGAAGACGCTTAGGATCTATGTGTTCAACACGTTTGCTAACCAAAACAATAATCCAAACGCTGACCCTGCAACATGGACTCTTAAGATTGTTGGTAGGATCCTGGAAGATGGGGTGGATCCGGAGACTACTAACCCATTGCATCCCAAGTTCTCGTCTTTCTTCAAGAAGGTTCAAGTTAGCCTTGATCAGAGGCTGTACCCTGAGAACCCGTTGATCACATGGGAGAACTCTCGTTCACCTGCTCCTCAGGAAGGGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTACTATTCGTTTGGAGATGAACTACGTCCCTGAGAAGTTCAAGCTCTCTACTGCGTTGATGGATGTTCTTGGGATTGAGGTTGAAACCAGGCCAAGAATCATCGCTGCAATTTGGCACTACGTCAAGGCGAGGAAACTGCAGAGCCCAAACGACCCTTCTTTCTTCAACTGTGACGCTGCGCTTCAGAAAGTGTTTGGGGAACAGAAGTTGAAGTTCACAATGGTCTCTCAGAAGTTATCTCATCACTTGTCACCTCCACCACCGATTCACTTAGAACACAAGATCAAGCTGTCGGGAAGTAGCCCGGCCGTATCAGCGTGTTACGATGTCCTAGTGGATGTACCTGTCACTATCCAAAGGGATCTGAGCAACTTGTTGGCCAACGCAGAGAAGAATAAAGAGATTGAGGCTTGTGATGAGGCGATATGTGCAGCCATAAGGAAGATCCATGAGCATAGGAGGAGACGAGCATTTTTCTTGGGGTTCAGCCAATCACCAGCTGAATTCGTAAACGCGCTGATGGAATCGCAGAGCAAGGATCTGAAGGTTGTAGCGGGAGAAGCTAGTCGAAATGCTGAGAGAGAGCGTGGATCAGACTTTTTCAACCAACCTTGGGTCGAAGATGCAGTGATACGTTACTTGAACCGGAGGCCAGCAAGGGGGAACTAG
Protein Sequence
- >Bra006242
MSGNNNNPQGSAPSPFRSPGMMPSASVPGGFAQSHIATNFQAPFQFTQAQAMAQAQSKVHAQMQAGMGINQAQAPQEIGGLGQSSSPSMTTPGSSSNVKRLMRPPSGFPNNTVSPMRTMELTPAARKKKQKLPEKSLQERVAAILPESELYTQLLEFESRVDAALSRKKVDIQEALKNPPCVQKTLRIYVFNTFANQNNNPNADPATWTLKIVGRILEDGVDPETTNPLHPKFSSFFKKVQVSLDQRLYPENPLITWENSRSPAPQEGFEIKRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQSPNDPSFFNCDAALQKVFGEQKLKFTMVSQKLSHHLSPPPPIHLEHKIKLSGSSPAVSACYDVLVDVPVTIQRDLSNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPAEFVNALMESQSKDLKVVAGEASRNAERERGSDFFNQPWVEDAVIRYLNRRPARGN