Information report for Bo9g166100
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Brassica napus: BnaC09G0520200ZS, BnaA10G0216600ZS, BnaA03G0057600ZS
- Brassica rapa: Bra006242
- Citrullus lanatus: Cla97C05G095010
- Cucumis melo: MELO3C014878
- Cucumis sativus: CsGy3G024010
- Gossypium hirsutum: Gohir.D07G234900, Gohir.A10G159100, Gohir.A07G227800
- Populus trichocarpa: POPTR_001G331400v3
- Prunus avium: Pav_sc0001080.1_g1100.1.mk
- Prunus persica: PRUPE_3G305400
- Vitis vinifera: VIT_14s0068g02140
Gene Resources
- Pfam: PF02201
- UniProt: A0A0D3EFL1
- RefSeq: XP_013612907.1
- AlphaFoldDB: A0A0D3EFL1
- KEGG: boe:106319196
- OMA: NFRCNEP
- InterPro: IPR003121 , IPR019835 , IPR036885
- PANTHER: PTHR13844
- SUPFAM: SSF47592
- PROSITE: PS51925
- Gene3D: 1.10.245.10
- OrthoDB: A0A0D3EFL1
- CDD: cd10568
- eggNOG: KOG2570
- STRING: 109376.A0A0D3EFL1
- HOGENOM: CLU_023529_1_0_1
Sequences
gDNA Sequence
- >Bo9g166100
TGTCTGCTAACAACAACAATCCACAGAAGCCTCAACAAGGCTCTGCGCCTTCACCATTCGGCGTAAACCCTGGGATGGCCTCTGCATCTGTCCCCGGAAACCAAGGCTTTACTCAGTCTCACATGGCACCTAACTTTCCAGCTCAGTTTCAATTCTCACAAGCCCAGGCCATGGCCCATGCTCAAGCCCAAGCCCAGTCTAAAGCCCAAGCACAGTTCCAAGCTCAGATGCAAGCAGGGATGACGATGAACCAAGGGCAAGGCTCCCAGGGGATTGGTGGTGTGTTGGGTTCATCTTCTCCTTCCATGACTCCTGGTAGCTTGAACATGAAGAGGTTCCAGCAGAGGCCGCCGATGCGGCCTCCTTCTGGTTTCCCCGCGAGTAACAACACTGTCTCCCCCATGAGAACGATGGAGTTAACTCCCGCGGCGAGGAAGAAGAAAATGAAGCTTCCTGAGAAGTCGTTGCAGGAGAGGGTGGCAGCAATCTTGCCTGAGTCTGCGTTGTACACGCAGCTTCTTGAGTTTGAGTCAAGGGTTGATGCTGCTTTGAGTAGAAAGAAAGTTGACATCCAGGAGGCTCTTAAGAACCCTCCTTGCACTCAGAAGACGCTTAGGATCTATGTGTTCAACTCGTTTGCGAACCAAAACAACACCATCCCTGGGAATCCAAATGCCGACCCGCCGACATGGACTCTTAAGATTGTTGGTAGGATCCTGGAAGATGGGGTGGATCCGGACCAGCCAGGTTTTGTTCAGCAAGCGAACCCATCGCATCCAAAATTCTCATCTTTCTTCAAGAAGGTAATAGTTAACCTGGACCAGAGGCTGTATCCTGAGAACTCGGCGATCACATGGGAGAGTGCTAGATCACCTGCTCCCCAGGAAGGGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTACTATTCGGTTGGAGATGAACTACGTCCCTGAGAAGTTCAAGCTCTCTACTGCATTGATGGATGTTCTCGGGATTGAGGTTGAGACAAGACCAAGAATCATCTCTGCGATATGGCATTACGTTAAGGCGAGGAAGCTACAGAACCCAAATGATCCTTCTTTCTTCAACTGCGACGCTGCACTTCACAAAGTGTTTGGGGAAGAGAAGGTGAAGTTCACAATGGTTTCTCAGAAGATATCTCATCACTTGTCGCCTCCACCGCCGATTCACTTGGAACACAAGATCAAGCTGTCGGGAAACAACCCGGCTATATCGGCATGTTACGATGTCCTGGTGGATGTACCGTTTCCGATTCAGAGGGATCTGAACAACCTGTTGGCCAACGCGGAGAAGAATAAAGAGATTGAGGCTTGTGATGAAGCTATATGTGCTGCCATAAGGAAAATCCATGAGCATAGGAGGAGACGTGCGTTTTTCTTGGGATTCAGCCAGTCGCCAGTTGAGTTCATAAACGCACTGATCGAATCTCAGAGCAAGGATCTGAAGGTGGTAGCGGGAGAAGCTAGTCGAAATGCTGAGAAAGAACGTCGAGCAGACTTCTTCAACCAACCTTGGTAAGCTCATTATCTATGTTTTCTCTGTTTTTGTCTGATAACTTCACTCGCTACTAGAGTTGTGAAAGTGTAGGAACTTCACTGATTGATTGATGATATGTTTATGAATCATGAAATGTTGCAGGGTTGAAGATGCAGTTATACGTTACTTGAACCGGAAGCCAGCAGCTGGGAACGAAGGACCAGGGACCTGGTGA
CDS Sequence
- >Bo9g166100
ATGTCTGCTAACAACAACAATCCACAGAAGCCTCAACAAGGCTCTGCGCCTTCACCATTCGGCGTAAACCCTGGGATGGCCTCTGCATCTGTCCCCGGAAACCAAGGCTTTACTCAGTCTCACATGGCACCTAACTTTCCAGCTCAGTTTCAATTCTCACAAGCCCAGGCCATGGCCCATGCTCAAGCCCAAGCCCAGTCTAAAGCCCAAGCACAGTTCCAAGCTCAGATGCAAGCAGGGATGACGATGAACCAAGGGCAAGGCTCCCAGGGGATTGGTGGTGTGTTGGGTTCATCTTCTCCTTCCATGACTCCTGGTAGCTTGAACATGAAGAGGTTCCAGCAGAGGCCGCCGATGCGGCCTCCTTCTGGTTTCCCCGCGAGTAACAACACTGTCTCCCCCATGAGAACGATGGAGTTAACTCCCGCGGCGAGGAAGAAGAAAATGAAGCTTCCTGAGAAGTCGTTGCAGGAGAGGGTGGCAGCAATCTTGCCTGAGTCTGCGTTGTACACGCAGCTTCTTGAGTTTGAGTCAAGGGTTGATGCTGCTTTGAGTAGAAAGAAAGTTGACATCCAGGAGGCTCTTAAGAACCCTCCTTGCACTCAGAAGACGCTTAGGATCTATGTGTTCAACTCGTTTGCGAACCAAAACAACACCATCCCTGGGAATCCAAATGCCGACCCGCCGACATGGACTCTTAAGATTGTTGGTAGGATCCTGGAAGATGGGGTGGATCCGGACCAGCCAGGTTTTGTTCAGCAAGCGAACCCATCGCATCCAAAATTCTCATCTTTCTTCAAGAAGGTAATAGTTAACCTGGACCAGAGGCTGTATCCTGAGAACTCGGCGATCACATGGGAGAGTGCTAGATCACCTGCTCCCCAGGAAGGGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTACTATTCGGTTGGAGATGAACTACGTCCCTGAGAAGTTCAAGCTCTCTACTGCATTGATGGATGTTCTCGGGATTGAGGTTGAGACAAGACCAAGAATCATCTCTGCGATATGGCATTACGTTAAGGCGAGGAAGCTACAGAACCCAAATGATCCTTCTTTCTTCAACTGCGACGCTGCACTTCACAAAGTGTTTGGGGAAGAGAAGGTGAAGTTCACAATGGTTTCTCAGAAGATATCTCATCACTTGTCGCCTCCACCGCCGATTCACTTGGAACACAAGATCAAGCTGTCGGGAAACAACCCGGCTATATCGGCATGTTACGATGTCCTGGTGGATGTACCGTTTCCGATTCAGAGGGATCTGAACAACCTGTTGGCCAACGCGGAGAAGAATAAAGAGATTGAGGCTTGTGATGAAGCTATATGTGCTGCCATAAGGAAAATCCATGAGCATAGGAGGAGACGTGCGTTTTTCTTGGGATTCAGCCAGTCGCCAGTTGAGTTCATAAACGCACTGATCGAATCTCAGAGCAAGGATCTGAAGGTGGTAGCGGGAGAAGCTAGTCGAAATGCTGAGAAAGAACGTCGAGCAGACTTCTTCAACCAACCTTGGGTTGAAGATGCAGTTATACGTTACTTGAACCGGAAGCCAGCAGCTGGGAACGAAGGACCAGGGACCTGGTGA
Protein Sequence
- >Bo9g166100
MSANNNNPQKPQQGSAPSPFGVNPGMASASVPGNQGFTQSHMAPNFPAQFQFSQAQAMAHAQAQAQSKAQAQFQAQMQAGMTMNQGQGSQGIGGVLGSSSPSMTPGSLNMKRFQQRPPMRPPSGFPASNNTVSPMRTMELTPAARKKKMKLPEKSLQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCTQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIVGRILEDGVDPDQPGFVQQANPSHPKFSSFFKKVIVNLDQRLYPENSAITWESARSPAPQEGFEIKRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIISAIWHYVKARKLQNPNDPSFFNCDAALHKVFGEEKVKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAISACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAEKERRADFFNQPWVEDAVIRYLNRKPAAGNEGPGTW