Information report for Bo7g008400
Gene Details
|
|
Functional Annotation
- encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins.
Homologous
- Brassica napus: BnaC07G0032700ZS, BnaA07G0015400ZS, BnaA07G0015500ZS, BnaC07G0032800ZS, BnaC07G0033600ZS, BnaA07G0015600ZS
- Brassica rapa: Bra038832, Bra038831, Bra038830
- Citrullus lanatus: Cla97C11G217990
- Glycine max: Glyma.09G056100, Glyma.17G062000
- Gossypium hirsutum: Gohir.A05G004200, Gohir.D05G004600
- Juglans regia: Jr11_25440
- Populus trichocarpa: POPTR_018G090800v3
Gene Resources
- Pfam: PF12937 PF07646 PF13426
- UniProt: A0A3P6EII9
- EMBL: LR031876
- AlphaFoldDB: A0A3P6EII9
- InterPro: IPR000014 , IPR001810 , IPR011498 , IPR015915 , IPR035965 , IPR036047
- PANTHER: PTHR46175 , PTHR46175:SF10
- SUPFAM: SSF117281 , SSF55785 , SSF81383
- PROSITE: PS50112 , PS50181
- Gene3D: 1.20.1280.50 , 2.120.10.80 , 3.30.450.20
- SMR: A0A3P6EII9
- CDD: cd00130 , cd22154
Sequences
gDNA Sequence
- >Bo7g008400
TGTCCTGTATGAAAAATCAGATGGAGTGGGATAGCGATTTCGATCTCAGCGGCGGAGATAACGGACCGATTCCGTTTCCGTTGAGTAGTCAACCTAAAACGGCGACGTTTGGGTTCGTGGTCAGCGACGCTCTTGACCCTAACCACCCTATCATTTACGTCAACACCGTCTTCGAGATTATCACTGGCTATCGCGCTGACGAAGTTATTGGTAAAAACTGGTGAGCTTTCCTTCTCTTTTGCCCTTGTGTGTTACCAGACAGAGCTTTGTTCTGTCTGATTTTTTTTTTTTTTTTGAAAAGTTTGTCTGAACTCCAACTACATAGGTTGTGTGTTCTGTCTTTTAGGGAAGACTTTGTCTTTTTGATGTTTTAATTTTTTATGCGTTACTGAACTATTAATATTTTCTTTTAACCATGTCATAATAATGTGTTATACTATACAATCAATGCGTTGTGGTCTTAGTATGTTTGAATTCAATGTTTGTTTTGTCTGAATTTTTTTAGAGTTTTGTCTGAATTAATGTTTAGGAACGCCAGCTATATAGTTTGTGTCTCTTTGTGCTGTTTTCTTTTTTATGCGTTACTGAACTTCTAATATCATTTTGACATGATAATGTGTTATATAATCAAATGCGTATTGGTCTTAGTATGTTGTAATTCATGTCTATATATGCGTAATCTTTGTTCGTTGCATCTGAGTTTTGTTTCTTGTTTTGTGGCAGCCGGTTCTTGCAGTGTAGAGGTCCATATGCTAAAAGGCGACACCCCTCAGTAGATTCCACAGTTGTCTCCAAGATGCGAAGATGTCTAGAAAAAGGCATTGAGTTTCAAGGGGAGTTACTCAACTTTCGCAAAGATGGCTCTCCTTTGATGAACAAGCTGCGCCTAGTCCCTATCCGTGAAGACGACGAGATCACTCACATCATAGGTGTTCTCTTCTTCACAGACGCAAAACTCGCACCGTCTCCTGCAAAAGAGATCACAAGAAAGCGAGATCCCTCCTTCACCTCTGCTTCACCGGTTGGAGAGCGTAACGTCTCTCGTGGGCTGTGTGGGATATTCGAGCTGAGCGATGAGGTCATGGCTTACAGGATCTTGTCTCGGTTGACTCCGCGTGATATCGCGTCTGTTGGTTGCGTGTGTCGGCGGTTTAATGAGTTGACGAAGAACGATGATGTGTGGAGAATGGTCTGCCAAAACACGTGGGGGAGTGAAGCTACACGTGTTCTTGAGACTGCTCCCGGTGCGAAGAGGATCGGTTGGGTGAGACTAGCTCGAGAGTTTACCACACACGAAGCAACTGCTTGGAGGAAGTTCTCCGTTGGAGGTATTGTTCAGCCTTCTCGGTGTAACTTCAGCACTTGTGCTGTTGGGAACAAGATCGTTATCTTCGGCGGCGAAGGTGTGAACATGCAACCGATGAATGATACGTTCGTGTTGGACCTTGGCTCCACTAGTCCTGAGTGGAAATCTGTTCTGGTTAGCTCTCCTCCTCCTGGTCGCTGGGGTCATACGCTCTCTTGTGTCAACGGCTCTCGTTTAGTAGTCTTTGGAGGTTACGGGAGCCATGGGTTACTCAACGATGTCTTCTTGCTAGACCTTGATGCAGACCCTCCTACATGGAGAGAAGTATCCGGTTTAGCTCCTCCAATACCAAGATCATGGCATAGCTCGTGTACGCTCGATGGAACTAAGCTTATTGTTTCTGGTGGCTGTGCTGATTCAGGAGCTTTGCTCAACGATACGTTCTTGCTTGACTTGTCTATGGATATACCGACGTGGAGGGAGATAAGAGTTCCATGGTCTCCTCCATCTCGCCTCGGACATACCTTAACAGTCTACGGTGACAGGAAGATCCTTATGTTTGGTGGTCTTGCGGAGTATGGTTCGAGGAGGTTCCGGTCTAATGATGCGTACACGATGAATCTTAGTGAGAATGAGCCGTGCTGGAGACCCTTGGTTGGGTATGGAACTAGCCTTCCTGGAGGCGTGGCAGCTCCGAGGCTGGATCATGTGGCGATTAGTCTTCCGGGTGGTCAAATCTTGATCTTTGGTGGTTCGGTTGCAGGGCTTGACTCGGCTTCTCAGCTTTATCTTCTTGATCCAACGGAGGAGAAACCGGCTTGGAGAGTGTTGAATGTTAAGGGAAGCTCACCACAGTTTGCGTGGGGACATACAACATGTGTGGTGGGAGGAACTAGGTTGGTTGTCTTTGGTGGGCAGACAGGTGAAGAGTGGATGCTAAATGAAGCTCATGAGCTGTTGTTAGCCAACTCTAGTACTAAAATCACCTCCTCAAGACATGGAGAGAAGAGGCTCTTCTAG
CDS Sequence
- >Bo7g008400
ATGTCCTGTATGAAAAATCAGATGGAGTGGGATAGCGATTTCGATCTCAGCGGCGGAGATAACGGACCGATTCCGTTTCCGTTGAGTAGTCAACCTAAAACGGCGACGTTTGGGTTCGTGGTCAGCGACGCTCTTGACCCTAACCACCCTATCATTTACGTCAACACCGTCTTCGAGATTATCACTGGCTATCGCGCTGACGAAGTTATTGGTAAAAACTGCCGGTTCTTGCAGTGTAGAGGTCCATATGCTAAAAGGCGACACCCCTCAGTAGATTCCACAGTTGTCTCCAAGATGCGAAGATGTCTAGAAAAAGGCATTGAGTTTCAAGGGGAGTTACTCAACTTTCGCAAAGATGGCTCTCCTTTGATGAACAAGCTGCGCCTAGTCCCTATCCGTGAAGACGACGAGATCACTCACATCATAGGTGTTCTCTTCTTCACAGACGCAAAACTCGCACCGTCTCCTGCAAAAGAGATCACAAGAAAGCGAGATCCCTCCTTCACCTCTGCTTCACCGGTTGGAGAGCGTAACGTCTCTCGTGGGCTGTGTGGGATATTCGAGCTGAGCGATGAGGTCATGGCTTACAGGATCTTGTCTCGGTTGACTCCGCGTGATATCGCGTCTGTTGGTTGCGTGTGTCGGCGGTTTAATGAGTTGACGAAGAACGATGATGTGTGGAGAATGGTCTGCCAAAACACGTGGGGGAGTGAAGCTACACGTGTTCTTGAGACTGCTCCCGGTGCGAAGAGGATCGGTTGGGTGAGACTAGCTCGAGAGTTTACCACACACGAAGCAACTGCTTGGAGGAAGTTCTCCGTTGGAGGTATTGTTCAGCCTTCTCGGTGTAACTTCAGCACTTGTGCTGTTGGGAACAAGATCGTTATCTTCGGCGGCGAAGGTGTGAACATGCAACCGATGAATGATACGTTCGTGTTGGACCTTGGCTCCACTAGTCCTGAGTGGAAATCTGTTCTGGTTAGCTCTCCTCCTCCTGGTCGCTGGGGTCATACGCTCTCTTGTGTCAACGGCTCTCGTTTAGTAGTCTTTGGAGGTTACGGGAGCCATGGGTTACTCAACGATGTCTTCTTGCTAGACCTTGATGCAGACCCTCCTACATGGAGAGAAGTATCCGGTTTAGCTCCTCCAATACCAAGATCATGGCATAGCTCGTGTACGCTCGATGGAACTAAGCTTATTGTTTCTGGTGGCTGTGCTGATTCAGGAGCTTTGCTCAACGATACGTTCTTGCTTGACTTGTCTATGGATATACCGACGTGGAGGGAGATAAGAGTTCCATGGTCTCCTCCATCTCGCCTCGGACATACCTTAACAGTCTACGGTGACAGGAAGATCCTTATGTTTGGTGGTCTTGCGGAGTATGGTTCGAGGAGGTTCCGGTCTAATGATGCGTACACGATGAATCTTAGTGAGAATGAGCCGTGCTGGAGACCCTTGGTTGGGTATGGAACTAGCCTTCCTGGAGGCGTGGCAGCTCCGAGGCTGGATCATGTGGCGATTAGTCTTCCGGGTGGTCAAATCTTGATCTTTGGTGGTTCGGTTGCAGGGCTTGACTCGGCTTCTCAGCTTTATCTTCTTGATCCAACGGAGGAGAAACCGGCTTGGAGAGTGTTGAATGTTAAGGGAAGCTCACCACAGTTTGCGTGGGGACATACAACATGTGTGGTGGGAGGAACTAGGTTGGTTGTCTTTGGTGGGCAGACAGGTGAAGAGTGGATGCTAAATGAAGCTCATGAGCTGTTGTTAGCCAACTCTAGTACTAAAATCACCTCCTCAAGACATGGAGAGAAGAGGCTCTTCTAG
Protein Sequence
- >Bo7g008400
MSCMKNQMEWDSDFDLSGGDNGPIPFPLSSQPKTATFGFVVSDALDPNHPIIYVNTVFEIITGYRADEVIGKNCRFLQCRGPYAKRRHPSVDSTVVSKMRRCLEKGIEFQGELLNFRKDGSPLMNKLRLVPIREDDEITHIIGVLFFTDAKLAPSPAKEITRKRDPSFTSASPVGERNVSRGLCGIFELSDEVMAYRILSRLTPRDIASVGCVCRRFNELTKNDDVWRMVCQNTWGSEATRVLETAPGAKRIGWVRLAREFTTHEATAWRKFSVGGIVQPSRCNFSTCAVGNKIVIFGGEGVNMQPMNDTFVLDLGSTSPEWKSVLVSSPPPGRWGHTLSCVNGSRLVVFGGYGSHGLLNDVFLLDLDADPPTWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLNDTFLLDLSMDIPTWREIRVPWSPPSRLGHTLTVYGDRKILMFGGLAEYGSRRFRSNDAYTMNLSENEPCWRPLVGYGTSLPGGVAAPRLDHVAISLPGGQILIFGGSVAGLDSASQLYLLDPTEEKPAWRVLNVKGSSPQFAWGHTTCVVGGTRLVVFGGQTGEEWMLNEAHELLLANSSTKITSSRHGEKRLF