Information report for Bo3g036300
Gene Details
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Functional Annotation
- Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Homologous
- Brassica napus: GSBRNA2T00075487001, BnaC03G0245900ZS, GSBRNA2T00139104001, BnaA03G0208700ZS
- Brassica rapa: XP_009133563.1, XP_009133562.1, Bra000283
- Raphanus raphanistrum: RrC2388_p6
Gene Resources
- Pfam: PF00010
- UniProt: A0A679KP12
- EMBL: LR756959 , LR758182 , LR759141
- AlphaFoldDB: A0A679KP12
- OMA: AAMCQNS
- InterPro: IPR011598 , IPR036638 , IPR044273 , IPR047265
- PANTHER: PTHR46807 , PTHR46807:SF7
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- SMR: A0A679KP12
- CDD: cd11445
Sequences
gDNA Sequence
- >Bo3g036300
TGGAACACCAAGGTTGGAGTTTTGAGGAGAATTACAATCTGTCCAATAATAGAAGATTTATAAGGTAATATAATGTTTAATCTAATTTATACATTAATTAAAAAGGACTATACAATAGTCTCTGAGTGTGTATATGTGTAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCAGCAGAGCCAAACTCATAGAGATCATACTCAAGCTCAAGCTCAAGCTCAGAAACAGGATCAAGAAACCCTAAGATCCAACACTTTTCTTGAAGATCAAGAAACCGTCTCTTGGATCCAATACCCTCTAGATGAAGATCCATTTGAATCCGAAGACTTCACCTCACCTTTCTTCTCAACTATAGATCCCCTCCAGAGACCTGCTTCAGAGACGGTTAAGCACGAGGCCGGTCCTGTCCCTCCTGATCAAGTCATGCCTCCTCCTAAGTTTAGGCTAACGGATTCATCATCAGGAGGTAGGGAACTAGGAAAAGAACAGTACTCGGTGATGACCGTTGGACCGAACCACTGCGGGAGCAACCAATCTCAAACCGATCCCGATGTCTCATTGACTCATGATCCAAGTAAAACAATCGATGAGAGGCTCTACTCGACCGAAAATTCATCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACAACAAAGAAATAGCTTGTGGAAGAAGCATCACAGCAGACCGTAAGAGAAAACATATAATGGACACTGATGAATCTGTGTCTCAGTCAGATGTATGCTTTATTTTTTAACTCATGATGATAAGTTCTTGAAACGTTTTCTTAGTCCATTTCTCATTGTTCTTGAAACGTTTTACAGGCTATCGGTAATAGCAAGTCGAACCAAGGATCAGGATCAACCCGAAGAAGTCGAGCAGCTGAAGTTCATAATCTTTCCGAAAGGGTATTTTTTTCAATTCGTCTAATTAATTTTTTTTCATCATAAATGTATTTTTTGCTATTGTCAATTTTCACTAACTTTAAACTAATAGCATTTCAATAAAGTTCATTGTTCTTTGAGGTTTATTATTTATTATAAACTAAAACATCTATTTTATCGGAGGGTAGTGTATGATGTATTCAGACAAAGATATATATACTAAGTAACTCTGTTTCATTTGTTAATTAAATTAGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCACGAACTAATACCTCACTGCACAAAAGTAAGTTATAAACTTGAATCTGATATGGGGACTAATTGATTAAGTTGGTGTCAATCGAGTTTGTTTTTCTTGTAGACTGATAAAGCTTCAATTTTGGAAGAAGCCATAGATTATTTGAAGTCACTTCAGTTACAGCTTCAAGTTATGTGGATGGGGAGTGGAATGGCTGGTGCTGCAGCGACTCCTATTATGTTCCCTGGGGTACAGCCTCCTCCACCGTTCATCCGTCAGGTGCAAAGCCCGGTACTGTTGCCACGATTTCCGGTTATCGACGGGTCTGCTATTCAGAACAATCCTGGTTTAGTTTGTCAAAACCCGGTACAAAGCCAAGTTTTTCCCGATCGGTTTGGTAGATATGTTGGCCTATTCCCACGTATGCAGGGCACGTCTCAGGTAAGGCTCATACGTTACGTAGTTAAGTACATATAAGAGCCCAGTGAAATGCCACAAACGACGTAGTTTATTTGACATGTTGTGGTTTGATATTAAACGTAGCCGATGGAGATGATGACATTTGGTTCTCCGGCGGGACAGGAAAGTCAACGTACTTCTGCGCCGACGAAGACCACCGACGGTCCTCGTTAG
CDS Sequence
- >Bo3g036300
ATGGAACACCAAGGTTGGAGTTTTGAGGAGAATTACAATCTGTCCAATAATAGAAGATTTATAAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCAGCAGAGCCAAACTCATAGAGATCATACTCAAGCTCAAGCTCAAGCTCAGAAACAGGATCAAGAAACCCTAAGATCCAACACTTTTCTTGAAGATCAAGAAACCGTCTCTTGGATCCAATACCCTCTAGATGAAGATCCATTTGAATCCGAAGACTTCACCTCACCTTTCTTCTCAACTATAGATCCCCTCCAGAGACCTGCTTCAGAGACGGTTAAGCACGAGGCCGGTCCTGTCCCTCCTGATCAAGTCATGCCTCCTCCTAAGTTTAGGCTAACGGATTCATCATCAGGAGGTAGGGAACTAGGAAAAGAACAGTACTCGGTGATGACCGTTGGACCGAACCACTGCGGGAGCAACCAATCTCAAACCGATCCCGATGTCTCATTGACTCATGATCCAAGTAAAACAATCGATGAGAGGCTCTACTCGACCGAAAATTCATCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACAACAAAGAAATAGCTTGTGGAAGAAGCATCACAGCAGACCGTAAGAGAAAACATATAATGGACACTGATGAATCTGTGTCTCAGTCAGATGCTATCGGTAATAGCAAGTCGAACCAAGGATCAGGATCAACCCGAAGAAGTCGAGCAGCTGAAGTTCATAATCTTTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCACGAACTAATACCTCACTGCACAAAAACTGATAAAGCTTCAATTTTGGAAGAAGCCATAGATTATTTGAAGTCACTTCAGTTACAGCTTCAAGTTATGTGGATGGGGAGTGGAATGGCTGGTGCTGCAGCGACTCCTATTATGTTCCCTGGGGTACAGCCTCCTCCACCGTTCATCCGTCAGGTGCAAAGCCCGGTACTGTTGCCACGATTTCCGGTTATCGACGGGTCTGCTATTCAGAACAATCCTGGTTTAGTTTGTCAAAACCCGGTACAAAGCCAAGTTTTTCCCGATCGGTTTGGTAGATATGTTGGCCTATTCCCACGTATGCAGGGCACGTCTCAGCCGATGGAGATGATGACATTTGGTTCTCCGGCGGGACAGGAAAGTCAACGTACTTCTGCGCCGACGAAGACCACCGACGGTCCTCGTTAG
Protein Sequence
- >Bo3g036300
MEHQGWSFEENYNLSNNRRFIRPQDELVELLWRDGQVVQQSQTHRDHTQAQAQAQKQDQETLRSNTFLEDQETVSWIQYPLDEDPFESEDFTSPFFSTIDPLQRPASETVKHEAGPVPPDQVMPPPKFRLTDSSSGGRELGKEQYSVMTVGPNHCGSNQSQTDPDVSLTHDPSKTIDERLYSTENSSSGGSSGCSFGKNNKEIACGRSITADRKRKHIMDTDESVSQSDAIGNSKSNQGSGSTRRSRAAEVHNLSERRRRDRINERMKALHELIPHCTKTDKASILEEAIDYLKSLQLQLQVMWMGSGMAGAAATPIMFPGVQPPPPFIRQVQSPVLLPRFPVIDGSAIQNNPGLVCQNPVQSQVFPDRFGRYVGLFPRMQGTSQPMEMMTFGSPAGQESQRTSAPTKTTDGPR