Information report for Bo3g004300
Gene Details
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Functional Annotation
- RNA binding protein with nuclease activity essential for stress response. Involved in mechanisms acting on mRNAs entering the secretory pathway. Functionally redundant with TSN2.
Homologous
- Brassica napus: BnaC03G0033600ZS, BnaA03G0027400ZS, BnaA02G0025400ZS, BnaC02G0027500ZS
- Brassica rapa: Bra005933, Bra028701
- Citrullus lanatus: Cla97C06G128240
- Glycine max: Glyma.06G162500, Glyma.04G203000
- Juglans regia: Jr09_00040, Jr02_00090
- Prunus persica: PRUPE_5G139000
- Vitis vinifera: VIT_00s0283g00020
Gene Resources
- Pfam: PF00565 PF00567
- UniProt: A0A0D3B045
- RefSeq: XP_013628949.1
- AlphaFoldDB: A0A0D3B045
- KEGG: boe:106335071
- OMA: CNLAYIN
- InterPro: IPR002999 , IPR016071 , IPR016685 , IPR035437 , IPR047395
- PANTHER: PTHR12302 , PTHR12302:SF9
- SUPFAM: SSF50199 , SSF63748
- PROSITE: PS50304 , PS50830
- Gene3D: 2.30.30.140 , 2.40.50.90
- OrthoDB: A0A0D3B045
- CDD: cd20443
- eggNOG: KOG2039
- STRING: 109376.A0A0D3B045
- HOGENOM: CLU_005966_2_0_1
Sequences
gDNA Sequence
- >Bo3g004300
TACCGGCGACCACCACCGGCAGGCTTTCTAGCCGGAGCAACGTCCTCATCATCTGATTCGACGTCACCGTACTGCCATATCCCAGTCCTAGACTTGCGAGCTTCCTCTTGGAACTTCTCCAAAGCATCAAGAGCAGCTTTTTTGTCCTTGTGCTCAAACCTCCTACGTTTCTCCATCCTCGCTATTCCTCCCTGTGTTCATCATCATCATCATCCATCAATCATCATAAACACCGATTCTTGAAACATGTTTTGTAGAGACAAGGTGAGAGAAAGAGAAGAAACCAACCTGAAGCATTGCAGCGTTTACAGAGACCTCATCGTCGACAGCAATGAGAGTGACAACAAGTTCAGTTCCAGTTCCTTGTCCTTTCACTTTGCCTCCAGATGCGTCTCTTTCTTCAATAACTGCTTTGAACTCTTTACCACTTCCCAACGTTATTGTATGCAAATACTCTCCAGCTTCAGGACCAAAGTCTTCTTCCAAGCTTGGTACCTTAATGTAAGCAAGCCTGCAGAGCTGAGCTAGCCCTGGTGCTGAGGAGACAGAAGGATCAACTGGTCGGATTGCGCTGTAAGGGACCACCTCTTGGTTTCCATAATCGATGTAGAACACTTCAAACTTCTCATCTGGAGACTCAACAGCTGCTCGTGGCGCACTCACAATCTGAAAAAAAAAAACGATTTATTAAAGATTTCAATATATATTAAAGATTTCAATATATATATATATATATATATATATATTTTTTTTTTTAATAAATTTCTATGTAAATTTCTTAAGAAAATTTGGGGCCCTAGGGCAATGTTTCATTTGGCTTGGCTCAACACCGGCCCTGAAAGAAAACAAAATCACAGAAACTAAGAAAGTGGATTGGTGTTACCATTGCACGGTTCCAGGAGTTGTCAAGGCTAAACTGTGCGAGGACAATGTCACCTCTCTTAGGGTTGAAGGAACCAATGATTGGAGCATCTTTAAGACTCAAAGATGAAAGCTGGTTCTGAATAGAAGCTACTCTCTGATCTCCAACCGTTTGAACATAGAACCGACCACCTCCAAGTACTTCTGTAACAGCAACCTTTAAAGTCTCCTTTTGTCTGGTCTCAACGGTTGTACTTCCGTTTGAGACTTCTTGTCCTTCAACATAGTTCTCCCAAATCTGTAAAAAGATCAAAAAACAGTTTAGCAAAGATGATTTTTTTTTTTTACTAAAAAGACATGTGTTAGCTTTGTCACCTTCAGTTTCTGATTCTTAGCAGATCTCTCTGCCTGTTCAAGAATATGTGCTTCAACAATCCTGTCTGCACCAAAGCTAGTCTGCATTTTCGCTAAGCCAGCTTCAAGAAGAACAGTGGCCACATTTGTCCTGGACTCCCACATTGATCCCAAGAAAGTACCGGTTCTATCCACCGTCTCAACTTCAATCTATGTAGTTTATAACATAACATTATCAACAAACCATATAGAACAAGAGGAAACTGAATAAAATATATTAGAGAGAGGAAAAGACTTTGAGCTTGAATAAAATATATAGTTTTAAAAAACATATAGAACAAGAGGAACTGAATAAAATATATTAGAGGTAGGAAAAGACTTTGAGCTTGAATAAAATATATTAGAAAAAAAACAAATATAGAACAAGAGGAAACTGAGATGTAAGTTTAGTCTTTTTTTTTTTTTTGATGGAAGTTTAGTCTTATTACCTCAACATCTCTTTGCATGATTCTACGTCTCATTACAGAGATAGCTTCATCTGAAAAAGGCTCTCCACGACCAGGACATCTAACACCAGAGAACGCAAAGGCAATGCTACACGTTAGCTTCGGAATATAAAGCTTACACCTATGTCCGCTTAGTACATATTCCACAACAGCTGGTATCCTCCTGATTCTTTGCAGCGATGGCAAGAAATCTTTAGCTTTCTTAGCTGCGGCCACGGTTAGGTCTGTGATGTGCATGACAGGAGACTCTTTAGCAGAATGGATTCCTTTCTTTCCAGAGAGAGCACGAGACTCAGCAGCGAGAAGAGCATCATAATGGTTTGATCTCTCTTCAAAATCTCGGTGTCTAACCACATTTCCAAAACCACGAGATAGAAGAAGCTCAGCGATGTTCACTCCAGCTGGCTGGCTGCCAGAGATGGCTGATGCAGCCACTTCCTGGGTATCGCCTTTTGCAGGAGATGGAATGAACACTGATCCAAAATCCATTATCCTATCACCAGCACCTGTTGGGGCAGCACCTTCTGCTGGTGTGACTTTCCTTGAGTATTCCATTTGAACAATAACCTTTACCAAGAGAGAAAAAAAACATCAAATATTGTTCATGTGTGGACACAAATGCAATGACGAGAGTAGTAAGTAATACTCTCTCGGTTTTATTTTAACTTTCGTTTTAGATTTGTGCACAAAGATTAAAAAAATATTTAATTTTGTATATTATATATCTAAATTGGAACAAAGGGAGGGAATACCTGTTTGCCAATAAGCCTCTGTCTCAAGAACTCTCTTGCTTCACGAGCATAAGGAGCTGGCTTCTCTTCTCTACGAGGGTTACCCATTTTAGGACATCTGATGCTCGAAAGATTAACCCTTCTCTCTGCTGCTGGGCTCCCATATGGGATAGCATCATCAGCAACTACAATACAGTCCCCACTCACCACCTCCACTACCTAAAGAGAGATTAAACCAATGACTTAGACAAGCAGAAGACAAAGACAAAGACAAGACAGTATTTCAACAGGGATTTATGTTTACCTTTCCGGTAAAGTTCTGGTCATGAAGTGCCTTAGAGTTTGTAGCTGGTGGAACATAGTTAGCCCACATTTTCACCTTATCTTTTTTGCATTTCAGCTCAGCAGCTTTCAGCTTTCTCTTGGCTTCCTCCTCCATCATGTTTGCACTCCATTCAACATATTTAGCAAGACCCTTAAAATTAAATAACAATCAATGTCATTAACTTTGTTTAAGAGTAGTTTTTACAACTAGTATAAGCACATACATTTTCAACGAGCTCTAGCCCCAAGTCTTTAACTGTTTCCCCATCAGAATAATGAACTGAACCAATCAGATTGTTGAACTTGTCAACGCCTTCAAGAACTATCCGAACCTGTCGAATCCAGCTTCAAGATTAAGATAGTCCAAAATGCCAAAATAAAGATAAAACATGATAAAAAAAAACCTTACATCTCTGCTAAGAACACGGTACTCAGTGAAGTACTTGGCTTCAGCTGCAAAAGGATCAGCAGAAACCTCCACAGACGATGCAGCAGCAGAGGCAGCAAGTCTCTGAGCTGACGTCAGAGGACCTTTAGACTCACCAGAAGAAGCATCTCCATTAGACTCATCTGGAACCGTCTCAACAACGTTCCCATTTGTGTTTCTTCTCCCCATTGATGGAGACTACAATTGAAAAAAAAAATGTCTATAACTTTGTTGCATCTTTAAATGTTTTAAAATGTGAAACAGAGAAGCAAGTTTAATTAATTCACCTGGATTCCAGCAACGAACACTTGCACAAACTGGAACTCTGGAAGAAGATAAACACGGATGCTGCTTCCATCGCGCACTTGCTCAACAATGCCTTCCATGGGCTTGCCTTTGTTGGCAGCTAACAGCCCCATGGCGTCAAAGCCTGCAGAGTCTCCAATGGCAGAAGGAGGAAGGTCTCTGATAGATGCCTCAGCAGCACCAGGAACCTGATTCACCATCAAATCTAATAATAAACTATACGATTTTGGAGAATATAAAGTTAAGGAGGAGGAAGACCAACCTTGCTCCAGCAACCAAATCCTTCTTGGTTAGCCTGCTCTTGAAGCTGTAGCAGCTCTTTAATGAAAGGACTAACCTTACCCTGATTCTGCTGACCTGGCTCCCTAACCTGTCCATAGTACAAGCATTAATAACAACCATAACTCAATCAATATTGCAATATAGTGGTTATTATAATCAATATATTGAGATATAATGGTTATTATAATCAATATTGAAATATAATGGTTATTATAATCACCTTTGCCCAACCATTTTGAACAACAAGCTTTGCAAGATTCTGGGTTCCTAGAAAAACAGATCCAAATTCTCTTCCAATGGCTTCAACTTTGTAATCCACACTGAAAGCAATTTCCTGTTCCAATAACAAAAAAAAGAAAAGAAAAGAAGCACTGGTATAACTTTGTAATCCACACTTAAGATCAAATAATACTATTCAACCACAATAATCACTGTTATAATTAGTTAACAAAGGATTTAGACTTTGGTACCTTTCCAATGCAAAGTTTCCTCAGAAACTCCTTGCTTTCCCATGCAAAAGGCTCATCCTTACCTCCCCTGCGAGCCTAAACATAGAAAAAAATTCCAACAATATGATAATTAATTCAAGTAAAAAAAAAATGGTTGTGAAGAAAGCTTTTGTGTCAAATACCCATTTCTGATCATTGTAATCTTAATTTGAACAATTTTTTTAAAATAAAAAATAATAATGATTTAGAATAAAGAGTAAGCTCACCATCTTAGGTGCCATGAGAGAAGAGAGAGTGATAGTCTTTTCCAGTGGAGCTCCAGGTCCGTTGTGGACCAAAGCAGTGATCACTAAACAGTCTCCGGAGGTAACAGCCTTCACTCTTCCCTTGAGCCATTGGATCTCAGTCGCTGACGCCAT
CDS Sequence
- >Bo3g004300
ATGGCGTCAGCGACTGAGATCCAATGGCTCAAGGGAAGAGTGAAGGCTGTTACCTCCGGAGACTGTTTAGTGATCACTGCTTTGGTCCACAACGGACCTGGAGCTCCACTGGAAAAGACTATCACTCTCTCTTCTCTCATGGCACCTAAGATGGCTCGCAGGGGAGGTAAGGATGAGCCTTTTGCATGGGAAAGCAAGGAGTTTCTGAGGAAACTTTGCATTGGAAAGGAAATTGCTTTCAGTGTGGATTACAAAGTTGAAGCCATTGGAAGAGAATTTGGATCTGTTTTTCTAGGAACCCAGAATCTTGCAAAGCTTGTTGTTCAAAATGGTTGGGCAAAGGTTAGGGAGCCAGGTCAGCAGAATCAGGGTAAGGTTAGTCCTTTCATTAAAGAGCTGCTACAGCTTCAAGAGCAGGCTAACCAAGAAGGATTTGGTTGCTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAGACCTTCCTCCTTCTGCCATTGGAGACTCTGCAGGCTTTGACGCCATGGGGCTGTTAGCTGCCAACAAAGGCAAGCCCATGGAAGGCATTGTTGAGCAAGTGCGCGATGGAAGCAGCATCCGTGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTGTTCGTTGCTGGAATCCAGTCTCCATCAATGGGGAGAAGAAACACAAATGGGAACGTTGTTGAGACGGTTCCAGATGAGTCTAATGGAGATGCTTCTTCTGGTGAGTCTAAAGGTCCTCTGACGTCAGCTCAGAGACTTGCTGCCTCTGCTGCTGCATCGTCTGTGGAGGTTTCTGCTGATCCTTTTGCAGCTGAAGCCAAGTACTTCACTGAGTACCGTGTTCTTAGCAGAGATGTTCGGATAGTTCTTGAAGGCGTTGACAAGTTCAACAATCTGATTGGTTCAGTTCATTATTCTGATGGGGAAACAGTTAAAGACTTGGGGCTAGAGCTCGTTGAAAATGGTCTTGCTAAATATGTTGAATGGAGTGCAAACATGATGGAGGAGGAAGCCAAGAGAAAGCTGAAAGCTGCTGAGCTGAAATGCAAAAAAGATAAGGTGAAAATGTGGGCTAACTATGTTCCACCAGCTACAAACTCTAAGGCACTTCATGACCAGAACTTTACCGGAAAGGTAGTGGAGGTGGTGAGTGGGGACTGTATTGTAGTTGCTGATGATGCTATCCCATATGGGAGCCCAGCAGCAGAGAGAAGGGTTAATCTTTCGAGCATCAGATGTCCTAAAATGGGTAACCCTCGTAGAGAAGAGAAGCCAGCTCCTTATGCTCGTGAAGCAAGAGAGTTCTTGAGACAGAGGCTTATTGGCAAACAGGTTATTGTTCAAATGGAATACTCAAGGAAAGTCACACCAGCAGAAGGTGCTGCCCCAACAGGTGCTGGTGATAGGATAATGGATTTTGGATCAGTGTTCATTCCATCTCCTGCAAAAGGCGATACCCAGGAAGTGGCTGCATCAGCCATCTCTGGCAGCCAGCCAGCTGGAGTGAACATCGCTGAGCTTCTTCTATCTCGTGGTTTTGGAAATGTGGTTAGACACCGAGATTTTGAAGAGAGATCAAACCATTATGATGCTCTTCTCGCTGCTGAGTCTCGTGCTCTCTCTGGAAAGAAAGGAATCCATTCTGCTAAAGAGTCTCCTGTCATGCACATCACAGACCTAACCGTGGCCGCAGCTAAGAAAGCTAAAGATTTCTTGCCATCGCTGCAAAGAATCAGGAGGATACCAGCTGTTGTGGAATATGTACTAAGCGGACATAGGTGTAAGCTTTATATTCCGAAGCTAACGTGTAGCATTGCCTTTGCGTTCTCTGGTGTTAGATGTCCTGGTCGTGGAGAGCCTTTTTCAGATGAAGCTATCTCTGTAATGAGACGTAGAATCATGCAAAGAGATGTTGAGATTGAAGTTGAGACGGTGGATAGAACCGGTACTTTCTTGGGATCAATGTGGGAGTCCAGGACAAATGTGGCCACTGTTCTTCTTGAAGCTGGCTTAGCGAAAATGCAGACTAGCTTTGGTGCAGACAGGATTGTTGAAGCACATATTCTTGAACAGGCAGAGAGATCTGCTAAGAATCAGAAACTGAAGATTTGGGAGAACTATGTTGAAGGACAAGAAGTCTCAAACGGAAGTACAACCGTTGAGACCAGACAAAAGGAGACTTTAAAGGTTGCTGTTACAGAAGTACTTGGAGGTGGTCGGTTCTATGTTCAAACGGTTGGAGATCAGAGAGTAGCTTCTATTCAGAACCAGCTTTCATCTTTGAGTCTTAAAGATGCTCCAATCATTGGTTCCTTCAACCCTAAGAGAGGTGACATTGTCCTCGCACAGTTTAGCCTTGACAACTCCTGGAACCGTGCAATGATTGTGAGTGCGCCACGAGCAGCTGTTGAGTCTCCAGATGAGAAGTTTGAAGTGTTCTACATCGATTATGGAAACCAAGAGGTGGTCCCTTACAGCGCAATCCGACCAGTTGATCCTTCTGTCTCCTCAGCACCAGGGCTAGCTCAGCTCTGCAGGCTTGCTTACATTAAGGTACCAAGCTTGGAAGAAGACTTTGGTCCTGAAGCTGGAGAGTATTTGCATACAATAACGTTGGGAAGTGGTAAAGAGTTCAAAGCAGTTATTGAAGAAAGAGACGCATCTGGAGGCAAAGTGAAAGGACAAGGAACTGGAACTGAACTTGTTGTCACTCTCATTGCTGTCGACGATGAGGTCTCTGTAAACGCTGCAATGCTTCAGGGAGGAATAGCGAGGATGGAGAAACGTAGGAGGTTTGAGCACAAGGACAAAAAAGCTGCTCTTGATGCTTTGGAGAAGTTCCAAGAGGAAGCTCGCAAGTCTAGGACTGGGATATGGCAGTACGGTGACGTCGAATCAGATGATGAGGACGTTGCTCCGGCTAGAAAGCCTGCCGGTGGTGGTCGCCGGTAA
Protein Sequence
- >Bo3g004300
MASATEIQWLKGRVKAVTSGDCLVITALVHNGPGAPLEKTITLSSLMAPKMARRGGKDEPFAWESKEFLRKLCIGKEIAFSVDYKVEAIGREFGSVFLGTQNLAKLVVQNGWAKVREPGQQNQGKVSPFIKELLQLQEQANQEGFGCWSKVPGAAEASIRDLPPSAIGDSAGFDAMGLLAANKGKPMEGIVEQVRDGSSIRVYLLPEFQFVQVFVAGIQSPSMGRRNTNGNVVETVPDESNGDASSGESKGPLTSAQRLAASAAASSVEVSADPFAAEAKYFTEYRVLSRDVRIVLEGVDKFNNLIGSVHYSDGETVKDLGLELVENGLAKYVEWSANMMEEEAKRKLKAAELKCKKDKVKMWANYVPPATNSKALHDQNFTGKVVEVVSGDCIVVADDAIPYGSPAAERRVNLSSIRCPKMGNPRREEKPAPYAREAREFLRQRLIGKQVIVQMEYSRKVTPAEGAAPTGAGDRIMDFGSVFIPSPAKGDTQEVAASAISGSQPAGVNIAELLLSRGFGNVVRHRDFEERSNHYDALLAAESRALSGKKGIHSAKESPVMHITDLTVAAAKKAKDFLPSLQRIRRIPAVVEYVLSGHRCKLYIPKLTCSIAFAFSGVRCPGRGEPFSDEAISVMRRRIMQRDVEIEVETVDRTGTFLGSMWESRTNVATVLLEAGLAKMQTSFGADRIVEAHILEQAERSAKNQKLKIWENYVEGQEVSNGSTTVETRQKETLKVAVTEVLGGGRFYVQTVGDQRVASIQNQLSSLSLKDAPIIGSFNPKRGDIVLAQFSLDNSWNRAMIVSAPRAAVESPDEKFEVFYIDYGNQEVVPYSAIRPVDPSVSSAPGLAQLCRLAYIKVPSLEEDFGPEAGEYLHTITLGSGKEFKAVIEERDASGGKVKGQGTGTELVVTLIAVDDEVSVNAAMLQGGIARMEKRRRFEHKDKKAALDALEKFQEEARKSRTGIWQYGDVESDDEDVAPARKPAGGGRR