Information report for BnaC09G0616900ZS
Gene Details
|
|
Functional Annotation
- Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5’] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Homologous
- Brassica oleracea: Bo9g183540
- Brassica rapa: Bra009582
- Citrullus lanatus: Cla97C09G162100
- Cucumis melo: MELO3C024438
- Glycine max: Glyma.07G015500, Glyma.08G201000
- Gossypium hirsutum: Gohir.A09G081200, Gohir.D09G081300, Gohir.D03G057900, Gohir.A02G117400
- Manihot esculenta: MANES_11G033700
- Prunus persica: PRUPE_1G178600
- Vitis vinifera: VIT_09s0002g03510
Gene Resources
- Pfam: PF03985
- UniProt: A0A078FEA3
- EMBL: LK032003
- AlphaFoldDB: A0A078FEA3
- OMA: ANDRHKA
- InterPro: IPR007133
- PANTHER: PTHR23188 , PTHR23188:SF12
- OrthoDB: A0A078FEA3
- STRING: 3708.A0A078FEA3
Sequences
gDNA Sequence
- >BnaC09G0616900ZS
TGGCGTCGTACCGGCCGCCGCCTCCTCCGTCTCCTCTCCCACCGCCGCCTCAAAATCCCCCACCCCCACCACCTCTTCCTCCGTCGTTACCTCCTCCCGTCCCTCCCCCACCGCCGTCGCATCAACCTTACGCTTATCCTCCTCATACTTACTATCAACAGCCGTCTCACTATCCTCCTCCTCAATTCAACCAGCTTCAAGCTCCTCCGCCTCCGCCTCCCCCGTCAGCACCTCCTCCTACCGTACCGGATCCTCCTCGGAACCAAGCGGCCAATGACCGCCACAAAGCGGCCTCCAAGCCGCCGCGGGAGCGTCCTCCATCGAAGCAGCACCACAGGCCTCATCATCATCCGCATAGTAAGAATCCGGAAGAGGAGAGGAGGCAAAGGAAGAAGAGGGAGGCAGAGAAAGAGAAAGAGAGGCAGCAGATGAAATCGTCGTCTCACAAGTCTCAGGTTCCCAAGGGGCACACGGAGGAGAGGAAGCCTACGCCTCTTCTCACAGCCGATAGGGTCGAGAATCGGTTAAAGAAACCAACCACCTTCATCTGCAAGCTCAAGTCAGTCACTCTCCTTCCTCCCTCTTTTCTCTTTGTTGCTTGTTTCTTGGCTGAAGATATTATCTTCTTCTTCTTCTTCCAGGTTCCGGAATGAGCTTCCTGATCCTACTGCTCAGCTTAAGCTTATGACCATCAAGCGTGATAAAGATCAGTATGTTACTCTTTTAATTCATATTTGTGTTTCTACTTATATCTGATTTAGCTCTTTGATCCCATTAGATACACAAAGTATACCATCACGTCTCTGGAGAAGTTATGGAAACCAAAGATCTTCGCCGAGCCTGATCTTGGAATACCCTTGGATCTTCTTGACCTAAGTGTCTACAAGTAATGATCTCTCCCTCTCTCTCTCTCAAAAATATCTTATAGATTGCTTCAGATTCTTATTGTCTTGGCTCTTTCCAGACCACCGAAAGTGAGGCAGCCTCTTGCCCCTGAAGATGAAGAACTGTTGCGTGATGATGATGCTGTTACCCCTATCAAGAAAGAAGGCATCAAGAGAAAAGAAAGACCTACCGATAAAGGTGTTTCCTGGCTCGTCAAAACGCAGTACATTTCTTCTATTAATAATGAATCCACAAGACAGGTATATCAATCTCTCTTGGTTCTTGGAATATTCTGCTTTGTTTTTTTTAGTGTGAAGACGGTATCAAAACTTCTTTGTTTTACTATGTGTAGTCTCTAACTGAGAAGAGAGCAAAAGAACTGCGAGAGATGAAAGGAGGCGTCGACATCTTGCAAAATCTTAACAATAGGTTTGTGGTGGTATTTGTGTTTCTCTAAAGAAAGTGAATAAAAATTATTGGTGTAATGGGTTCCTGTTTCTTGGTCTTTTAGAGAGAGACAGATCAAGGATATTGAAGCATCCTTCGAGGCCTGCAAATCTCGACCAGTTCATGCCACCAATAAAAAATTGCAGCCTGTTGAAGTTTTACCACTATTGCCATATTTCGATAGGTTTGTTCCTCTTTATTTTCCCTGTTGAGGTCTAACTGTATAGTACTTAAAGAGGGGCGTTGGTCCTGTTCCAATGTTTCTTTGCAAGAGTTATAGTGGATGGAAAACCAGTAATAGTTTTCACTGGACTCGTAGCATATGCTAATCTATTTCAATCTTCCTTTTTAATGTTCGACTCAGGTACGAGGAGCAGTTTGTGGTAGCGAATTTTGATAGTGCTCCTACAGCTGATTCTGAGTTTTTTGGCAAGTTGGACTCTTCAATTCGTGATGAACATGAATCACGGGTGAGTTTGTGTTGTGGTTGGTCCAGTTATCACTTTCCTTCCTTGCGTAGTAATATGTTCAATGAGATTAATGCGAAAACGATATCACTTTCCTTCCCTGCGTAAAATTGACCTCAGCTCTGGACCTTCATCCTTGACAGGCCATTTTAAAAAGCTATGTAATTGCTGGATCGGACAATAGCAATCCCGAAAAAATTCTTGCGTACATGGTTCCTTCCTTGGACGAGGTAGACATGCTTTTTTCTCAATTTGTTTATGCTACCTGCTTTTTTTATATCAACTTGTTTATATGTTTCTGTGCCAGTTGTCTAAGGATATGCATGATGAAAACGAGGATATCTCTTATACTTGGGTTCGCGAATACCTCTGGGATGTATGTACCTTAGCCCAATGTCATTTGAGTAAAATTTGATTGTTTTTGGTTGCTAATCGAAATAAAAAATATTACCTGTTCTATAACAGATACCACCAAAGGAACCAAACGAGCGTGACACATACCTGGTGTCGTTTGAGGATGGGACCGCTAGCTATTTGGTATTCTCTAAACTATACCTGCATCTCTTTTTGTTACATTCGGTTGTTCCATATGAGATTGACCCAGTGAGCATGTGGCAGCCCCTACCAACTAGGCTGAACATGAGGAAGAGAAGGGCCAGGGAAGGAAGAGCGTTTGATGAGATTGAACACTTACCAGTACCTTCAAGGGTGACTGTAAGGAACAGATCGTCTGTATCAATAATCGAACATAAAGATTCAATGGTAACAGTAAAATCCGAACATTTAATCCTTTACAACACAAGAAGTGTATGTGGAAGATTCTACAACTCTTCTTTGGATGTAGGTTAATTCAAATTCTAGGAATGGTGCGTCGAGCTCCAAGATGAGAAGGTTAGAGGACGAAGAAGGCCTTGGCAGATCTTGGAAACACGGGTCGGAACAAGATGCTAATCAATATAGTGATAATAATGATGATTATTCTGAGTGA
CDS Sequence
- >BnaC09G0616900ZS
ATGGCGTCGTACCGGCCGCCGCCTCCTCCGTCTCCTCTCCCACCGCCGCCTCAAAATCCCCCACCCCCACCACCTCTTCCTCCGTCGTTACCTCCTCCCGTCCCTCCCCCACCGCCGTCGCATCAACCTTACGCTTATCCTCCTCATACTTACTATCAACAGCCGTCTCACTATCCTCCTCCTCAATTCAACCAGCTTCAAGCTCCTCCGCCTCCGCCTCCCCCGTCAGCACCTCCTCCTACCGTACCGGATCCTCCTCGGAACCAAGCGGCCAATGACCGCCACAAAGCGGCCTCCAAGCCGCCGCGGGAGCGTCCTCCATCGAAGCAGCACCACAGGCCTCATCATCATCCGCATAGTAAGAATCCGGAAGAGGAGAGGAGGCAAAGGAAGAAGAGGGAGGCAGAGAAAGAGAAAGAGAGGCAGCAGATGAAATCGTCGTCTCACAAGTCTCAGGTTCCCAAGGGGCACACGGAGGAGAGGAAGCCTACGCCTCTTCTCACAGCCGATAGGGTCGAGAATCGGTTAAAGAAACCAACCACCTTCATCTGCAAGCTCAAGTTCCGGAATGAGCTTCCTGATCCTACTGCTCAGCTTAAGCTTATGACCATCAAGCGTGATAAAGATCAATACACAAAGTATACCATCACGTCTCTGGAGAAGTTATGGAAACCAAAGATCTTCGCCGAGCCTGATCTTGGAATACCCTTGGATCTTCTTGACCTAAGTGTCTACAAACCACCGAAAGTGAGGCAGCCTCTTGCCCCTGAAGATGAAGAACTGTTGCGTGATGATGATGCTGTTACCCCTATCAAGAAAGAAGGCATCAAGAGAAAAGAAAGACCTACCGATAAAGGTGTTTCCTGGCTCGTCAAAACGCAGTACATTTCTTCTATTAATAATGAATCCACAAGACAGTCTCTAACTGAGAAGAGAGCAAAAGAACTGCGAGAGATGAAAGGAGGCGTCGACATCTTGCAAAATCTTAACAATAGAGAGAGACAGATCAAGGATATTGAAGCATCCTTCGAGGCCTGCAAATCTCGACCAGTTCATGCCACCAATAAAAAATTGCAGCCTGTTGAAGTTTTACCACTATTGCCATATTTCGATAGGTACGAGGAGCAGTTTGTGGTAGCGAATTTTGATAGTGCTCCTACAGCTGATTCTGAGTTTTTTGGCAAGTTGGACTCTTCAATTCGTGATGAACATGAATCACGGGCCATTTTAAAAAGCTATGTAATTGCTGGATCGGACAATAGCAATCCCGAAAAAATTCTTGCGTACATGGTTCCTTCCTTGGACGAGTTGTCTAAGGATATGCATGATGAAAACGAGGATATCTCTTATACTTGGGTTCGCGAATACCTCTGGGATATACCACCAAAGGAACCAAACGAGCGTGACACATACCTGGTGTCGTTTGAGGATGGGACCGCTAGCTATTTGCCCCTACCAACTAGGCTGAACATGAGGAAGAGAAGGGCCAGGGAAGGAAGAGCGTTTGATGAGATTGAACACTTACCAGTACCTTCAAGGGTGACTGTAAGGAACAGATCGTCTGTATCAATAATCGAACATAAAGATTCAATGGTTAATTCAAATTCTAGGAATGGTGCGTCGAGCTCCAAGATGAGAAGGTTAGAGGACGAAGAAGGCCTTGGCAGATCTTGGAAACACGGGTCGGAACAAGATGCTAATCAATATAGTGATAATAATGATGATTATTCTGAGTGA
Protein Sequence
- >BnaC09G0616900ZS
MASYRPPPPPSPLPPPPQNPPPPPPLPPSLPPPVPPPPPSHQPYAYPPHTYYQQPSHYPPPQFNQLQAPPPPPPPSAPPPTVPDPPRNQAANDRHKAASKPPRERPPSKQHHRPHHHPHSKNPEEERRQRKKREAEKEKERQQMKSSSHKSQVPKGHTEERKPTPLLTADRVENRLKKPTTFICKLKFRNELPDPTAQLKLMTIKRDKDQYTKYTITSLEKLWKPKIFAEPDLGIPLDLLDLSVYKPPKVRQPLAPEDEELLRDDDAVTPIKKEGIKRKERPTDKGVSWLVKTQYISSINNESTRQSLTEKRAKELREMKGGVDILQNLNNRERQIKDIEASFEACKSRPVHATNKKLQPVEVLPLLPYFDRYEEQFVVANFDSAPTADSEFFGKLDSSIRDEHESRAILKSYVIAGSDNSNPEKILAYMVPSLDELSKDMHDENEDISYTWVREYLWDIPPKEPNERDTYLVSFEDGTASYLPLPTRLNMRKRRAREGRAFDEIEHLPVPSRVTVRNRSSVSIIEHKDSMVNSNSRNGASSSKMRRLEDEEGLGRSWKHGSEQDANQYSDNNDDYSE