Information report for BnaC09G0520200ZS
Gene Details
|
|
Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Brassica oleracea: Bo9g166100, Bo3g009670
- Brassica rapa: Bra006242
- Citrullus lanatus: Cla97C05G095010
- Cucumis melo: MELO3C014878
- Cucumis sativus: CsGy3G024010
- Gossypium hirsutum: Gohir.D07G234900, Gohir.A10G159100, Gohir.A07G227800, Gohir.A09G038100
- Prunus avium: Pav_sc0001080.1_g1100.1.mk
- Prunus persica: PRUPE_3G305400
- Vitis vinifera: VIT_14s0068g02140
Gene Resources
- Pfam: PF02201
Sequences
gDNA Sequence
- >BnaC09G0520200ZS
AGACGCAGCGGAACAACGGCGACGAAGGAGAATCAGGAGAAGAAGAAACGAAGCTGCGAATCTTCGCATTAGTAAGGTACGCTACTCTTTCTCGATAGATTTTTCAAATAGTCTCCGGAGATTATCCATACTCGTTAAATTGTGCATCAACCTTAGAAAACAAAAAAAATTAGGGTTTTTAGGCTCCGATTTCTCTAGGTATCCGATCTATCGTTCCCTGATGTTTGTTAGATTAATCAAACCGAAGATGTTGTGGAATCATTAGAAAAGGTGTTCTCTTTATGTGGTTTTAAACCAGATTTGTATTTGAATTGAAGTGTAAAGAGTGTACTTTGTTCTGAATTTTACAGGCATCGATGTCTGCTAACAACAACAATCCACAGAAGCCTCAACAAGGCTCTGCGCCTCCACCATTCGGCGTTAACCCTGGGATGGCCTCTGCATCTGTCCCCGGAAACCAAGGCTTTACTCAGTCTCACATGGCACCTAACTTTCCAGCTCAGTTTCAATTCTCACAAGCCCAGGCCATGGCCCATGCTCAAGCCCAAGCTCAGTCTAAAGCCCAAGCTCAGTTCCAAGCTCAGATGCAAGCAGGGATGACGATGAACCAAGGGCAAGGCTCCCAGGGGATTGGTGGTGTGTTGGGTTCGTCTTCTCCTTCCATGACTCCTGGTAGCTTGAACATGAAGAGGTTCCAGCAGAGGCCGCCGATGCGGCCTCCTTCTGGTTTCCCCGCGAGTAACAACACTGTCTCCCCCATGAGAACGATGGAGTTAACTCCCGCGGCGAGGAAGAAGAAAATGAAGCTTCCTGAGAAGTCTTTGCAGGAGAGGGTGGCGGCAATCTTGCCTGAGTCTGCGTTATACACGCAGCTTCTTGAGTTTGAGTCAAGGGTTGATGCTGCTTTGAGTAGGAAGAAAGTTGACATCCAGGAGGCTCTTAAGAACCCTCCTTGCACTCAGAAGACGCTTAGGATCTATGTGTTCAACTCGTTTGCGAACCAAAACAACACCATCCCTGGGAATCCAAACGCTGACCCGCCGACATGGACTCTTAAGATTGTTGGTAGGATCCTGGAAGATGGGGTGGATCCGGACCAGCCAGGTTTTGTTCAGCAAGCGAACCCATCGCATCCAAAATTCTCTTCTTTCTTCAAGAAGGTAATAGTTAACCTGGACCAGAGGCTGTATCCTGAGAACTCGGCGATCACATGGGAGAGTGCTAGATCTCCTGCTCCCCAGGAAGGGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTACTATTCGGTTGGAGATGAACTACGTCCCTGAAAAGTTCAAGCTTTCTACTGCGTTGATGGATGTTCTCGGGATTGAGGTTGAGACAAGACCAAGAATTATCTCTGCGATATGGCATTACGTTAAGGCGAGGAAGTTACAGAACCCAAATGATCCTTCTTTCTTCAACTGCGACGCTGCGCTTCACAAAGTCTTTGGGGAAGAGAAGGTGAAGTTCACAATGGTTTCTCAGAAGATATCTCATCACTTGTCACCTCCACCGCCGATTCATTTAGAACACAAGATCAAGCTGTCGGGAAACAACCCGGCTATATCGGCATGTTACGATGTCCTGGTGGATGTGCCGTTTCCGATTCAGAGGGATCTGAACAACCTATTGGCCAACGCGGAGAAGAATAAAGAGATTGAGGCTTGTGATGAAGCTATATGTGCTGCCATAAGGAAAATCCATGAGCATAGGAGGAGACGTGCGTTTTTCTTGGGATTCAGCCAGTCGCCAGTTGAGTTCATAAACGCACTGATCGAATCTCAGAGCAAGGATCTGAAGGTGGTAGCGGGAGAAGCTAGTCGAAATGCTGAGAAAGAACGTCGAGCAGACTTCTTCAATCAACCTTGGTAAGCTCATTATCTATGTTCTCTCTGTTTTTGTCTGATAACTTCACTCGCTACTAGAGTTGTGAAAGTGTAGGAACTTCACTGATTGATTGATGATATGTTTATGAATCATGAAATGTTGCAGGGTTGAAGATGCAGTTATACGTTACTTGAACCGGAAGCCAGCAGCTGGGAACGAAGGACCAGGGACCTGGTGAGTATCTTGCAGGTACCTTACCATCAAGTCTAAAGAAAAAAAATGTTGTAGGAGCAATCTGGTTTATTTGTAATTTCATGTATGATGAAACCTTAGTACTTCATAATTTAGCTTTGATTTGTAGCTACTTTGGTTGATTCTTAATTATACTTTTGATAATAAGCCGAACGAATATATATAATCTTA
CDS Sequence
- >BnaC09G0520200ZS
ATGTCTGCTAACAACAACAATCCACAGAAGCCTCAACAAGGCTCTGCGCCTCCACCATTCGGCGTTAACCCTGGGATGGCCTCTGCATCTGTCCCCGGAAACCAAGGCTTTACTCAGTCTCACATGGCACCTAACTTTCCAGCTCAGTTTCAATTCTCACAAGCCCAGGCCATGGCCCATGCTCAAGCCCAAGCTCAGTCTAAAGCCCAAGCTCAGTTCCAAGCTCAGATGCAAGCAGGGATGACGATGAACCAAGGGCAAGGCTCCCAGGGGATTGGTGGTGTGTTGGGTTCGTCTTCTCCTTCCATGACTCCTGGTAGCTTGAACATGAAGAGGTTCCAGCAGAGGCCGCCGATGCGGCCTCCTTCTGGTTTCCCCGCGAGTAACAACACTGTCTCCCCCATGAGAACGATGGAGTTAACTCCCGCGGCGAGGAAGAAGAAAATGAAGCTTCCTGAGAAGTCTTTGCAGGAGAGGGTGGCGGCAATCTTGCCTGAGTCTGCGTTATACACGCAGCTTCTTGAGTTTGAGTCAAGGGTTGATGCTGCTTTGAGTAGGAAGAAAGTTGACATCCAGGAGGCTCTTAAGAACCCTCCTTGCACTCAGAAGACGCTTAGGATCTATGTGTTCAACTCGTTTGCGAACCAAAACAACACCATCCCTGGGAATCCAAACGCTGACCCGCCGACATGGACTCTTAAGATTGTTGGTAGGATCCTGGAAGATGGGGTGGATCCGGACCAGCCAGGTTTTGTTCAGCAAGCGAACCCATCGCATCCAAAATTCTCTTCTTTCTTCAAGAAGGTAATAGTTAACCTGGACCAGAGGCTGTATCCTGAGAACTCGGCGATCACATGGGAGAGTGCTAGATCTCCTGCTCCCCAGGAAGGGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTACTATTCGGTTGGAGATGAACTACGTCCCTGAAAAGTTCAAGCTTTCTACTGCGTTGATGGATGTTCTCGGGATTGAGGTTGAGACAAGACCAAGAATTATCTCTGCGATATGGCATTACGTTAAGGCGAGGAAGTTACAGAACCCAAATGATCCTTCTTTCTTCAACTGCGACGCTGCGCTTCACAAAGTCTTTGGGGAAGAGAAGGTGAAGTTCACAATGGTTTCTCAGAAGATATCTCATCACTTGTCACCTCCACCGCCGATTCATTTAGAACACAAGATCAAGCTGTCGGGAAACAACCCGGCTATATCGGCATGTTACGATGTCCTGGTGGATGTGCCGTTTCCGATTCAGAGGGATCTGAACAACCTATTGGCCAACGCGGAGAAGAATAAAGAGATTGAGGCTTGTGATGAAGCTATATGTGCTGCCATAAGGAAAATCCATGAGCATAGGAGGAGACGTGCGTTTTTCTTGGGATTCAGCCAGTCGCCAGTTGAGTTCATAAACGCACTGATCGAATCTCAGAGCAAGGATCTGAAGGTGGTAGCGGGAGAAGCTAGTCGAAATGCTGAGAAAGAACGTCGAGCAGACTTCTTCAATCAACCTTGGGTTGAAGATGCAGTTATACGTTACTTGAACCGGAAGCCAGCAGCTGGGAACGAAGGACCAGGGACCTGGTGA
Protein Sequence
- >BnaC09G0520200ZS
MSANNNNPQKPQQGSAPPPFGVNPGMASASVPGNQGFTQSHMAPNFPAQFQFSQAQAMAHAQAQAQSKAQAQFQAQMQAGMTMNQGQGSQGIGGVLGSSSPSMTPGSLNMKRFQQRPPMRPPSGFPASNNTVSPMRTMELTPAARKKKMKLPEKSLQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCTQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIVGRILEDGVDPDQPGFVQQANPSHPKFSSFFKKVIVNLDQRLYPENSAITWESARSPAPQEGFEIKRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIISAIWHYVKARKLQNPNDPSFFNCDAALHKVFGEEKVKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAISACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAEKERRADFFNQPWVEDAVIRYLNRKPAAGNEGPGTW