Information report for BnaC08G0245900ZS
Gene Details
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Functional Annotation
- Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3’ UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.
Homologous
- Actinidia chinensis: CEY00_Acc21854
- Brassica oleracea: Bo5g025450
- Citrullus lanatus: Cla97C06G124430
- Cucumis melo: MELO3C017295
- Glycine max: Glyma.03G107300, Glyma.07G118800
- Juglans regia: Jr06_13930, Jr15_09460
- Medicago truncatula: Medtr5g066400
- Prunus persica: PRUPE_4G154200
- Rosa chinensis: RchiOBHm_Chr5g0028921
- Sesamum indicum: SIN_1006402
Gene Resources
- Pfam: PF00022
Sequences
gDNA Sequence
- >BnaC08G0245900ZS
TGTACGGCGGAGGTGGGTTTCTCTTCAAACCCTTGATTTGCTTTCTTTTTTTTCCTCTCGTTACAAAGTCTGAATCTTTCGGTGGTGGGTTTGTTCCACAGATGAAGTGTCAGCTATAGTGGTTGACTTGGGTTCGCACACTTGCAAGGCTGGCTACGCCGGCGAAGATGCTCCCAAGGCCGTCTTCCCTTCCGTAAAGCTCACTCTTTTTTCGATCTTTCGTGCTTCTTATTGTTTTGATTCTATCATTTGATGTAGCCGGAGCTTGGTGTTAGTGTAGAATCGCGGTTTGGTCTCTTGTATCTTCAGACAATGTGAGTTACTAACTTAAGGTTCTTCTCATGTGTTCATAAGGTTGTTGGGGCAGTAGATGGAGTAGAGGCAATGGATGTGGATGTTGATTCTGCAAAGACAAATTCGAATTCTGAGGATTCAAAGTCTGAAAAGGAGAAGGGTAAACGCAAGCTCTGTGTGGGATCTCAAGCCTTGAATTACCGCCGGGATCATATGGAGGTTATTAGCCTTTTTATCCTCTTTTGATTAGTATTGAAAGTGTGAAGTTTGTTAATGAACTGCAAGTTGTATTTTCTGACTCACCAGATCTTGTCACCAATCAAAGATGGTATAGTTTCTGATTGGGATTTGGTGGACAACATATGGGAGCATGCTTTCAGGTAACGGTATAAAGCTTTAGACTTTTTCTTGGTTGTTGTTTGATGTCATCTCTAATATGTTCTTTTATGTGTGAAGGAGTTGTCTGATGATTGATCCTAAGGAGCATCCCATGCTGCTAGCTGAGCCTCCTTTAAACACTCAACAGCAGAGAGAGAAGTCAGGATTTATCTGTTTATATATATCCTTTTTTTTCTATATTGATTCATCTTGGAGTGTGTTACTGATTTTCTCAAATGTATGACTGACAGGGCGGCAGAGCTAATGTTTGAAAAATACAAAGTTCCAGCATTGTTTATGGCTAAGAATCCTGTATATTCCCTCTTACCTTGTGTCATTGGTCTCCTGCTCGCTCTTTTGAATTCAGATGTCTAACTATAGTTTTTTTGGTGCTAGGTTCTGACCTCTTTTGCTACTGGGCGTGCTACTTCATTGGTTGTTGACTGGTAAGACTTTTGTACTACAAAATTATTGAAACTTTTCTCTAGTATGTGGAAGCTTCCACTTTTGTCATCTTGTTTCTGTTTGTTGTGATTAATCTGAGGAGGCACTGATGGTACTTTTATCCATACTATATTGTGTTCCAGCGGTGGAGGATCAACTACTATTTCACCTGTGCATGAAGGCTATGTCCTTCAGAAGGTATATGTATTACTAGACTTGACTAGAACTCAAGCTTTGTGATGCTGTTTCTTTGGGTTTAGATTTTCTCCTGCAAGAGAAAGTTTTCTATCTTTATTTCCAATGTGTTTCCATCTTTCTTTACTCTCCGATTGTTGACCATCTTGCAGGCTGTTGTGTCGAATCCAGTTGGAGGGGAATTTCTCACTGACTGCTTACTGAAAAGCTTGGAGTCTAAAGGAATTAAAGTAAGTTAAACTAATTTTTACACTGCTATTCTTTTGAGCCAATTTATCTGAATTTTGCTGGTTATATCTTTTGCAGATAAGGCCTAGATACTCTTTCAAGAGAAAGGAAGTACGCCCAGGGGAATTCCAGGTGTGTAGATAGATCAGTTGATGAAACTACTATTTGAGTATCCTTTATTTATTGAGACACATAACAAGAAAGGGTTTTGAAAATTAATTGTGTGTTCTTGACATAGTAGATGTGATATTCTTAGTGGGGAATGTGACAGAGAAATTTTAGCATTTGTCTCAATTTCAGTTTAGATAGTAGCACTAGCAAATTGTTTAGAGGTCGTTGGAGTGTGTAGTATCTTATCTCCTCTCTTTGGATGCTTGCAGGTTGAAGATGTAGGTCTTCCTGATACCACGGAAAGCTACAAGCTCTTCTGCCAGGTCTGTAGTTGATAACTACACCTGTTTGAAAATCTCTGTTGTTTAATAACTCGGCGTTTTTTTTTTCTCAACAGAGAATGATAGTGGGTGATATCAAGGATTCTATTTGCCGGGTTCCTGATACTCCCTATGACGGTATGTATGTTATGCTCTTTTGTCTTCCATTGGTTTGAGAAATTGTTTTTTCTTCAGAATCTAGAGTGTTTTAAGAGTTGAAATGTTAGGTATTTTTATCTTTAAATGTTCATTGATCTTGTAGCCTTAGTTTTCCTGACGTGTTGCTTTTATCTGCAGACAAGTCATATTCAAACATCCCAACTACATCCTACGAGCTTCCTGATGGCCAGTAAGCTCCTTTTTATATATCTATTGCGATTTTTTTGGTGTGCCTCAGATGTTTATGCTGCAGTTGCTGTTGCTTTCCAAGTATAAGATCTGTGGTTGGTATACTGCAGGACACTCGAGATTGGTGCTGATAAGTTCAAAATTCCTGATGCGATGTTCAACCCGTCCATAGTTCAGGTACCAAAACTCAGCACCGCTTAAGCTATGGATTGTATCTTCTCTTGAGCTGTTTTGAGTCTGAAATAGTTTTGTCAGAGATTTTATTGAGTGACTCTCTGTGTTTATTGAAACCTCCAAGACAATTCCTGGAACGGAGAAGTATGCAGAGATGATTCCTTCTGTTCGTGGGTTGCCACACATGGTAAATGCGTAGTCTCTACTCTAGTCACTGCAAACGGTTTCGTCTCTTTACTGACTCTAACTCCACTCTCCATTTTATAAACTTGAACAGGTCATGGAGAGCATCAACAAATGTGATGTGGATATCCGGAGAGAGTTGTATAGTAGCATACTGGTAACGTATCAATCAATTTCAACTCTTAAGATCCCTAACTTGTATAGTAGATATTCATACTTTTTTCTTCAGCTTGCTGGTGGCACATCATCAATGCAGCAGTTGAAAGAACGTCTCGAAAAGGACTTAATAGAAGTATTGTCCTCTCTCGCTTGCAAACTTTCCTTGATTTTTTAAGATGTCCTAAAGAAAAGCGTTTATCATCCATCTGTTATCTTTCATTTCAGGAGTCTCCTCACTCTGCTCGGGTCAAAGTGTTGGCGAGTGGTAACACAACAGAAAGAAGATTCAGGTTTGATATATAGTTTCACTTCTAAGAGTTCACAACTCATTGATTGTTCCTTTACTGACCATTAAGATTTTGGATCTTGAGTAATTAAATACCTTGTTATGTTATATATATATATATATGTGTGTGTCCAGTGTGTGGATAGGAGGGAGTATATTAGCATCATTAGGCTCGTTTCAACAGATGTGGTTCTCCAAATCAGAGTAAGTTTCTGCCTTTCGTTGCTTCTTTCCATTGATCACAGACTCCCAAAAAAGAAGCTGATATTTAGTTTCTCGGGTAACACATGAAGGTACGAGGAACATGGCGCTTCATACATCCAGAGAAAGTGTCCTTAA
CDS Sequence
- >BnaC08G0245900ZS
ATGTACGGCGGAGATGAAGTGTCAGCTATAGTGGTTGACTTGGGTTCGCACACTTGCAAGGCTGGCTACGCCGGCGAAGATGCTCCCAAGGCCGTCTTCCCTTCCGTTGTTGGGGCAGTAGATGGAGTAGAGGCAATGGATGTGGATGTTGATTCTGCAAAGACAAATTCGAATTCTGAGGATTCAAAGTCTGAAAAGGAGAAGGGTAAACGCAAGCTCTGTGTGGGATCTCAAGCCTTGAATTACCGCCGGGATCATATGGAGATCTTGTCACCAATCAAAGATGGTATAGTTTCTGATTGGGATTTGGTGGACAACATATGGGAGCATGCTTTCAGGAGTTGTCTGATGATTGATCCTAAGGAGCATCCCATGCTGCTAGCTGAGCCTCCTTTAAACACTCAACAGCAGAGAGAGAAGGCGGCAGAGCTAATGTTTGAAAAATACAAAGTTCCAGCATTGTTTATGGCTAAGAATCCTGTTCTGACCTCTTTTGCTACTGGGCGTGCTACTTCATTGGTTGTTGACTGCGGTGGAGGATCAACTACTATTTCACCTGTGCATGAAGGCTATGTCCTTCAGAAGGCTGTTGTGTCGAATCCAGTTGGAGGGGAATTTCTCACTGACTGCTTACTGAAAAGCTTGGAGTCTAAAGGAATTAAAATAAGGCCTAGATACTCTTTCAAGAGAAAGGAAGTACGCCCAGGGGAATTCCAGGTTGAAGATGTAGGTCTTCCTGATACCACGGAAAGCTACAAGCTCTTCTGCCAGAGAATGATAGTGGGTGATATCAAGGATTCTATTTGCCGGGTTCCTGATACTCCCTATGACGACAAGTCATATTCAAACATCCCAACTACATCCTACGAGCTTCCTGATGGCCAGACACTCGAGATTGGTGCTGATAAGTTCAAAATTCCTGATGCGATGTTCAACCCGTCCATAGTTCAGACAATTCCTGGAACGGAGAAGTATGCAGAGATGATTCCTTCTGTTCGTGGGTTGCCACACATGGTCATGGAGAGCATCAACAAATGTGATGTGGATATCCGGAGAGAGTTGTATAGTAGCATACTGGTAACGTATCAATCAATTTCAACTCTTAAGATCCCTAACTTGTATAGTAGATATTCATACTTTTTTCTTCAGCTTGCTGGTGGCACATCATCAATGCAGCAGTTGAAAGAACGTCTCGAAAAGGACTTAATAGAAGAGTCTCCTCACTCTGCTCGGGTCAAAGTGTTGGCGAGTGGTAACACAACAGAAAGAAGATTCAGTGTGTGGATAGGAGGGAGTATATTAGCATCATTAGGCTCGTTTCAACAGATGTGGTTCTCCAAATCAGAGTACGAGGAACATGGCGCTTCATACATCCAGAGAAAGTGTCCTTAA
Protein Sequence
- >BnaC08G0245900ZS
MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAVDGVEAMDVDVDSAKTNSNSEDSKSEKEKGKRKLCVGSQALNYRRDHMEILSPIKDGIVSDWDLVDNIWEHAFRSCLMIDPKEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHEGYVLQKAVVSNPVGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRPGEFQVEDVGLPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTTSYELPDGQTLEIGADKFKIPDAMFNPSIVQTIPGTEKYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILVTYQSISTLKIPNLYSRYSYFFLQLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRKCP