Information report for BnaC04G0590800ZS
Gene Details
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Functional Annotation
- Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.
Homologous
- Brassica oleracea: XP_013632091.1, Bo4g192880, XP_013632092.1
- Brassica rapa: XP_009142152.1, Bra037742, XP_009142153.1, XP_009133563.1, XP_009133562.1, Bra000283
- Raphanus raphanistrum: RrC2388_p6
Gene Resources
- Pfam: PF00010
- UniProt: A0A078FNY5
- RefSeq: XP_013687860.1
- EMBL: HG994368 , LK032047 , LR757272 , LR758495 , LR759454
- AlphaFoldDB: A0A078FNY5
- OMA: RSHTFLE
- InterPro: IPR011598 , IPR036638 , IPR044273 , IPR047265
- PANTHER: PTHR46807 , PTHR46807:SF7
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A078FNY5
- SMR: A0A078FNY5
- CDD: cd11445
- STRING: 3708.A0A078FNY5
Sequences
gDNA Sequence
- >BnaC04G0590800ZS
TGGAACATCAAGGTTGGAATTTTGAGGAGAATTGCAACTTATCCAACAATAGGAGATCATCTTTAAGGTATATTATGTTTAATCTAACTATTCATTTAGCGTTTAAAAAAAAAAATCTATATAATAGTATCTGAGTGTACATATTTGTAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGCCAAACTAACAGAGAGCAAACCCAAGCCCAAACTGTGAAACATGATCATCATCAAGAAACCCTAAGATCCCACACCTTTCTTGAGGATCAAGAAACCGTCTCTTGGTTACAATACCCTCCATATGAAGACCAATTCATAACCGACGGCTTCTCATCTCATTTCTTCTCAACCGGTAATCCCCTGGAGAGACCAGCCTCAGAGATGGTTAAGCACGAGGCCGGTCCTGACCCTCCTGATCAGGCCATGCCTCCTCCTATGTTTAGGTTACCGGATTCATCATCAAGTGTCAAGGAACTAGGAAAGGAACAATACTCGGTTGTGACCGTTGGACCGAGCAGCCAATCTCATAACAATCTTGATGTCTCAGTGCGTCATGATCGGAGCAAAACTGTCAATGAAAGGCTTTACCATAACGCAGGTTCTTCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACATCAAAGAAATGGCTGGTGTGCAAAGCATTACAACAGACCGTAAGAGAAAACATATAATGGACACTGATGAATATGCATCTCAACCAGATGTATGTTTTATTTTTTAGCTCATGATATTAAGTTCTTGAAACGTGTTTTCGTACATTGCTCATATTTCTTGAAACTTTTTACAGGTAATAGGTAACAAAACGAACCAACGACCAGGATCAACGGGCAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGGTACTTCATCGGTTCGTCTAAATATAATTATTTTGTCAAACAAAAGTCTATATATAATTATGTATGATATATAGTAATTAATGTTGGTAGATTGTGTACTCGGACAAAGATAAGAGATATAAACTGTTTTGTGTTAATTAAAATAGAGGAGAAGAGATAGGATCAATGAGAGAATGAAGACTTTGCAAGAACTAATACCTCACTGCACTAAAGTAAGTTACAAACTAGAAAATGATTCGGAGATTCAAATTGAAAAACTTGTTATTAATTGGATTTGTTTTTTTTTTTGGCAGACTGATAAAGCATCAATATTGGACGAAGCCATAGATTACATGAAGTCACTTAAGTTACAACTTCAAGTTATGTGGATGGGGAATGGAATGGTTGCTGCTGCGACAGCTCCGATGATGCTCCCTGGCGTACAACCTCAGCCGTTCATCCGCCAGATGCAGAGCCCGGTACAGTTGCCTCGATTTCCGGTTATGAACAATCCCGGTATATTTTGTCAAAATCCGACACAAAACCAAGTTTTCTCCAATTGGTTTGATAGATACATTGGCGTATTCCCACAGATGCAGGCCGCGCCTCAGGTAAGGCTCATACGACGTAGACTATTTACTTGAGTGTTATTTGAGCATCAACGACGTCGTCTACTTTAGTGCTAAACGACTTATGATGATTTGACACGTTGTGGTTTGATATTATACGCAGCCGGTGGAGATGCTAAGATTTGGTTCTCAGGCGGGACAGCAAAGTCAACAACCGTCTGCGCCGACGAAGACCACCGACGGTTCTCGTTAG
CDS Sequence
- >BnaC04G0590800ZS
ATGGAACATCAAGGTTGGAATTTTGAGGAGAATTGCAACTTATCCAACAATAGGAGATCATCTTTAAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGCCAAACTAACAGAGAGCAAACCCAAGCCCAAACTGTGAAACATGATCATCATCAAGAAACCCTAAGATCCCACACCTTTCTTGAGGATCAAGAAACCGTCTCTTGGTTACAATACCCTCCATATGAAGACCAATTCATAACCGACGGCTTCTCATCTCATTTCTTCTCAACCGGTAATCCCCTGGAGAGACCAGCCTCAGAGATGGTTAAGCACGAGGCCGGTCCTGACCCTCCTGATCAGGCCATGCCTCCTCCTATGTTTAGGTTACCGGATTCATCATCAAGTGTCAAGGAACTAGGAAAGGAACAATACTCGGTTGTGACCGTTGGACCGAGCAGCCAATCTCATAACAATCTTGATGTCTCAGTGCGTCATGATCGGAGCAAAACTGTCAATGAAAGGCTTTACCATAACGCAGGTTCTTCATCAGGTGGCTCCTCTGGTTGCAGCTTTGGCAAGAACATCAAAGAAATGGCTGGTGTGCAAAGCATTACAACAGACCGTAAGAGAAAACATATAATGGACACTGATGAATATGCATCTCAACCAGATGTAATAGGTAACAAAACGAACCAACGACCAGGATCAACGGGCAGGAGTCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGAGAAGAGATAGGATCAATGAGAGAATGAAGACTTTGCAAGAACTAATACCTCACTGCACTAAAACTGATAAAGCATCAATATTGGACGAAGCCATAGATTACATGAAGTCACTTAAGTTACAACTTCAAGTTATGTGGATGGGGAATGGAATGGTTGCTGCTGCGACAGCTCCGATGATGCTCCCTGGCGTACAACCTCAGCCGTTCATCCGCCAGATGCAGAGCCCGGTACAGTTGCCTCGATTTCCGGTTATGAACAATCCCGGTATATTTTGTCAAAATCCGACACAAAACCAAGTTTTCTCCAATTGGTTTGATAGATACATTGGCGTATTCCCACAGATGCAGGCCGCGCCTCAGCCGGTGGAGATGCTAAGATTTGGTTCTCAGGCGGGACAGCAAAGTCAACAACCGTCTGCGCCGACGAAGACCACCGACGGTTCTCGTTAG
Protein Sequence
- >BnaC04G0590800ZS
MEHQGWNFEENCNLSNNRRSSLRPQDELVELLWRDGQVVLQSQTNREQTQAQTVKHDHHQETLRSHTFLEDQETVSWLQYPPYEDQFITDGFSSHFFSTGNPLERPASEMVKHEAGPDPPDQAMPPPMFRLPDSSSSVKELGKEQYSVVTVGPSSQSHNNLDVSVRHDRSKTVNERLYHNAGSSSGGSSGCSFGKNIKEMAGVQSITTDRKRKHIMDTDEYASQPDVIGNKTNQRPGSTGRSRAAEVHNLSERRRRDRINERMKTLQELIPHCTKTDKASILDEAIDYMKSLKLQLQVMWMGNGMVAAATAPMMLPGVQPQPFIRQMQSPVQLPRFPVMNNPGIFCQNPTQNQVFSNWFDRYIGVFPQMQAAPQPVEMLRFGSQAGQQSQQPSAPTKTTDGSR