Information report for BnaC04G0405400ZS
Gene Details
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Functional Annotation
- HLP1 is a member of the conserved hnRNP A/B family and contains RNA Recognition Motifs (RRM).It binds mRNA and appears to be involved in targeting alternative polyadenylation (APA). APA targets include genes involved in flowering. Loss of HLP1 function results causes late flowering under long and short day conditions. This phenotype is suppressed by loss of FLC.
Homologous
- Actinidia chinensis: CEY00_Acc03772
- Brassica oleracea: Bo4g140290
- Brassica rapa: Bra025568
- Citrullus lanatus: Cla97C10G196620
- Cucumis sativus: CsGy3G037790
- Glycine max: Glyma.19G061100, Glyma.16G070900, Glyma.05G003400
- Medicago truncatula: Medtr6g004810
- Nicotiana attenuata: A4A49_34905
- Populus trichocarpa: POPTR_001G344900v3
- Prunus persica: PRUPE_3G292100
- Solanum lycopersicum: Solyc02g093340.3
- Solanum tuberosum: PGSC0003DMG400012601
- Vitis vinifera: VIT_14s0066g00480
Gene Resources
- Pfam: PF00076 PF05172 PF12108 PF14605 PF16367
- UniProt: A0A078HEZ2
- EMBL: HG994368 , LK032374
- AlphaFoldDB: A0A078HEZ2
- OMA: PRVMESQ
- InterPro: IPR000504 , IPR012677 , IPR035979
- PANTHER: PTHR48033 , PTHR48033:SF5
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- STRING: 3708.A0A078HEZ2
Sequences
gDNA Sequence
- >BnaC04G0405400ZS
TGGACCCTTATGCAACGGAAACAGTCGTGGATGAGGAGAACCACGAAGTGAAACCATCCGAAGATGCTGAGGACGATGACGACAAATCTCAGCCTCAATCTGGTGGTGGCATCGATAGTGCAGGGTAAGTTTTTCTCCAAAAGATTCTAGATTCAACAGTAAGGGTTCGAATTGAGATAGAGAAAAAGAAATTAGCATCGTATTGTTTTCGATTCTTCTGTTACAAAAATTCGTGATAGGGAAATAGAAAAGTTTGCAACTTTATATGGATACTCTTACTGATTGGTGAAATTAGGGTTAAGTTCTTCGTTTTACCCTTAGAGAAATCTGAAATCTGGAGTGGAGAAGGATTGAGTTTAGTCCTCCTCTTATACTTAGCGAATTAGTCTACTTATACGGTGTTTTTTTTTTGGAATTTGTAGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGGTTAGCTCTTTGTGTCTGGTTGCCACTTTGTTAAGAAGAGGTTAGCTCTCTCTTTATTGTCTTCAAGTTCAATGCTTTATTCGGATTCTTTTTATCTGTTTATGCAGCTGAGTTCGTCAAGCATTTTGAGAAGTACGGAGAGATTACAGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGGTTTGGGTTTGTTACTTATGCTGATTCCTCTGTGGTCGACAAACTTATCCAGGACAATCACATTATAAACGGGAAGCAGGTTAGTATGGAGCTAACAAGCTTAAGTGTGTGTTCTTAAGTTTTGTCTTACAGTGAAATAACGTTTCCTTCTTCTTTTTTTTTTGGCTCTTCAGGTTGAGATTAAGCGGACGATACCGAGAGGATCCATGAGCTCCTCCAACGAGATCAAAACCAAGAAGATATTTGTTGGTGGAATCCCTTCAACTGTTGATGATGGTAAGAGCCCAGTCTTTTCTTGCTTATTGATTTCTCTCATATGATTTTCATTTCATGATCTATGAAGTAACTCATCTGGTGATTGGGGTTTGTGTAGATGAGTTCAAGGAGTTCTTTATGCAATTTGGAGAGCTCAAGGAACACCAGATTATGCGTGATCACGCAACTGGAAGATCGCGTGGGTTTGGGTTTGTTACATATGAAAGTGAAGACATGGTTGATCTTCTCTTGGCAAAAGGAAACAGAATCGAGCTCTCTGGGACCCAGGTAAAGGAGTAGTCTTTACAAATATTGTTGAGATTCTAAGGCTTTTGTAGCTAAACAGAACACTCACATCTCCCTCTTACATTGTTGTATTGTCTTATACAGGTTGAGATAAAGAAGGCAGAGCCGAAGAAACCAAACTCGGTAACAACCCCTTCAAGGCGGTTTGGTGACTCACGCTCTAACTTTGGCGGAGGCTATGGAGACGGTTATGGTGGAGGACCTGGCGGTGGATATGGTGGTCCAGATGGTCCTTACAAATCTGGTGGCGGCTATGGAGGTGGCCGGTCTGGTGACTATGGAGGGTACGGAGGAGAGTTTGGCGGGTATGGTGGCGGTGGATATGGTGGTGGTGTTGGACCTTATAGAGGAGGAGAGCCTCCACTTGGGTACTCTGGTCGTTATGGAGGAGGAGGCGGTGGTGGTTACAACAGAGGTGGTTACGGCATGGGAGGTGGAGGAGGAGGAGGGTACGGTGGTGGACCTGGAGATATGTATGGTGGGCCGTACGGTGAGCCAGCAGGTGGTTATGGTGGACCAAGTGGGAGTTATGGAAGTGGATACGGTAGTGGTGGGTATGGTGGAGGAGGCTATAGAGGCAGCAGTGGTGGGTATGACATGGGTGGTACTGGAGTTGGAGGCGGAGGAGGTTACCCTGGTGGTGGCGGAGGAAGTGGAGGAGGCTCGTTCTATGGTGGTGCAGGAGGAGGAGGAAGTAGAGGAGGATATGGAGGAGGTTCGGGACGGTACCATCCTTATGGAAGGTAG
CDS Sequence
- >BnaC04G0405400ZS
ATGGACCCTTATGCAACGGAAACAGTCGTGGATGAGGAGAACCACGAAGTGAAACCATCCGAAGATGCTGAGGACGATGACGACAAATCTCAGCCTCAATCTGGTGGTGGCATCGATAGTGCAGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAGTTCGTCAAGCATTTTGAGAAGTACGGAGAGATTACAGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGGTTTGGGTTTGTTACTTATGCTGATTCCTCTGTGGTCGACAAACTTATCCAGGACAATCACATTATAAACGGGAAGCAGGTTGAGATTAAGCGGACGATACCGAGAGGATCCATGAGCTCCTCCAACGAGATCAAAACCAAGAAGATATTTGTTGGTGGAATCCCTTCAACTGTTGATGATGATGAGTTCAAGGAGTTCTTTATGCAATTTGGAGAGCTCAAGGAACACCAGATTATGCGTGATCACGCAACTGGAAGATCGCGTGGGTTTGGGTTTGTTACATATGAAAGTGAAGACATGGTTGATCTTCTCTTGGCAAAAGGAAACAGAATCGAGCTCTCTGGGACCCAGGTTGAGATAAAGAAGGCAGAGCCGAAGAAACCAAACTCGGTAACAACCCCTTCAAGGCGGTTTGGTGACTCACGCTCTAACTTTGGCGGAGGCTATGGAGACGGTTATGGTGGAGGACCTGGCGGTGGATATGGTGGTCCAGATGGTCCTTACAAATCTGGTGGCGGCTATGGAGGTGGCCGGTCTGGTGACTATGGAGGGTACGGAGGAGAGTTTGGCGGGTATGGTGGCGGTGGATATGGTGGTGGTGTTGGACCTTATAGAGGAGGAGAGCCTCCACTTGGGTACTCTGGTCGTTATGGAGGAGGAGGCGGTGGTGGTTACAACAGAGGTGGTTACGGCATGGGAGGTGGAGGAGGAGGAGGGTACGGTGGTGGACCTGGAGATATGTATGGTGGGCCGTACGGTGAGCCAGCAGGTGGTTATGGTGGACCAAGTGGGAGTTATGGAAGTGGATACGGTAGTGGTGGGTATGGTGGAGGAGGCTATAGAGGCAGCAGTGGTGGGTATGACATGGGTGGTACTGGAGTTGGAGGCGGAGGAGGTTACCCTGGTGGTGGCGGAGGAAGTGGAGGAGGCTCGTTCTATGGTGGTGCAGGAGGAGGAGGAAGTAGAGGAGGATATGGAGGAGGTTCGGGACGGTACCATCCTTATGGAAGGTAG
Protein Sequence
- >BnaC04G0405400ZS
MDPYATETVVDEENHEVKPSEDAEDDDDKSQPQSGGGIDSAGKIFVGGLARETTSAEFVKHFEKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKLIQDNHIINGKQVEIKRTIPRGSMSSSNEIKTKKIFVGGIPSTVDDDEFKEFFMQFGELKEHQIMRDHATGRSRGFGFVTYESEDMVDLLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSRRFGDSRSNFGGGYGDGYGGGPGGGYGGPDGPYKSGGGYGGGRSGDYGGYGGEFGGYGGGGYGGGVGPYRGGEPPLGYSGRYGGGGGGGYNRGGYGMGGGGGGGYGGGPGDMYGGPYGEPAGGYGGPSGSYGSGYGSGGYGGGGYRGSSGGYDMGGTGVGGGGGYPGGGGGSGGGSFYGGAGGGGSRGGYGGGSGRYHPYGR