Information report for BnaC01G0089200ZS
Gene Details
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Functional Annotation
- The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.
Homologous
- Actinidia chinensis: CEY00_Acc09828, CEY00_Acc00926
- Brassica oleracea: Bo1g014920, Bo3g175970
- Brassica rapa: Bra011139
- Citrullus lanatus: Cla97C03G065580
- Cucumis melo: MELO3C015499
- Cucumis sativus: CsGy1G027590
- Glycine max: Glyma.17G052100
- Juglans regia: Jr01_26010
- Manihot esculenta: MANES_16G098700
- Medicago truncatula: Medtr4g125710
- Vitis vinifera: VIT_11s0016g01730
Gene Resources
- Pfam: PF12894 PF00400
- UniProt: A0A0D3A3B9
- RefSeq: XP_013596482.1
- AlphaFoldDB: A0A0D3A3B9
- KEGG: boe:106304623
- OMA: LDSSMCL
- InterPro: IPR001680 , IPR015943 , IPR019775 , IPR020472 , IPR036322 , IPR051510
- PANTHER: PTHR44090 , PTHR44090:SF1
- SUPFAM: SSF50978
- PROSITE: PS00678 , PS50082 , PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A0D3A3B9
- SMR: A0A0D3A3B9
- CDD: cd00200
- eggNOG: KOG4155
- STRING: 109376.A0A0D3A3B9
- HOGENOM: CLU_000288_57_11_1
Sequences
gDNA Sequence
- >BnaC01G0089200ZS
CATGAGTAATCATAGAGCGATACACTCTTGTCGTCAGAGACACTAGCGAGACGACCAGCACGGACACCAGTTCCACCAGGTGGTCTAAACGCTACAGACCAAACCTGGTCATTATGGTTGCTCATTGTCTGAATAGCCGCTCTCATCTTAAGATCCCACAGCCTCACAGTCCTATCACTCGACCCTGTTGCTATAGCTCCACCGTCAGGGCTAGCATCAACGCTCAGCACCCAGCTCGTGTGCCCCGACATGGACCCCACAAGCGTTTTCCCTTCTGCGTCGTGCATGTTCACATGCCCATCATCTGATCCGGAGAAGAGGACTCTCGGGTCTACAGGGGAGAACACAAGGGACCTTACAGGCATGTTGTGGCCTTCCAGCTGGTGAAGAAGCTTAGAGCGATCAACATCAAAGACGCAGATCGTGCCATCCATTGAACCACAAGCAAGGCGTTTCCCGTTGGGAGACCAAGCAACGGAGAGAACGAACTTCTTGCTGCTGGTTTTATCAGAAGGCTTTGGTGCTTCAGGACGTGGGATTGAGAGAGTTGAGATTAGTCTCCAGCTCGCAGTGTCCCAAAGCTTGACCGAGGCGCTACTTCCACCAGCAACAGCAAGGATTGTACCCTTGTAACATGTTAAAATGATTAAGTTAGCACATAGCAGTAGAGCCTACTGCCTTGTTAGTTACTGTCTGATTTGAGCAAATCTGAAGTTGATCTAAAGTAATTTCAGACAACAAGTCAAAACACAATCAAGTTACTGTCTAATTTGAGTACTCAACAATTCCAAATAAACTCTAAGCATTATTAAAAACCTTAATTACCTTAGGTTCAAATTGCATACCCCAAACCTCGGAAGGAGGAGCTTCGAGAACAGCGATGGTGGCATTAGTGTCAACATCGAAGACACGGACGAAGCTATCGAGTGAAGAGGAAGCTGCGATGATTCCGGAAGGATGCGCCGCCACAGCTGCTACTCCCAAGGAGTGTCCTGTGTTAGTCCTCACTAGATCCAGCTCGTCCGCTCTCCATAGCTTCACCGTCTCGTCTAGAGATCCGGTAAGAAGCAACGCCGGTCGTTCTTCCGTCGCCGGAACCCATGTCGCCGCCCAAACGGAATCTTCGTGCGCGTTCTCGATCGATTTCAGGCCTGCGAGTTTCAT
CDS Sequence
- >BnaC01G0089200ZS
ATGAAACTCGCAGGCCTGAAATCGATCGAGAACGCGCACGAAGATTCCGTTTGGGCGGCGACATGGGTTCCGGCGACGGAAGAACGACCGGCGTTGCTTCTTACCGGATCTCTAGACGAGACGGTGAAGCTATGGAGAGCGGACGAGCTGGATCTAGTGAGGACTAACACAGGACACTCCTTGGGAGTAGCAGCTGTGGCGGCGCATCCTTCCGGAATCATCGCAGCTTCCTCTTCACTCGATAGCTTCGTCCGTGTCTTCGATGTTGACACTAATGCCACCATCGCTGTTCTCGAAGCTCCTCCTTCCGAGGTTTGGGGTATGCAATTTGAACCTAAGGGTACAATCCTTGCTGTTGCTGGTGGAAGTAGCGCCTCGGTCAAGCTTTGGGACACTGCGAGCTGGAGACTAATCTCAACTCTCTCAATCCCACGTCCTGAAGCACCAAAGCCTTCTGATAAAACCAGCAGCAAGAAGTTCGTTCTCTCCGTTGCTTGGTCTCCCAACGGGAAACGCCTTGCTTGTGGTTCAATGGATGGCACGATCTGCGTCTTTGATGTTGATCGCTCTAAGCTTCTTCACCAGCTGGAAGGCCACAACATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGACCCGAGAGTCCTCTTCTCCGGATCAGATGATGGGCATGTGAACATGCACGACGCAGAAGGGAAAACGCTTGTGGGGTCCATGTCGGGGCACACGAGCTGGGTGCTGAGCGTTGATGCTAGCCCTGACGGTGGAGCTATAGCAACAGGGTCGAGTGATAGGACTGTGAGGCTGTGGGATCTTAAGATGAGAGCGGCTATTCAGACAATGAGCAACCATAATGACCAGGTTTGGTCTGTAGCGTTTAGACCACCTGGTGGAACTGGTGTCCGTGCTGGTCGTCTCGCTAGTGTCTCTGACGACAAGAGTGTATCGCTCTATGATTACTCATGA
Protein Sequence
- >BnaC01G0089200ZS
MKLAGLKSIENAHEDSVWAATWVPATEERPALLLTGSLDETVKLWRADELDLVRTNTGHSLGVAAVAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPEAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLVGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTGVRAGRLASVSDDKSVSLYDYS