Information report for BnaA04G0118400ZS
Gene Details
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Functional Annotation
- HLP1 is a member of the conserved hnRNP A/B family and contains RNA Recognition Motifs (RRM).It binds mRNA and appears to be involved in targeting alternative polyadenylation (APA). APA targets include genes involved in flowering. Loss of HLP1 function results causes late flowering under long and short day conditions. This phenotype is suppressed by loss of FLC.
Homologous
- Actinidia chinensis: CEY00_Acc03772
- Brassica oleracea: Bo4g140290
- Brassica rapa: Bra025568
- Citrullus lanatus: Cla97C10G196620
- Cucumis sativus: CsGy3G037790
- Glycine max: Glyma.19G061100, Glyma.16G070900, Glyma.05G003400
- Medicago truncatula: Medtr6g004810
- Nicotiana attenuata: A4A49_34905
- Populus trichocarpa: POPTR_001G344900v3
- Prunus persica: PRUPE_3G292100
- Solanum lycopersicum: Solyc02g093340.3
- Solanum tuberosum: PGSC0003DMG400012601
- Vitis vinifera: VIT_14s0066g00480
Sequences
gDNA Sequence
- >BnaA04G0118400ZS
TGGACCCTTATGCAACGGAAACAGTCGTGGATGAGGAGAACCACGAAGTGAAACCATCCGAAGATGTTGAGGACGATGACGACAAATCTCAGCCTCAATCCGGTGGTGGCATCGATAGCGCTGGGTAAGTTTTCTCAAAATATTCTAGATTCAATAATTAGCGTTCGAATTGAGATAGAGGAGAAGAAAATAGCATCGTATTGTTTTCGATTCTTCTGTTACAAAAATTCGTGATAGGGAAATAGAAAAGTTTTCAACTTTATATGGATACTCTTACTGATTGGTGAAAGCCTAGAGAAATCTGGAGTGGAAAAGGATTACTTATACTTAGTGAGTTAGTCTACTTATACGGTGTTTTTTTTGGAATTTGTAGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGGTTAGCTCTTTGTGTCTGGTTGCCACTTTGTTAAGAAGAGGTTAGCTCTCTCGTTATTGGGTTAAAGTTCAATACTTTATTCGGATTCTTTTTTATCTGTTTATGCAGCTGAGTTCGTCAAGCATTTTGAGAAGTATGGAGAGATTACAGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGGTTTGGGTTTGTTACTTATGCTGATTCCTCTGTGGTCGATAAACTTATTCAGGACAATCACATTATAAACGGGAAGCAGGTTAGTATTTAGCTAACAAGCTTAAGTGTGTGTTCTTAAGTTGTGTCTTACAGTGAAATAACGTTTGCTTCTTCTTTTTTGGCTCTTCAGGTTGAGATTAAGCGGACGATACCGAGAGGATCCATGAGCTCCTCCAACGAGATCAAAACCAAGAAGATATTTGTTGGGGGAATTCCTTCAACTGTTGATGATGGTAGGACACTTGGCTCGTTTATCATAATATTGTCATTTCATGATCATGTCTATCTGTGAAGTAACTCATCTGGTGATTGGGGTTTGTGTAGATGAGTTCAAGGAGTTCTTTATGCAATTTGGGGAGCTGAAGGAACACCAGATTATGCGTGATCACGCAACTGGAAGATCACGTGGGTTCGGGTTTGTTACATATGAAAGTGAAGAGATGGTTGATCTTCTCTTGGCAAAAGGGAACAGAATTGAGCTCTCTGGGACTCAGGTAACCAAATATTGTTGAGATTCTAAGGCTTTTGTAGCTAAACAGAACACTTACATCTCCCTCTTACATTGTTGTATTGTCTTATATAGGTTGAGATAAAGAAGGCAGAGCCAAAGAAACCAAACTCGGTAACAACCCCATCAAGGCGGTTTGGTGACTCATGCTCTAACTTTGGCGGAGGCTATGGAGACGGTTATGGTGGAGGACCCGGCGGTGGATATGGTGGTCCAGATGGTCCTTACAAATCTGGTGGCGGCTATGGAGGTGGCCGGTCTGGTGGCTATGGAGGGTACGGAGGAGAGTTTGGCGGGTATGGCGGCGGTGGATATGGTGGTGGTGTTGGACCATATAGAGGAGGAGAGCCTCCACTTGGATACTCTGGTCGTTATGGAGGAGGAGGCGGTGGTGGTTACAACAGAGGTGGTTACGGCATGGGAGGTGGAGGAGGAGGAGGGTACGGTGGTGGACCTGGAGATATGTATGGTGGGCCGTATGGTGAGCCAGCAGGTGGTTATGGTGGACCAAGTGGGAGTTATGGAAGTGGATACGGTAGTGGTGGGTATGGTGGAGGAGGCTATAGAGGCAGCAGTGGTGGGTATGAGATGGGTGGTACTGGAGTTGGAGGCGGAGGAGGCTACCCTGGTGGTGGCGGCGGAGCAAGCGGAGGAGGCTCGTTCTATGGTGGTGGAGGAGGAGGAGGGGGAAGTAGAGGAGGATATGGAGGAGGTTCGGGACGGTACCATCCTTACGGAAGGTAGAAAGTTCCATAAAGCTTTCAATCTTCTTCTTGTCTTGTTTGTTTCTGTCATGTATGGTTATCAAGAATGATAGCTAGAGAGTAATACTGTATGGTGAGAGAGGAGGCTTATAGGGTTTGATTCCCAGAGATTAGTTTAATACATTTATAGATAATCGCCTGAATATTCTTTTTTTGCTTAGAACACAAGTCTTTGTGGGCAACTAGATTTAGCTTTGTATCATGGCTTTCCAGTTTTGATTCCAACCTTACCAGTTAGACGCTTGTTTGTATTGTTGCATATTTTTATCATGAACCTTCCAAGTCAGTCCGAAGGTTTGATTGTCGTCTACTACTCCCTAAGTGAGAACCACAAATTGACCGAAAAATATCTGCCTCGATTGTTTGATTCTTCTCTTTTTTCGTGTTCCATTTTCGTGATTCAGGCAAAACTTAAAAGTTCTTTTCCGCCGGAAATTTCACCAAGGCGATCTCTTTTCATCATTGTTTTGACTGCTGCCCCTCTATCGTTCCCTAATCTCTTTTTATATTTTCTGGGTCTGAGAATCCGACATCTGGAGATGGCAACACTTGCATCCAACATTGTCTGCATCGGAAAAGTAGCGATTTATAGAGCGAATTTCATGGCAAATTCAGCTGTTGTTTATCTTTCTGAACGTTAGGGCTTTTGGAAATTGCAGGTAGAGAGGAGGAGGAGGTTGAAGGTAGATTGCAGAAAGAAAGAGAAAGGAAGAGATCAAAGCATTTCTCCTTATAAAGTCATTGAAATTACTCCTCCCCCCAAGTCTCTTGGCGTTCGCTGCCTTCCTCATGTCAGTCCCAAATCCCTTCCTCTTCTTTTCCCTTTCACTTCATTTTCTCGAGAAAATTCCAGAAGAAAACTAAACACCCTTGATCGACATTCTATGAATTTCTTCGTCAAATTGATTTTGGTTTCAACTAGCTGATTTTAATGGGAAAAAAAGCTGTGATTTTTGCAGAATCTTCAGTGCGGAGAGAACGTGATGATCGAAGGTCAAACGTACACAATCTCCGCCGTGACTCATCGGTATCAGCTCCGCAAAGGTAAGTACGAGCCTAGTGAGAGGCGGCTTGATGTTCTCTCCGCCGCTAGATATGTCTTAAACCTTTATTTCGACAATCTGCTCCAAAATTCTTGA
CDS Sequence
- >BnaA04G0118400ZS
ATGGACCCTTATGCAACGGAAACAGTCGTGGATGAGGAGAACCACGAAGTGAAACCATCCGAAGATGTTGAGGACGATGACGACAAATCTCAGCCTCAATCCGGTGGTGGCATCGATAGCGCTGGAAAGATATTTGTTGGAGGTTTAGCCAGGGAGACAACTTCAGCTGAGTTCGTCAAGCATTTTGAGAAGTATGGAGAGATTACAGATTCTGTGATTATGAAGGATAGGAAAACTGGACAGCCCCGAGGGTTTGGGTTTGTTACTTATGCTGATTCCTCTGTGGTCGATAAACTTATTCAGGACAATCACATTATAAACGGGAAGCAGGTTGAGATTAAGCGGACGATACCGAGAGGATCCATGAGCTCCTCCAACGAGATCAAAACCAAGAAGATATTTGTTGGGGGAATTCCTTCAACTGTTGATGATGATGAGTTCAAGGAGTTCTTTATGCAATTTGGGGAGCTGAAGGAACACCAGATTATGCGTGATCACGCAACTGGAAGATCACGTGGGTTCGGGTTTGTTACATATGAAAGTGAAGAGATGGTTGATCTTCTCTTGGCAAAAGGGAACAGAATTGAGCTCTCTGGGACTCAGGTTGAGATAAAGAAGGCAGAGCCAAAGAAACCAAACTCGGTAACAACCCCATCAAGGCGGTTTGGTGACTCATGCTCTAACTTTGGCGGAGGCTATGGAGACGGTTATGGTGGAGGACCCGGCGGTGGATATGGTGGTCCAGATGGTCCTTACAAATCTGGTGGCGGCTATGGAGGTGGCCGGTCTGGTGGCTATGGAGGGTACGGAGGAGAGTTTGGCGGGTATGGCGGCGGTGGATATGGTGGTGGTGTTGGACCATATAGAGGAGGAGAGCCTCCACTTGGATACTCTGGTCGTTATGGAGGAGGAGGCGGTGGTGGTTACAACAGAGGTGGTTACGGCATGGGAGGTGGAGGAGGAGGAGGGTACGGTGGTGGACCTGGAGATATGTATGGTGGGCCGTATGGTGAGCCAGCAGGTGGTTATGGTGGACCAAGTGGGAGTTATGGAAGTGGATACGGTAGTGGTGGGTATGGTGGAGGAGGCTATAGAGGCAGCAGTGGTGGGTATGAGATGGGTGGTACTGGAGTTGGAGGCGGAGGAGGCTACCCTGGTGGTGGCGGCGGAGCAAGCGGAGGAGGCTCGTTCTATGGTGGTGGAGGAGGAGGAGGGGGAAGTAGAGGAGGATATGGAGGAGGTTCGGGACGGTACCATCCTTACGGAAGAATCCGACATCTGGAGATGGCAACACTTGCATCCAACATTGTCTGCATCGGAAAAGTAGAGAGGAGGAGGAGGTTGAAGGTAGATTGCAGAAAGAAAGAGAAAGGAAGAGATCAAAGCATTTCTCCTTATAAAGTCATTGAAATTACTCCTCCCCCCAAGTCTCTTGGCGTTCGCTGCCTTCCTCATAATCTTCAGTGCGGAGAGAACGTGATGATCGAAGGTCAAACGTACACAATCTCCGCCGTGACTCATCGGTATCAGCTCCGCAAAGGTAAGTACGAGCCTAGTGAGAGGCGGCTTGATGTTCTCTCCGCCGCTAGATATGTCTTAAACCTTTATTTCGACAATCTGCTCCAAAATTCTTGA
Protein Sequence
- >BnaA04G0118400ZS
MDPYATETVVDEENHEVKPSEDVEDDDDKSQPQSGGGIDSAGKIFVGGLARETTSAEFVKHFEKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKLIQDNHIINGKQVEIKRTIPRGSMSSSNEIKTKKIFVGGIPSTVDDDEFKEFFMQFGELKEHQIMRDHATGRSRGFGFVTYESEEMVDLLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSRRFGDSCSNFGGGYGDGYGGGPGGGYGGPDGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGGEPPLGYSGRYGGGGGGGYNRGGYGMGGGGGGGYGGGPGDMYGGPYGEPAGGYGGPSGSYGSGYGSGGYGGGGYRGSSGGYEMGGTGVGGGGGYPGGGGGASGGGSFYGGGGGGGGSRGGYGGGSGRYHPYGRIRHLEMATLASNIVCIGKVERRRRLKVDCRKKEKGRDQSISPYKVIEITPPPKSLGVRCLPHNLQCGENVMIEGQTYTISAVTHRYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS