Information report for BnaA04G0003900ZS
Gene Details
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Functional Annotation
- Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. Mutations in TIR1 block auxin stimulation of flavonoid synthesis.
Homologous
- Arabidopsis thaliana — AT3G62980
Gene Resources
- Pfam: PF18511 PF18791
- UniProt: A0A817AD69
- EMBL: HG994358
- AlphaFoldDB: A0A817AD69
- InterPro: IPR001810 , IPR006553 , IPR032675 , IPR036047 , IPR041101 , IPR041567
- PANTHER: PTHR16134 , PTHR16134:SF66
- SUPFAM: SSF52047 , SSF81383
- Gene3D: 1.20.1280.50 , 3.80.10.10
- OrthoDB: A0A817AD69
- SMR: A0A817AD69
- CDD: cd22159
Sequences
gDNA Sequence
- >BnaA04G0003900ZS
CTTTTTTAGCTCGACCTTCCCTTCCCTATCCTTCTTCCTTCTCTTTCATCTTCCTCCCAACCTTTCTTTCTTTCTGCATCTTCATCGCTCCGTTAATGGCGCCTCAGATCTATCCCTCCCATATATAAACTCCTTTCCCAATTTTTGTTCTTCACTATCAATCGAAAGATCTCGAGTTTTTTTTTTTTTTTCTATATAATGTATAAGCGAGTGTCGTTATCGTTTCCAGAAGAAGTCCTCGAGCACGTATTCTCGTTTATACACGTGGACAAGGACAGGAACTCGGTGTCCCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAAAGTCTTCGTCGGGAACTGCTACGCGGTGAGCCCCGGGAGGGTGATAAGGAGGTTCCCGAAGCTGAGATCCGTGGAGCTGAAGGGGAAGCCGCACTTCGCGGACTTCAATTTGGTGCCGGAGGGGTGGGGAGGGTACGTGTACCCGTGGATAGAGGCGATGTCGACGTCGTACACGTGGCTGGAGGAGATAAGGCTGAAGAGGATGGTGGTGAGCGACGAGTGCTTGGAGCTCATCGCTAAGTCCTTTAAGAATTTTAAGGTTCTCGTGCTTTCTTCCTGCGAAGGCTTCTCCACCGATGGCCTCGCTGCTATCGCCGCCTCTTGCAGGTTCTATTGTCTTAGGCAGTTAGTTATAGAGGCTATAGTTAGTAACAATTTGTTTAATTTGATATGTAAATAAACTTTTTGTTGTTGACGGAAGCATTTATCTTTATTCCTGGGTTATTCGCTCTCACTGAATCTACTGAAGTGGTGGGAGAGATCTAGCCATTTTGGCCATTCCTCCCTTTTCTTTTACCTTTTTTGTTTTCTCTTTTATTTTTACTACCTTACTTAAGCTTTTTATTCCCTTACTTCTGCTTGTTTTACCATCTCGTACAATGTCTCTCTAACTAAAAGTAGTAATATACCATTTGAAGATAAATTTTTAGAAGTATTTGCATCAATATGCAAGTTTGAAACAGTTAGTTTCCTTTATAATTGGTAAACGTTTTAGTGGTTATTGATTCTTAATTTTTGGGCCTTTTTTTTCTTTTTGCTTTCCATGTTGATGTGTGCAAAATGGGTTAATATGATTACTAATTGTGTGATTCTTATGCAGGAATCTGAGAGAGCTTGATTTGCGTGAGAGTGATGTTGACGATGTTAGCGGCCACTGGCTTAGCCATTTCCCAGACACATACACTTCTTTGGTATCTCTCAATATCTCTTGCTTATCCTCTGAGCTCAGTTTCTCTGCTCTCGAAAGGCTGGTGACTAGGTGTCCCTCTCTCAAGTCTCTCAAGCTTAACCGAGCTGTTCCTCTCGAAAAACTGGCTATTTTACTTCAAAGAGCGCCTCAGCTTGAGGAATTTGGTACCGGTGGCTACACTGCTGATGTGCGTCCAGATGTGTTCTCTGATTTGTCCGTGGCTCTCTCTGGCTGCAAGAAGTTGAAGTGCTTATCTGGGTTTTGGGATGCTGCTCCTGCTTATCTTCCAGCTGTTTATTCCGTTTGCTGTCGGGTTACTACTTTGAACCTGAGTTATGCGACGGTTCAGAGTTATGATCTTGTCAAGCTTCTTAGCCAATGTCCTAAATTGCAGCGTCTCTGGGTGAGTTTAGTTTGACATTATGAGCAACATAATTTACGTAGACACCGTGCCTTTTTATTTAATTGGTGGTATGACTTATTGACATAGGTGTTGGATTACATCGAGGATACTGGTCTTGAAGTGCTTGCTTCAACCTGCAAGGACCTCCGCGAGCTGAGAGTGTTTCCGTCTGACCCTTTTGTCATGGAGGCAAACGTTGCATTGACGGAACAAGGGCTTGTCTCGGTCTCTATGGGCTGTCCAAAACTCGAGTCGGTTCTCTACTTCTGCCGTCAAATGACCAATGATGCGTTGGTAACCATTGCTAGGAACCGTCCCAACATGACCCGCTTCCGTTTGTGCATCATTGAGCCGAAAGCCCCTGACCATATGACTCTAGAGCCACTGGACGTGGGATTTGGAGCCATAGTTGAGCACTGCAAAAACCTCCGGCGGCTCTCCCTGTCAGGGCTCTTGACCGACAAGGTTTTCGAATACATTGGGACGTATGCAAAGAAGATGGAGATGCTGTCAGTGGCGTTTGCAGGAGAGAGTGACTTGGGGATGCATCATGTGTTGTCAGGGTGCGATAGTTTGAGGAAGCTAGAGATAAGGGACTGCCCGTTTGGAGACAAGGCGCTATTGGCCAATGCTTCGAAGCTGGAGACAATGCGATCTCTTTGGATGTCTTCTTGCTCGGTGAGTTTTGGAGCCTGCAAGTTATTAGGACAGAAGATGCCAAAGCTCAATGTGGAAGTCATCGATGAAAGGGGTCCGCCGGACTCGAGACCGGAGAGCTGCCCTGTTGAGAGAGTGTTCATATACCGAACAGTGGCGGGTCCTCGGTTTGACATGCCTGGCTTCGTCTGGAACATGGACCAACAACACTCAACCATGAGGGTTTGCCAGGGAAATGGTCACTACTAACAAATAAACGAGGTACAGTTTTTCATCAATCCTTGTTCATCGTCGCCCATATTCTAATTGTTCCAGTTTAGGAACACGAGAGAGAGAGAGAGAGAGAGAGCTCTCCATTAATTTAATCCTGAGCTGCTTCACATGACTACCAAGCTAATGAGCAATGAATAAGTGAAGAGAGAGGGAGGACATAGAGAGAAAGAGATCCGAGAGACCTTTGTTGTATGTTTGTTTGTCTTACTTACTGAGAGATTCTGGTGGGGTATTATTAGTTTTGTTCAGAGGACGATGAGAGATTTTTTAAGAGACAATTGTCAAACATGTAACTGTACTATTTGTTTGGACTCATGTTTTTTTAATCCTTTTCAATATGCT
CDS Sequence
- >BnaA04G0003900ZS
ATGTATAAGCGAGTGTCGTTATCGTTTCCAGAAGAAGTCCTCGAGCACGTATTCTCGTTTATACACGTGGACAAGGACAGGAACTCGGTGTCCCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAAAGTCTTCGTCGGGAACTGCTACGCGGTGAGCCCCGGGAGGGTGATAAGGAGGTTCCCGAAGCTGAGATCCGTGGAGCTGAAGGGGAAGCCGCACTTCGCGGACTTCAATTTGGTGCCGGAGGGGTGGGGAGGGTACGTGTACCCGTGGATAGAGGCGATGTCGACGTCGTACACGTGGCTGGAGGAGATAAGGCTGAAGAGGATGGTGGTGAGCGACGAGTGCTTGGAGCTCATCGCTAAGTCCTTTAAGAATTTTAAGGTTCTCGTGCTTTCTTCCTGCGAAGGCTTCTCCACCGATGGCCTCGCTGCTATCGCCGCCTCTTGCAGGAATCTGAGAGAGCTTGATTTGCGTGAGAGTGATGTTGACGATGTTAGCGGCCACTGGCTTAGCCATTTCCCAGACACATACACTTCTTTGGTATCTCTCAATATCTCTTGCTTATCCTCTGAGCTCAGTTTCTCTGCTCTCGAAAGGCTGGTGACTAGGTGTCCCTCTCTCAAGTCTCTCAAGCTTAACCGAGCTGTTCCTCTCGAAAAACTGGCTATTTTACTTCAAAGAGCGCCTCAGCTTGAGGAATTTGGTACCGGTGGCTACACTGCTGATGTGCGTCCAGATGTGTTCTCTGATTTGTCCGTGGCTCTCTCTGGCTGCAAGAAGTTGAAGTGCTTATCTGGGTTTTGGGATGCTGCTCCTGCTTATCTTCCAGCTGTTTATTCCGTTTGCTGTCGGGTTACTACTTTGAACCTGAGTTATGCGACGGTTCAGAGTTATGATCTTGTCAAGCTTCTTAGCCAATGTCCTAAATTGCAGCGTCTCTGGGTGTTGGATTACATCGAGGATACTGGTCTTGAAGTGCTTGCTTCAACCTGCAAGGACCTCCGCGAGCTGAGAGTGTTTCCGTCTGACCCTTTTGTCATGGAGGCAAACGTTGCATTGACGGAACAAGGGCTTGTCTCGGTCTCTATGGGCTGTCCAAAACTCGAGTCGGTTCTCTACTTCTGCCGTCAAATGACCAATGATGCGTTGGTAACCATTGCTAGGAACCGTCCCAACATGACCCGCTTCCGTTTGTGCATCATTGAGCCGAAAGCCCCTGACCATATGACTCTAGAGCCACTGGACGTGGGATTTGGAGCCATAGTTGAGCACTGCAAAAACCTCCGGCGGCTCTCCCTGTCAGGGCTCTTGACCGACAAGGTTTTCGAATACATTGGGACGTATGCAAAGAAGATGGAGATGCTGTCAGTGGCGTTTGCAGGAGAGAGTGACTTGGGGATGCATCATGTGTTGTCAGGGTGCGATAGTTTGAGGAAGCTAGAGATAAGGGACTGCCCGTTTGGAGACAAGGCGCTATTGGCCAATGCTTCGAAGCTGGAGACAATGCGATCTCTTTGGATGTCTTCTTGCTCGGTGAGTTTTGGAGCCTGCAAGTTATTAGGACAGAAGATGCCAAAGCTCAATGTGGAAGTCATCGATGAAAGGGGTCCGCCGGACTCGAGACCGGAGAGCTGCCCTGTTGAGAGAGTGTTCATATACCGAACAGTGGCGGGTCCTCGGTTTGACATGCCTGGCTTCGTCTGGAACATGGACCAACAACACTCAACCATGAGGGTTTGCCAGGGAAATGGTCACTACTAA
Protein Sequence
- >BnaA04G0003900ZS
MYKRVSLSFPEEVLEHVFSFIHVDKDRNSVSLVCKSWYEIERWCRRKVFVGNCYAVSPGRVIRRFPKLRSVELKGKPHFADFNLVPEGWGGYVYPWIEAMSTSYTWLEEIRLKRMVVSDECLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAASCRNLRELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLSSELSFSALERLVTRCPSLKSLKLNRAVPLEKLAILLQRAPQLEEFGTGGYTADVRPDVFSDLSVALSGCKKLKCLSGFWDAAPAYLPAVYSVCCRVTTLNLSYATVQSYDLVKLLSQCPKLQRLWVLDYIEDTGLEVLASTCKDLRELRVFPSDPFVMEANVALTEQGLVSVSMGCPKLESVLYFCRQMTNDALVTIARNRPNMTRFRLCIIEPKAPDHMTLEPLDVGFGAIVEHCKNLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGESDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQHSTMRVCQGNGHY