Information report for BnaA03G0057600ZS
Gene Details
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Functional Annotation
- CHC1 is predicted to encode a protein that belongs to the chromodomain remodeling complex. Two RNAi knock-down lines have a dwarf phenotype and reduced rates of Agrobacterium-mediated transformation. The low rate of root-mediated transformation rate may result from altered root morphology or reduced root growth rates.
Homologous
- Arabidopsis thaliana — AT5G14170
Gene Resources
- Pfam: PF02201
Sequences
gDNA Sequence
- >BnaA03G0057600ZS
TCAGAATATAGATAAGAATTGACTAAAGTCAAAGCTACAAATTAAAGCTAGATCATAAGTACTAATGTTTCATCATACAAAAGATTACAATACACTACTACTTTCCTTTCAAACCAGATTGATCTTGTTTCATCAGACAAAAGATTACAATACACTACTACTTTCCTTTTAAAGCAGTTTGATCTTCAACACTTCTTCTTTTAAAAGAGCTCAAACAGCTGAAGAGACTTCTACCCTATGGTACCCAGCAAGTAAACTCACTAGCTCCCTGGCCCCTAGTTCCCCCTTGCTGGCCTCCGGTTCAAGTAACGTATCACTGCATCTTCGACCCTGCAACATTTCATAATTCAGAAACGTAACAACAATGAACTCTAGTACACATATAACTCAAGTGAATTTAAGATCCTAGAAACCAGAGTGAGCAATGAGCTTACCAAGGTTGGTTGAAAAAGTCTGATCCACGCTCTCTCTCAGCATTTCGACTAGCTTCTCCCGCTACAACCTTCAGATCCTTGCTCTGCGATTCCATCAGCGCGTTTACGAATTCAGCTGGTGATTGGCTGAACCCCAAGAAAAATGCTCGTCTCCTCCTATGCTCATGGATCTTCCTTATGGCTGCACATATCGCTTCATCACAAGCCTCAATCTCTTTATTCTTCTCTGCGTTGGCCAACAAGTTGCTCAGATCCCTTTGGATAGTGACAGGTACATCCACTAGGACATCGTAACACGCTGATACGGCCGGGCTACTTCCCGACAGCTTGATCTTGTGTTCTAAGTGAATCGGTGGTGGAGGTGACAAGTGATGAGATAACTTCTGAGAGACCATTGTGAACTTCAACTTCTGTTCCCCAAACACTTTCTGAAGCGCAGCGTCACAGTTGAAGAAAGAAGGGTCGTTTGGGCTCTGCAGTTTCCTCGCCTTGACGTAGTGCCAAATTGCAGCGATGATTCTTGGCCTGGTTTCAACCTCAATCCCAAGAACATCCATCAACGCAGTAGAGAGCTTGAACTTCTCAGGGACGTAGTTCATCTCCAAACGAATAGTAGCTGCAAACTCCTGATTCCCTTTCCTCTTTATCTCAAACCCTTCCTGAGGAGCAGGTGAACGAGAGTTCTCCCATGTGATCAACGGGTTCTCAGGGTACAGCCTCTGATCAAGGCTAACTTGAACCTTCTTGAAGAAAGACGAGAACTTGGGATGCAATGGGTTAGTAGTCTCCGGATCCACCCCATCTTCCAGGATCCTACCAACAATCTTAAGAGTCCATGTTGCAGGGTCAGCGTTTGGATTATTGTTTTGGTTAGCAAACGTGTTGAACACATAGATCCTAAGCGTCTTCTGTACGCAAGGAGGGTTCTTGAGAGCTTCCTGGATGTCAACCTTCTTTCTACTCAACGCAGCATCAACACGAGACTCAAACTCAAGAAGCTGCGTGTATAACTCAGACTCAGGCAAGATCGCCGCCACACGTTCCTGCAAGGACTTTTCAGGAAGCTTCTGTTTCTTCTTCCGTGCGGCAGGGGTCAACTCCATTGTTCTCATGGGGGAGACAGTGTTGTTAGGGAAACCAGAAGGAGGTCTCATTAACCTCTTCACGTTTGAACTACTTCCAGGAGTGGTCATAGAAGGTGAAGAAGACTGACCCAAACCACCAATCTCCTGGGGGGCTTGAGCTTGGTTTATCCCCATGCCTGCTTGCATCTGTGCATGAACTTTAGACTGTGCTTGAGCCATGGCCTGAGCTTGAGTGAACTGAAACGGAGCTTGGAAGTTAGTTGCTATATGAGACTGAGCAAAGCCTCCAGGGACAGACGCAGAGGGCATCATCCCAGGGCTCCTGAACGGCGAAGGCGCAGAGCCTTGAGGATTATTGTTGTTACCAGACATCAGTGCCCTGTGAAATTCAGAAGAAAATAACACTCTTTTCAAAAAATCTGCTTAGAATCAAGTAAAGAGAAGACCTTTACTAATGATTCTCAGTAACCATCTTCAGTATCGATTAATCTAACAATTGAGATGAATGCAGACGCGATAGATCAGCTACCTAGAGAGATCGGAAGCCTAAAAACCCTAGATTTTTCTAAGGTTGGTGCACAGTTTAATGAGTTAGAATTGATCCCAAGAGGTTATTTACCAAATGTGACGAGACGAAAAAGAAGAAGATTCGCAGCTTTGTTTCTTCTTCTGATTATTTCTTCTTCGCCGGTGTTCCGCCGCTTCTCA
CDS Sequence
- >BnaA03G0057600ZS
ATGTCTGGTAACAACAATAATCCTCAAGGCTCTGCGCCTTCGCCGTTCAGGAGCCCTGGGATGATGCCCTCTGCGTCTGTCCCTGGAGGCTTTGCTCAGTCTCATATAGCAACTAACTTCCAAGCTCCGTTTCAGTTCACTCAAGCTCAGGCCATGGCTCAAGCACAGTCTAAAGTTCATGCACAGATGCAAGCAGGCATGGGGATAAACCAAGCTCAAGCCCCCCAGGAGATTGGTGGTTTGGGTCAGTCTTCTTCACCTTCTATGACCACTCCTGGAAGTAGTTCAAACGTGAAGAGGTTAATGAGACCTCCTTCTGGTTTCCCTAACAACACTGTCTCCCCCATGAGAACAATGGAGTTGACCCCTGCCGCACGGAAGAAGAAACAGAAGCTTCCTGAAAAGTCCTTGCAGGAACGTGTGGCGGCGATCTTGCCTGAGTCTGAGTTATACACGCAGCTTCTTGAGTTTGAGTCTCGTGTTGATGCTGCGTTGAGTAGAAAGAAGGTTGACATCCAGGAAGCTCTCAAGAACCCTCCTTGCGTACAGAAGACGCTTAGGATCTATGTGTTCAACACGTTTGCTAACCAAAACAATAATCCAAACGCTGACCCTGCAACATGGACTCTTAAGATTGTTGGTAGGATCCTGGAAGATGGGGTGGATCCGGAGACTACTAACCCATTGCATCCCAAGTTCTCGTCTTTCTTCAAGAAGGTTCAAGTTAGCCTTGATCAGAGGCTGTACCCTGAGAACCCGTTGATCACATGGGAGAACTCTCGTTCACCTGCTCCTCAGGAAGGGTTTGAGATAAAGAGGAAAGGGAATCAGGAGTTTGCAGCTACTATTCGTTTGGAGATGAACTACGTCCCTGAGAAGTTCAAGCTCTCTACTGCGTTGATGGATGTTCTTGGGATTGAGGTTGAAACCAGGCCAAGAATCATCGCTGCAATTTGGCACTACGTCAAGGCGAGGAAACTGCAGAGCCCAAACGACCCTTCTTTCTTCAACTGTGACGCTGCGCTTCAGAAAGTGTTTGGGGAACAGAAGTTGAAGTTCACAATGGTCTCTCAGAAGTTATCTCATCACTTGTCACCTCCACCACCGATTCACTTAGAACACAAGATCAAGCTGTCGGGAAGTAGCCCGGCCGTATCAGCGTGTTACGATGTCCTAGTGGATGTACCTGTCACTATCCAAAGGGATCTGAGCAACTTGTTGGCCAACGCAGAGAAGAATAAAGAGATTGAGGCTTGTGATGAAGCGATATGTGCAGCCATAAGGAAGATCCATGAGCATAGGAGGAGACGAGCATTTTTCTTGGGGTTCAGCCAATCACCAGCTGAATTCGTAAACGCGCTGATGGAATCGCAGAGCAAGGATCTGAAGGTTGTAGCGGGAGAAGCTAGTCGAAATGCTGAGAGAGAGCGTGGATCAGACTTTTTCAACCAACCTTGGGTCGAAGATGCAGTGATACGTTACTTGAACCGGAGGCCAGCAAGGGGGAACTAG
Protein Sequence
- >BnaA03G0057600ZS
MSGNNNNPQGSAPSPFRSPGMMPSASVPGGFAQSHIATNFQAPFQFTQAQAMAQAQSKVHAQMQAGMGINQAQAPQEIGGLGQSSSPSMTTPGSSSNVKRLMRPPSGFPNNTVSPMRTMELTPAARKKKQKLPEKSLQERVAAILPESELYTQLLEFESRVDAALSRKKVDIQEALKNPPCVQKTLRIYVFNTFANQNNNPNADPATWTLKIVGRILEDGVDPETTNPLHPKFSSFFKKVQVSLDQRLYPENPLITWENSRSPAPQEGFEIKRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQSPNDPSFFNCDAALQKVFGEQKLKFTMVSQKLSHHLSPPPPIHLEHKIKLSGSSPAVSACYDVLVDVPVTIQRDLSNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPAEFVNALMESQSKDLKVVAGEASRNAERERGSDFFNQPWVEDAVIRYLNRRPARGN