Information report for BnaA02G0054000ZS
Gene Details
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Functional Annotation
- Encodes a low molecular weight nuclear WDR protein which displays functional homology to the Swd2 protein, an essential subunit of the yeast histone methylation COMPASS complex. APRF1 acts upstream of FLC and promotes flowering under long day conditions.
Homologous
- Brassica oleracea: Bo2g011990
- Brassica rapa: Bra023473
- Citrullus lanatus: Cla97C10G196710
- Cucumis melo: MELO3C009987
- Cucumis sativus: CsGy3G037710
- Glycine max: Glyma.19G063300
- Gossypium hirsutum: Gohir.D10G086800, Gohir.A10G102600
- Juglans regia: Jr01_04920
- Manihot esculenta: MANES_17G112900
- Medicago truncatula: Medtr6g007797
- Populus trichocarpa: POPTR_017G071900v3
- Rosa chinensis: RchiOBHm_Chr2g0172941
- Vitis vinifera: VIT_14s0066g00720
Gene Resources
- Pfam: PF00400
- UniProt: A0A816WM05
- RefSeq: XP_013662395.1 , XP_013726113.1
- EMBL: HG994356
- AlphaFoldDB: A0A816WM05
- KEGG: bna:106429889
- OMA: HNEGYIR
- InterPro: IPR001680 , IPR015943 , IPR019775 , IPR020472 , IPR036322 , IPR037867
- PANTHER: PTHR19861 , PTHR19861:SF9
- SUPFAM: SSF50978
- PROSITE: PS00678 , PS50082 , PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A816WM05
- SMR: A0A816WM05
Sequences
gDNA Sequence
- >BnaA02G0054000ZS
CACTGAGGACGTTGTTGGTCGGCAGAAGGATCAGCGGGGGCTGGTGCCTCGCCGTCGTTGGGGATCCAGAAAGTGAGAACCGTAGAGGCAGCAACGAACATTGCTCTACGCGGTGCCCATTTCAGACACGACGCTACTCCTATGTTGTTCTCCCACCTCGCCACCTGCTTTTTTAGACTTTGTTTAGATACTGTGACAAGGATAATGGCAAAAAGGAATACAGTAGCTACAACTTTCTGAATCATTCATCTTCTTTTAAGTGAACCAGTGTCCATAACTGGTGTATGTACAATATCAATGGTGTTTGACTGTTCCGTATTTACCTCAGATGGGTTCTCGATGTTCCACGCATGTAAGGTTCCATCTCCTGAACCTGTATCCACATACAAATAACACTAACTGTGAGTCATGATAAAGATAAATCTAGCATTATCTGGACAAGTGCATGACCATATTACCTGACAGAACATACTTGCCATCTGGCGTGAAGGTGGCTTCTAGGGATGTACCCTGTGAAGGCTCCAAACTAAAACCACATTTCTGCAAAGCAAACAAAAATGAACATAATGTTCTGTCTTCTTCAAATGAAAGATAAAAAATGTAGTTACCTTCTCTCCATGATATGCGTCAAGAACGTAGATATTGTTATTTGTGGTAGTAAGAAGCATAGATTTTCCATCGTTGCTGAATTTAATATCGTTAACCTCAGCAGTATCACCACCCACCAGAAATGTGTCAAAGGGACCCTACAGAAGAGATCAACTGGGTTTAGTTAGAACTACAAGAGAATTCGTTTGCAAGGTTGTGTGAATCATAGCAAGTAGCTAACCTTGTCATAACATCTGGAATCAAATAACTTAACAGCACCTCCTTCCATTGCAATTGCAAACACCAGGCCTTGTTGGTCGTAAGCTACCGCAGGTCTCCCACGTAGGTGTAGAATTCCCTGTAGACTAAAAGGGTAAGCACAAATCATGAAACTATATGCATTACAAGAGAGGCTGTTAACTAGGGAAGAGAGCCTAAATCTAGATTCTAAAATGTTACATGGTTGCAGCATCTTCATCAAGTCAATTAACAACAAGAAAGAGCACTTTCTTGACTAAATCTCTAGCATAATCATATGAAATTCTCAGGGACTTTGTGAAAGTGGAAACAAACCTGGCAGGCATTAACACGAAGATCCCAGAGTCTGACACTTCTGTCTAAAGAACCAGACATGAAGCTATCATTAATAGGCGACATACAAAGCGAAACAACCCTAAAAACAGAACAACATTTTTTCATCAATGTACATAATAATACTAGTGCATAAGCATATATCACCAATAAATTCAATCTCAGAGGTTATTAAAAGACCTGTCTTTGTGGCCTTTAAAGTAGCGAAGGATCCGATTATCATACATTGAGAGATATCTCAGAGATTCTGGTACATGAAAAAAAACTAAATGTGTTAACACCATTACTGAATAAACCAATCTCAAGCTAAGGTAAGTGAGAAGGAGGAGTCATCATTACCTCCAGTGGACTCAAGATTGTATAGAGAAGAGCAAATAAGAGAGCTGGGATGATGTGTAAAGCATACACGATCAGTCCCATGTTTCTTATGATATGTTACCTTCACCTGTCTACGCTTCAACAAAAAAAAAATGGATACAAAAAATAAATTAATCTATTTATCCCAAAATATTATTCTCAATTCCCTAAGGCAATTAGATTCCTCTCTCGCTAGAACACTATGAGCTAAGGAGAGAAACTGACTTAGCGTTGGCGATATCGAAGAGACGAAGCGAATCGTCCTCGCTCGACGTCACCAGCAGATCATCAGTCCTGTGGAACCCCACCGAACGTATCTTCCCTCCCTGCAAATCCAACGATGAGATCAATTGGATTTTGGCAAAAGTTAATCGGAGATCATAGGAGAAGAGAAAAGTAATTGCGTACGAAGTCGGAGAAGACTGCTCCGATGGCCATGCTGCGTACAAGTCCGTCGTCTAGCTCCGTCAACGACAT
CDS Sequence
- >BnaA02G0054000ZS
ATGTCGTTGACGGAGCTAGACGACGGACTTGTACGCAGCATGGCCATCGGAGCAGTCTTCTCCGACTTCGGAGGGAAGATACGTTCGGTGGGGTTCCACAGGACTGATGATCTGCTGGTGACGTCGAGCGAGGACGATTCGCTTCGTCTCTTCGATATCGCCAACGCTAAACAGGTGAAGGTAACATATCATAAGAAACATGGGACTGATCGTGTATGCTTTACACATCATCCCAGCTCTCTTATTTGCTCTTCTCTATACAATCTTGAGTCCACTGGAGAATCTCTGAGATATCTCTCAATGTATGATAATCGGATCCTTCGCTACTTTAAAGGCCACAAAGACAGGGTTGTTTCGCTTTGTATGTCGCCTATTAATGATAGCTTCATGTCTGGTTCTTTAGACAGAAGTGTCAGACTCTGGGATCTTCGTGTTAATGCCTGCCAGGGAATTCTACACCTACGTGGGAGACCTGCGGTAGCTTACGACCAACAAGGCCTGGTGTTTGCAATTGCAATGGAAGGAGGTGCTGTTAAGTTATTTGATTCCAGATGTTATGACAAGGGTCCCTTTGACACATTTCTGGTGGGTGGTGATACTGCTGAGGTTAACGATATTAAATTCAGCAACGATGGAAAATCTATGCTTCTTACTACCACAAATAACAATATCTACGTTCTTGACGCATATCATGGAGAGAAGAAATGTGGTTTTAGTTTGGAGCCTTCACAGGGTACATCCCTAGAAGCCACCTTCACGCCAGATGGCAAGTATGTTCTGTCAGGTTCAGGAGATGGAACCTTACATGCGTGGAACATCGAGAACCCATCTGAGGTGGCGAGGTGGGAGAACAACATAGGAGTAGCGTCGTGTCTGAAATGGGCACCGCGTAGAGCAATGTTCGTTGCTGCCTCTACGGTTCTCACTTTCTGGATCCCCAACGACGGCGAGGCACCAGCCCCCGCTGATCCTTCTGCCGACCAACAACGTCCTCAGTGA
Protein Sequence
- >BnaA02G0054000ZS
MSLTELDDGLVRSMAIGAVFSDFGGKIRSVGFHRTDDLLVTSSEDDSLRLFDIANAKQVKVTYHKKHGTDRVCFTHHPSSLICSSLYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKLFDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYHGEKKCGFSLEPSQGTSLEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVASCLKWAPRRAMFVAASTVLTFWIPNDGEAPAPADPSADQQRPQ