Information report for A4A49_02244
Gene Details
|
|
Functional Annotation
- Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs.
Homologous
- Actinidia chinensis: CEY00_Acc15976
- Capsicum annuum: T459_25176
- Citrullus lanatus: Cla97C05G079940
- Glycine max: Glyma.19G261200, Glyma.03G262100
- Gossypium hirsutum: Gohir.D07G138400, Gohir.A07G133700
- Juglans regia: Jr07_10040
- Lactuca sativa: gene-LSAT_3X140760
- Manihot esculenta: MANES_05G015200
- Populus trichocarpa: POPTR_002G181400v3
- Prunus persica: PRUPE_2G200900
- Sesamum indicum: SIN_1002242
- Solanum lycopersicum: Solyc10g005130.3
- Solanum tuberosum: PGSC0003DMG400011259
- Vitis vinifera: VIT_15s0048g02380
Gene Resources
- Pfam: PF00271 PF02170 PF04851 PF00636
- UniProt: A0A1J6I4E8
- EMBL: MJEQ01037190
- OMA: CGFHKYF
- InterPro: IPR000999 , IPR001650 , IPR003100 , IPR005034 , IPR006935 , IPR011907 , IPR014001 , IPR014720 , IPR027417 , IPR036085 , IPR036389 , IPR038248
- PANTHER: PTHR14950 , PTHR14950:SF37
- SUPFAM: SSF101690 , SSF52540 , SSF54768 , SSF69065
- PROSITE: PS00517 , PS50137 , PS50142 , PS50821 , PS51192 , PS51194 , PS51327
- Gene3D: 1.10.1520.10 , 2.170.260.10 , 3.30.160.20 , 3.30.160.380 , 3.40.50.300
- SMR: A0A1J6I4E8
- CDD: cd00593 , cd18034 , cd18802 , cd19869
- STRING: 49451.A0A1J6I4E8
Sequences
CDS Sequence
- >A4A49_02244
ATGGAGGTTGATGATGGTCGAGGTTCTGAGAAACCCTCATACTGGGTTGATGCTTGTGAGGATATTTCCTGTGATGAGTTTATTCAAGATTTTGTCCCCGTTGAGCCATTGAATCAATCGGGTCCGGCTAATGGCAGTGTTGATCCTTGTTTCTTTGGCGGAATTGATGGGATTCTTGAAAAATTAAAGAAAGTTGATGATTCTGTACCTTGTGTGGATCACAATGACAGTAATGGATGTAGTAAAGGTTCAGCTGCAGCTGAAATTATTAAGTACAATGAGCCACAAGTTAACAAGGATAATACTAAGCAAAAAGGAAGCGACAGGGGAAACAAGTCCTTGCATGAAGGAAATGGACTTTCTAGGCATAAGGAACGAGATTATCATGATAGTAAAGAAGAGAGAAATGGCAAAAGGGCACGAGTTAGTGGTGATAGCCACGAGAAGAGAGGCCGTGATAGACCACCTTTGGCTGCTAGGAAGAGATACCGCGACCGCGAGAATGATGAGATCAATAGAGTAGATAGGGATCAAAGGAAGAGAAGGGAAAATCATGGTGGGAGAGATAGGGATTGGAGGGAAGGAAGGGGCTTCTGGGAAAGGGACAAAGAAAAGAATGAGATGGTATTTCGGGTGGGTTCATGGGAAGCGGATAGAAATCGAGAGGGGAAGTTACCGACTGAGAGAAGCCTTGAACCTTCTGGAGCTATTGAGAAGAAAGATGTTAAACCAAAGGAACAAGCTCCCAAGGAGCAAGCACGCAAGTATCAGTTGGATGTACTTGAGCATGCCAGAAAGAAAAATACAATTGCTTTTCTTGAAACAGGAGCAGGAAAAACGCTTATTGCCATCCTCCTCATGAAGAGTTTATGTAATGACTTGCACAAACAGAACAAGAAGATGCTGGCTGTCTTTCTGGTCCCTAAAGTTCCACTTGTTTATCAGCAAGCAGAAGTTATTCGTGAGCAAACAGGTTATCAAGTTGGCCATTATTGTGGTGAGATGGGCCAAGATTTTTGGGATGCACGAAGGTGGCAGCGTGAGTTTGAAACTAAACAGGTCTTGGTTATGACTGCTCAGATTCTTCTGAACATCTTGAGGCACAGTATAATAAAAATGGAAGCAATTAATCTCCTTATTATGGATGAATGCCATCATGCTGTGAAGAAGCATCCGTATTCTTTAGTAATGTCTGAGTTCTATCATACAACGCAAAAGGACAAAAGGCCATCTGTTTTTGGCATGACTGCTTCACCTGTTAACTTGAAGGGTGTTTCCAGCCAAGTTGATTGTGCAATAAAGATTCGTAATTTGGAGACGAAATTAGATTCTGTCGTCTTTACCATAAAGGACCGCAAGGACCTCGAGAAACATGTGCCAATGCCGTCAGAAGTAGTAGTGGAGTATGATAAAGCTGCTAGTTTGTGGTCCCTTCATGAACAAATAAAACAAATGGAATCGGCGGTTGAAGAAGCTGCGCAGTCAAGTTCCAGAAGAAGTAAATGGCAATTTATGGGCGCTCGTGATGCTGGAGCTAGAGAAGAGCTGCGCCAAGTCTATGGTGTATCTGAAAGAACTGAAAGTGATGGGGCTGCTAATTTAATTCAAAAGTTGAGGGCTATCAACTATGCTCTTGGTGAACTGGGACAGTGGTGTGCCTATAAGGTAGCGCGTTCTTTTTTAACAGCTTTACAAAATGATGAAAGGGCAAGCTACCAGCTTGATGTCAAGTTCCAAGAATCCTACCTGGATAAGGTTGTCTCTCTCTTGCAATGCCAGTTATCAGAGGGAGCAGTTGCAGAAAATGGTAAGATGGATGAAGGTAACAATCCGAATAATGATTGTGATAGGCCTGATGAGATGGAGGAGGGTGAGCTTCTTGAAAGTCATGTTGTATCTAGTGGAGAGCATGTAGATGCGACTTTAGGAGCTGCTGTGGCTGATGGGAAAGTGACACCAAAAGTTCAATCATTAATTAAGATACTTCTCAAGTATCAGCATACAGAGGATTTTCGTGCTATAATATTCGTTGAACGCGTTGTGACAGCCTTGGTTCTTCCGAAGGTTTTTGAGGAGCTCCCTTCACTAAGTTTTATCACTTCATCAAGTTTAATTGGGCATAACAATAGTCAAGAAATGCGAACAGGCCAAATGCAGGACACGATAGCCAAATTTCGAGATGGTCGTATGAATTTGTTAGTTGCTACTAGTGTTGCTGAGGAAGGACTTGACATACGGCAATGCAACGTTGTTATCCGGTTTGACCTGGCCAAAACTATTTTGGCGTATATCCAGTCTAGGGGCCGTGCCCGTAAGCCTGGATCAGATTATATTTTGATGGTAGAGAGAGATAATTTGTCGCATGAAGCATTTCTGAGGAATGCCAGAAACAGTGAAGAGACATTGCGGAAAGAAGCAATTGAGCGGACTGATATTAGTCATCTCAAAGGTGCCTCCAAGTTGATCTCTGGGGAGGCACCAACAGATTCAGTTTATCAGGTGGAGTCCACTGGAGCTGTTGTGAGCTTAAATTCTGCTGTTGGGCTGATCCACTTCTATTGCTCCCAGCTACCAAGTGACAGGTACTCAATTCTCCGTCCTGAGTTTATAATGGAGCGTCATGAGAAGCCAGGTGGCCCTACTGAATATTCATGTAGGCTTCAACTCCCGTGCAATGCACCTTTCGAGAAACTTGAGGGCCCTGTGTGCAGCTCAATGCGCCTTGCCCAGCAGGCTGTTTGTTTGGATGCTTGCAAGAAGCTCCACCAGATGGGAGCATTTACTGACATGCTCTTGCCAGACAAGGGAAGCGGGGCGGAATTGGAGAAAGTTGAACAGGATGATGAAGGTGATCCAATTCCCGGAACTTCCAGGCACAGGGAATTTTATCCTGAAGGTGTAGCTGATATTCTCAAGGGTGAATGGATTTTGTCGGGGAAGGATTCTTGTGACAGCTCAAAGTTGGTTCACCTCTATATGTATGCTATCAAATGTGTGAATATTGGCACCTCGAAGGACCCATTCTTAACTGATGTGTCAGAGTTTGCAATACTGTTTGGCAATGAGCTGGATGCAGAGGTATTATCGATGTCGATGGATTTATTTATTGCTCGGACTGTAGAAACAAAGGCGACTCTTGTCTTCAGAGGGCCAATAGAAGTTACAGAGTCTAAGTTGGCGTCTCTTAAAAGCTTTCATGTAAGAATGATGAGCATTGTATTGGATGTTGATGTTGAGCCATCCACCACTCCTTGGGACCCTGCAAAGGCATATCTATTTGCCCCTGTTACTGGTGATGAATCTGGAGATCCTATAAAAGATATCAACTGGGATCTTATTAAAAAAATTACTAAAACTGATGTATGGAGCAATCCTCTTCAGAAAGCTCGTCCAGATGTATATCTTGGCACCAGTGAACGTGCTCTTGGTGGAGATCGAAGGGAATATGGCTTTGCGAAATTGCGACATGGTATGGCATTTGGATTGAAGTCTCATCCTACATACGGTGTTAGAGGTGCTATTGCAAACTTTGATGTGGTCAAAGCATCTGGATTGGTCCCTCACCGGAGTAGCCTTGATTTGGTTGAAGTTGATTTGAGTAAAGACAAGATAATGATGGCTGACTGTTGTCTTAGAGCAGAAGATATTGTAGGGAGAATTGTCACTGCAGCTCATTCTGGAAAGAGATTTTATGTTGATTGCATTCCCAATGATATGACTGCAGAGAACTCGTTTCCTAGGAAAGAAGGTTACCTAGGTCCTCTTGAGTACAGCAGTTATGCTGCTTATTACAAGCAAAAATTTGGGAAGCTCTTTTCATCAATTGTTTTCAAGTACAACCTTGGTGCATTTGGCTATCCAGTCCGACTTGTATGCAGGTATGGAGTTGATTTGGTCTATAAAAAGCAGCCTCTATTAAGAGGCCGTGGTGTTTCATATTGCAAGAACCTTTTGTCACCACGATTTGAACATTCAGAAGAACACGAGGGTGAACTTGAAGAAGCTACTGACAAAACATATTATGTTTTCCTCCCTCCTGAGCTCTGCTTTTTACATCCACTTCCGGGATCCCTTGTTCGGGGTGCTCAGAGATTGCCCTCGATCATGAGGAGGGTTGAGAGCATGCTGCTTGCTGTTCAGCTTAAGGATATGATTGGTTACCCTGTCCCAGCACTGAAGATCTTGGAAGCATTGACAGCTGCTTCATGCCAAGAGACTTTCTGCTATGAAAGAGCAGAGCTTCTTGGAGATGCCTATCTGAAATGGGTTGTTAGTCGGTATCTTTTCCTTAAATATCCCCAGAAACATGAAGGCCAACTCACCAGGATGAGACAACAATTGGTAAGCAACATGGTATTGTACCAATATGCCTTAAATAAGGGACTCCAATCATACATCCAAGCAGATCGATTTTCTCCGTCGAGATGGGCCGCTCCAGGGGTGTTGCCTGTGTATGACGAGGACACCAATGAAGAGGAATCATCCATGTTTGGTAATGAAATAATAGAAAATGGGACTGTGGCAGCAAAGACTCTTGCTGCTGATGAGTTTGAAGATGAGGAAGCTGAAGAAGGTGAGCTTGATACCGATTCAGGTTCGTATCGTGTACTCTCTAGCAAGACGATGGCTGATGTTGTGGAAGCACTGATTGGCGTATATTATGTTGATGGTGGAAAGTATGCTGCAAACCATTTCATGAAATGGATCGGGGTTGAGGTTGATTTCGACTTCAAAGAGACTGAGTACTCTATTAGGCCTTATAGCATTCCCGAGAATGTACTCAGGAGTGTTGACTTTGATAAATTACAAGGTGCTCTGAACATCAGCTTCAATGACAAAGGCCTACTGCTAGAAGCAATTACTCATGCTTCACGCCCGTCTTCTGGGGTCTCCTGTTATCAAAGACTGGAGTTTGTGGGTGATGCAGTACTAGATCATCTCATCACGAGGCACTTGTTCTTTACATACACAGATCTTCCCCCTGGCCGATTAACCGACTTGAGAGCTGCAGCTGTGAACAATGAGAATTTTGCACGTGTTGCGGTTAAACACGGCCTTCATTTACACCTTCGTCATGGATCCAGTGCTCTAGAAAAGCAGATTCGTGACTTTGTGATTGAGGTTAAAAATGAACTATCGAAACCAGGTTTCAACTCCTTTGGTTTAGGGGATTGCAAAGCTCCTAAAGTTCTTGGTGATATTTTTGAATCAATTGCTGGGGCTATTTTTCTTGACAGTGGGTGTGATACTGCAGTTGTGTGGAAGGTTTTCCAACCATTGTTGCATCCAATGGTCACACCAGAAACACTACCGATGCATCCAGTTCGTGAACTACAAGAACGTTGTCAACAACAAGCTCAAGGCTTAGAGTACAAAGCAAGTCGAAGTGGGAATATAGCTACAGTTGAAGTATATGTGGATGGTATTCAGGTTGGAATGGCTCAGAATCCTCAAAAGAAAATGGCACAGAAGTTGGCTGCCAGGAATGCCCTTGTTGTGTTGAAAGAGAGGGAGGAAGCCGAAGCTAAGAAGGCTGAAGATGGGAAGAAAAAGAAGAACGGAAACCCGTCGTATACCAGGCAGACGTTGAATGATATATGCTTACGCAGAAATTGGCCTATGCCACTGTATCGAAGCGTGCACGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATATGGTGTACGCGTAAATACTTCAGACAAAGGATGGACAGATGAATGTATTGGGGAACCTATGCCGAGTGTAAAGAAAGCCAAGGATTCTGCAGCATCTCTACTACTGGAACTTTTAAATAGATGGTATTCATGA
Protein Sequence
- >A4A49_02244
MEVDDGRGSEKPSYWVDACEDISCDEFIQDFVPVEPLNQSGPANGSVDPCFFGGIDGILEKLKKVDDSVPCVDHNDSNGCSKGSAAAEIIKYNEPQVNKDNTKQKGSDRGNKSLHEGNGLSRHKERDYHDSKEERNGKRARVSGDSHEKRGRDRPPLAARKRYRDRENDEINRVDRDQRKRRENHGGRDRDWREGRGFWERDKEKNEMVFRVGSWEADRNREGKLPTERSLEPSGAIEKKDVKPKEQAPKEQARKYQLDVLEHARKKNTIAFLETGAGKTLIAILLMKSLCNDLHKQNKKMLAVFLVPKVPLVYQQAEVIREQTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMEAINLLIMDECHHAVKKHPYSLVMSEFYHTTQKDKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSVVFTIKDRKDLEKHVPMPSEVVVEYDKAASLWSLHEQIKQMESAVEEAAQSSSRRSKWQFMGARDAGAREELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVARSFLTALQNDERASYQLDVKFQESYLDKVVSLLQCQLSEGAVAENGKMDEGNNPNNDCDRPDEMEEGELLESHVVSSGEHVDATLGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIFVERVVTALVLPKVFEELPSLSFITSSSLIGHNNSQEMRTGQMQDTIAKFRDGRMNLLVATSVAEEGLDIRQCNVVIRFDLAKTILAYIQSRGRARKPGSDYILMVERDNLSHEAFLRNARNSEETLRKEAIERTDISHLKGASKLISGEAPTDSVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCRLQLPCNAPFEKLEGPVCSSMRLAQQAVCLDACKKLHQMGAFTDMLLPDKGSGAELEKVEQDDEGDPIPGTSRHREFYPEGVADILKGEWILSGKDSCDSSKLVHLYMYAIKCVNIGTSKDPFLTDVSEFAILFGNELDAEVLSMSMDLFIARTVETKATLVFRGPIEVTESKLASLKSFHVRMMSIVLDVDVEPSTTPWDPAKAYLFAPVTGDESGDPIKDINWDLIKKITKTDVWSNPLQKARPDVYLGTSERALGGDRREYGFAKLRHGMAFGLKSHPTYGVRGAIANFDVVKASGLVPHRSSLDLVEVDLSKDKIMMADCCLRAEDIVGRIVTAAHSGKRFYVDCIPNDMTAENSFPRKEGYLGPLEYSSYAAYYKQKFGKLFSSIVFKYNLGAFGYPVRLVCRYGVDLVYKKQPLLRGRGVSYCKNLLSPRFEHSEEHEGELEEATDKTYYVFLPPELCFLHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKDMIGYPVPALKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQLVSNMVLYQYALNKGLQSYIQADRFSPSRWAAPGVLPVYDEDTNEEESSMFGNEIIENGTVAAKTLAADEFEDEEAEEGELDTDSGSYRVLSSKTMADVVEALIGVYYVDGGKYAANHFMKWIGVEVDFDFKETEYSIRPYSIPENVLRSVDFDKLQGALNISFNDKGLLLEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHGLHLHLRHGSSALEKQIRDFVIEVKNELSKPGFNSFGLGDCKAPKVLGDIFESIAGAIFLDSGCDTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAQGLEYKASRSGNIATVEVYVDGIQVGMAQNPQKKMAQKLAARNALVVLKEREEAEAKKAEDGKKKKNGNPSYTRQTLNDICLRRNWPMPLYRSVHEGGPAHAKRFTYGVRVNTSDKGWTDECIGEPMPSVKKAKDSAASLLLELLNRWYS