Gene Details:
- Gene ID: A03p065520.1_BraROA
- Suggest Gene Name: SHK1 BINDING PROTEIN 1, PROTEIN ARGININE METHYLTRANSFERASE 5
- Description: putative flowering gene
- Species: Brassica rapa ro18
- Source: Putative flowering gene from PlantCFG
Protein Features:
Functional Descriptions:
- Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.
Homologous
- Arabidopsis thaliana — AT4G31120
Sequences:
gDNA Sequence
- >A03p065520.1_BraROA
TAAAGGCCGACCCAGTAGGAACGGCCATTGGTGTTGTGCATCGGAGTTGGAGTAGGTGAAGACACTGACCATTCATACCAAACCTGAACCCAAACATCAGAGAATCAGTAATGGTTCTCAAGACTAACAGAGTCGGTTGTCTACAATACGAGAATCATTGTGGTTTTAACAAAAAAAAAAATTACCTTCGAGGAACCACAACACCTCCAAAAGTGTACTTCTAATGGAGAACCAGGGTGAACCTCCACAGGCTTCCTCAATGGGAAAAAGATAGGGAACCTGCCAAAAGGAAACATGGTATTATATCAGTTTTCTTTTTAAGCAAGCAGGTTCGATAGGAGAGAATTATCAAAATGCCATATTTATAGATCAAGGCCATTACCAGCTGAACATGTTTGGTGTTGCTGTTGTAGGCTCGATGCCAAGATGGACATCTTTATACAGGACGGAATCAAAATAGCCAGCGAATCCTGTTGAGTTATGTATGATCGCAACAGATAAGTTTCAAATTAGGAAAAAATGTAGATAACTGACAAAAGACAAGAAAGTCCTGTTACCATGCACCAAGGCGGAGCCACCGTCGCTTGGTAGATTGAAATGAAGCTTTTTGTAGCGTTGGTTGTTGGCTTTTGTTGAGAAGTTTGGATGAGTAAATGTGAAAACCTAAGTAAGACCAAAACAGAACACCTGAGATCGAGAGATCAACAAGACTTGAATAAATGTATTCAAAGAGAACGCTATAAGCTATTAAGCAATCCTGAAGACAGAGTGAGACTCACGGATTGGGAAGGAGCAAGTTTAGCTACACTGTGCAGTTTTACGACATAAGGAGTTTCAAAGTGCGCAAGGTCTTTATGAGCCTTAACCTGCCAATTAATGTAAAAGAGTAAGACGAAACGAATCTTCTTATGATTAAGTGTACACAGCAGAAACTAGAAGGACCTACATCATTGTAAAGCTTCGTAGCTGTTACAGGTTGTATGAAACTTGTGTACCTGATATAGCGAAGATGATACTCGAGTTAGAGAAACATAATAAGATATGTAATGTCCTTTTAAGCTTTAAAATTGGACTAGCAGCTATTAGAGTATTGTTTTCTTATGGAAATTAGACTTTAGTAAAAGGGTACACATACGAGGATGGTATTGAAATTCCGTCTGGCTTCAGAAACCTTTGGGCTCCATCAAGACACTCAGGAGAGAGTTCATTGTCTCCAAAAGAACCCAGCAGTTCGCTAACCTGAAGAACAGAGGCAAACGAGAATTAGATGAACTGTATAATGTCGGTATGAGTAATAGCTACCAAAGTATGTGCCTACTGAGTACTGACCAATATATCAGCTTTCTCGGAAGCATTCCAAAAACGCATGTCGCATGATATTATCGTAACAATGCCTTCCCACCCTTCCAGCTTAACCAAATTCTGTCAGAAAGGATAACAATGCTCTATGAGTTAATTCAAAACAGCTCCGCACATCGGAAAGAAACAGCATAACATTTGGTCATATTTCAATAGACTTGGTTGCTGATAACTCACATGGAGCGTTACAACTGCATTAGGATTCTTCTCGACGGCATAAACTTTCAACTTGCGGTTAGTTTCTTCAGCTGCCTGGGATGAGAAACCAAAGAACGTTATAGATTAAGAAAAATGAGTTTCAAATTCTCTTTGTGACCAGCATGGAAAATTGCATCAAAACTACCTGCAACGATGCCCTCACAAGGGGTCCTCTTCCTGCTCCCACGACCATCAAGACCTACAAAGTATAACTTTAGTACTACTGAAGTATATTATAAGATACCCAAACACAAAAACTCATAAATTAAAACGCTACATGTAGCCTATGAAAGCAAAACATTGAGAGGTGACATACAGTAGTTAACTCGGACGCTTTTTCATCAGGAACCCTGTCCACCAATGCTTTAGCAACTGCCCTTTGATACTAGCAACACAAAGATGGACAAAAGTTAGGCGTGACATTAAAACCAACCACGCAAAATAGTGTTAGGGATAATGAGGTGTTAAAACTCAAGATGAGAAAGAAATAAAACTAGAATAAGCAAAAACATACTTGGATGTATTTAGTAGAGTCTCTCTCAAACGTCTCATAGGTTTGGGCTTCGAGGTTATCCATCAGAGGCTGTATTTTAAAAAAAAAAAAGTAGAAGCTCTTTACAGTAGCATTCTGCTAGATGGAAATCAGTATTACTTATGAAGAGAGACTAACCTGCAGGGGTGCCTGCAAAAAATCCCTGTAGCCAAGCTGTAAAAGGAATAAGATAACTATCAGAACTGAGTTTGATTCTGCCAGCCTGCATCTATGGTAATTTAAAAAAACAAGATCTGAGACAAAGGATCGAAGAAACGACCTCTATGCGTTCCTGTTCAGGAAGTGGTTCCATTTTCTGAAACAGATAAGCAACATAGTCCAAATATGACCGCAGGGGGTGCCTCTGCGTACCTGAGAACCATAGCATTTGAGAACTTATCAATAGAAAACATGGAACGTCTTTGAATATAAACAAAGGATAACAGCTAACTGTTACATAAAATACAGAAAATTTACCCTCAGTATTAGAATCAGAAGCCTTTGGAAGATTGTGAACAGGCTTTCCAGAAACTACAACCTGTAATTACAAGATCAATGATGATGAATCCTAGAACGAGAGAAATAGATATATCTCTGCTGAATGAAAAGAGGATTCTTATCACAGAATGACATTATCAGAAAGAAAAACTCAGTATAAAAAAAGCCAATCTTGGCACTTAATATTACTGTTCTACACATCGAAGACTATGATATATATATTACCTGGGCAGCATGATCAAAAAATCCTGCTACTAGCTTTTGGTGGCGTTTTGACAAGCAAGGATAACCCCGAGCATTTGTTAAGAACGACTGCAGAACCAAAAGCATTTTGTCAATTATGACTTCAAAATCGAGTTTATATTAAAATGTGGTAAAAGGGTGAGGCACTTACATCAGTGCTTATTATGGCTGCCCTGACAGACTCTCCCATCCAGCGTCCAAGTGATGTTTCAGAGGGTAGTGTACGCCTAGATATAAAAAAAAAAGACATGGTGTTATGTTTACGGAGGGAAAAGAAAAATCTGAGTCCACATTAACAAAAAGCAATCAAGAGTCTCTCTCAACTCACATAACATCAAGAGCAACAGACAGCTTACTGTCATGCTCACAAAGAAGACGAAACGAGTTCCACAGTTCCCAGGAATCAGTCTGCACAGAGACGAGTATATATTAAAACCAAAATGACATAACAAACAAACAAAAGGAAGCCTACTAAACAAAATGAACTGCTAAGAAAATTCATTTATATGTATAGGTTTGAAAAGTCTATAAACTCAAGCAGCCTAAAAAATCTGAGAAGGCACAAAAGGTAGGAACAATCTAAAGTTTGCATCAACTTTAATCAGACGTCTTACCAGACCCTCTGAGGCATCACCATCAGACTTCACCAGCGGAACCCTCAGCCATAACTTCATAGCAGAATGGCATTATAAAAATAAAAAGAGTTAAGAGTTTGATTGAAGATGCTATTGTAAAGAAAACATTAAGCTTAATAAAAAAAACATGACAGAAAGCAAGAAACTCGTAAACCACCTACCTGCAAGGTAGTCAGTCCTTGTAAGATCTGGTTCACACATCTGGCATAATTGGCACACGAGGTCCCTTTAGGAGTAGGAAGAAGGCATGCCTGCAAGTAAATAACAAACATTAGCAAGAACCAATACATCCTCGAGCATCAACAATCAAAAGCATAATGGATTCCTACGCACCTGTAAGGAGAGATGTGTAGCCCAGGCTATCTCTTGCTTCAACGTAGTTTCTGAATCCATTCGCAATACCTCATCTTCAGAGTCCAAGTCAATCCAAGAACTAATTTTTCCTAGAGAACAAAACATTAACCATTAAATCAAAACCACATCATTCACAACCAGCACAAGAGAACCATACCAACGACGTGACTGCTCCACTGAGAAGGCGCCAAGACCAAGTCAGAGCCAGAGACTGGTAGAACCTGAGTCTCCGAACCCTTTCCTTCCACCAAGCTCGGCCTATACGAAGGGTTCATCTGCGTAACAACACTCCATTAGAGAGAGACAAAACACTGAATGATATTTCTCGAAACGATAGGAAGAAAGAAACACGAACCAGAGGAGCAAGGACATAGTCAAAACCGCCGGTGGAGATGTTGAAGGAGAGGAGAGACGGAACATCGTCGGAGAAATCAGTCTCGACGCCGCAGTATCTGGACTCGCTTCTCTCCCATCCTCCTCTTTCTCCGAGCGGCAT
CDS Sequence
- >A03p065520.1_BraROA
ATGCCGCTCGGAGAAAGAGGAGGATGGGAGAGAAGCGAGTCCAGATACTGCGGCGTCGAGACTGATTTCTCCGACGATGTTCCGTCTCTCCTCTCCTTCAACATCTCCACCGGCGGTTTTGACTATGTCCTTGCTCCTCTGATGAACCCTTCGTATAGGCCGAGCTTGGTGGAAGGAAAGGGTTCGGAGACTCAGGTTCTACCAGTCTCTGGCTCTGACTTGGTCTTGGCGCCTTCTCAGTGGAGCAGTCACGTCGTTGGAAAAATTAGTTCTTGGATTGACTTGGACTCTGAAGATGAGGTATTGCGAATGGATTCAGAAACTACGTTGAAGCAAGAGATAGCCTGGGCTACACATCTCTCCTTACAGGCATGCCTTCTTCCTACTCCTAAAGGGACCTCGTGTGCCAATTATGCCAGATGTGTGAACCAGATCTTACAAGGACTGACTACCTTGCAGTTATGGCTGAGGGTTCCGCTGGTGAAGTCTGATGGTGATGCCTCAGAGGGTCTGACTGATTCCTGGGAACTGTGGAACTCGTTTCGTCTTCTTTGTGAGCATGACAGTAAGCTGTCTGTTGCTCTTGATGTTATGCGTACACTACCCTCTGAAACATCACTTGGACGCTGGATGGGAGAGTCTGTCAGGGCAGCCATAATAAGCACTGATTCGTTCTTAACAAATGCTCGGGGTTATCCTTGCTTGTCAAAACGCCACCAAAAGCTAGTAGCAGGATTTTTTGATCATGCTGCCCAGGTTGTAGTTTCTGGAAAGCCTGTTCACAATCTTCCAAAGGCTTCTGATTCTAATACTGAGGGTACGCAGAGGCACCCCCTGCGGTCATATTTGGACTATGTTGCTTATCTGTTTCAGAAAATGGAACCACTTCCTGAACAGGAACGCATAGAGGTCCTTGGCTACAGGGATTTTTTGCAGGCACCCCTGCAGCCTCTGATGGATAACCTCGAAGCCCAAACCTATGAGACGTTTGAGAGAGACTCTACTAAATACATCCAATATCAAAGGGCAGTTGCTAAAGCATTGGTGGACAGGGTTCCTGATGAAAAAGCGTCCGAGTTAACTACTGTCTTGATGGTCGTGGGAGCAGGAAGAGGACCCCTTGTGAGGGCATCGTTGCAGGCAGCTGAAGAAACTAACCGCAAGTTGAAAGTTTATGCCGTCGAGAAGAATCCTAATGCAGTTGTAACGCTCCATAATTTGGTTAAGCTGGAAGGGTGGGAAGGCATTGTTACGATAATATCATGCGACATGCGTTTTTGGAATGCTTCCGAGAAAGCTGATATATTGGTTAGCGAACTGCTGGGTTCTTTTGGAGACAATGAACTCTCTCCTGAGTGTCTTGATGGAGCCCAAAGGTTTCTGAAGCCAGACGGAATTTCAATACCATCCTCGTACACAAGTTTCATACAACCTGTAACAGCTACGAAGCTTTACAATGATGTTAAGGCTCATAAAGACCTTGCGCACTTTGAAACTCCTTATGTCGTAAAACTGCACAGTGTAGCTAAACTTGCTCCTTCCCAATCCGTTTTCACATTTACTCATCCAAACTTCTCAACAAAAGCCAACAACCAACGCTACAAAAAGCTTCATTTCAATCTACCAAGCGACGGTGGCTCCGCCTTGGTGCATGGATTCGCTGGCTATTTTGATTCCGTCCTGTATAAAGATGTCCATCTTGGCATCGAGCCTACAACAGCAACACCAAACATGTTCAGCTGGTTCCCTATCTTTTTCCCATTGAGGAAGCCTGTGGAGGTTCACCCTGGTTCTCCATTAGAAGTACACTTTTGGAGGTGTTGTGGTTCCTCGAAGGTTTGGTATGAATGGTCAGTGTCTTCACCTACTCCAACTCCGATGCACAACACCAATGGCCGTTCCTACTGGGTCGGCCTTTAG
Protein Sequence
- >A03p065520.1_BraROA
MPLGERGGWERSESRYCGVETDFSDDVPSLLSFNISTGGFDYVLAPLMNPSYRPSLVEGKGSETQVLPVSGSDLVLAPSQWSSHVVGKISSWIDLDSEDEVLRMDSETTLKQEIAWATHLSLQACLLPTPKGTSCANYARCVNQILQGLTTLQLWLRVPLVKSDGDASEGLTDSWELWNSFRLLCEHDSKLSVALDVMRTLPSETSLGRWMGESVRAAIISTDSFLTNARGYPCLSKRHQKLVAGFFDHAAQVVVSGKPVHNLPKASDSNTEGTQRHPLRSYLDYVAYLFQKMEPLPEQERIEVLGYRDFLQAPLQPLMDNLEAQTYETFERDSTKYIQYQRAVAKALVDRVPDEKASELTTVLMVVGAGRGPLVRASLQAAEETNRKLKVYAVEKNPNAVVTLHNLVKLEGWEGIVTIISCDMRFWNASEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIQPVTATKLYNDVKAHKDLAHFETPYVVKLHSVAKLAPSQSVFTFTHPNFSTKANNQRYKKLHFNLPSDGGSALVHGFAGYFDSVLYKDVHLGIEPTTATPNMFSWFPIFFPLRKPVEVHPGSPLEVHFWRCCGSSKVWYEWSVSSPTPTPMHNTNGRSYWVGL