Information report for A03p035730.1_BraROA
Gene Details
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Functional Annotation
- Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.
Homologous
- Actinidia chinensis: CEY00_Acc05725
- Arabidopsis thaliana: AT3G04680
- Brassica napus: BnaA03G0295700ZS, BnaC03G0354200ZS
- Brassica oleracea: Bo3g058530
- Brassica rapa: Bra001118
- Citrullus lanatus: Cla97C09G179810
- Glycine max: Glyma.20G242900
- Gossypium hirsutum: Gohir.A05G364100, Gohir.D04G050600
- Juglans regia: Jr01_00620, Jr10_02550
- Manihot esculenta: MANES_17G021000
- Nicotiana attenuata: A4A49_22719
- Populus trichocarpa: POPTR_017G077200v3
- Rosa chinensis: RchiOBHm_Chr2g0169161
- Vitis vinifera: VIT_14s0066g02630
Gene Resources
- Pfam: PF06807 PF16573 PF16575
- UniProt: A0A816VJC6
- EMBL: HG994357
- AlphaFoldDB: A0A816VJC6
- OMA: GENQWER
- InterPro: IPR010655 , IPR027417 , IPR028606 , IPR032319 , IPR032324 , IPR038238 , IPR038239 , IPR045116
- PANTHER: PTHR12755 , PTHR12755:SF6
- SUPFAM: SSF52540
- Gene3D: 2.40.30.330 , 2.60.120.1030 , 3.40.50.300
Sequences
gDNA Sequence
- >A03p035730.1_BraROA
TAATGACTCTCAAGCCATGTCAAAGATCCAGCGACCAGGATCTTGCTAGGCAATGCCCCTGGCGATGGTGCTAAATACGTTATCTTCTTCCTCAGCACATCAACCTCTGTCACATACACAAACCCTGAAACATTGCTGCATACAAAGCACAAGAGAGAGAGAAACAAACATCAAAAACAGAAGCCTTTGACTTCAAACAGTAGGAACATTTTGAGGTTACCTTGAGACAATCTGGTCTGGTTCTTCTGCATATGAGACAGCGAGGATAGAATGCAGCAGATCCCTCTCTTCGATATTCACAGGCGTTACCCTCAGCGGATTAGAAACAGGATCAGACCCTATTGGAAGAGCTGATCTCGGAGCTTGCGGTCCACCACCAATGCGGAACACTTGCACATCACTGAAGCTAGATGTGTTGGCATAAGGAGAGAGCTCTTTAGATAGACCGTAGAAATACTCCTGAATCCTAGAGCTTCTCGCTACTTTACGGTAGTCACGGTTCCTAGCCACAACTCCACCTGACTTGTGAAGCTTCACCACGTCCACGTTGCTCTTACTCTTCAGGACATCTTTAAGCATGCTGAAGAGCTTTTCTTGACCCAATACAAGTACAACGGAGGCGTTGAATGTTTCTATTGCATGGAGAAGCAGCTGCAAAACAAACACACAGAGACAGTTATTTTTTTTAAACAAAAGCTTTCAGAAGTAAACAGAACCAACGTTTACCTCATAACCGATACCATCGATCCATCCCATTGTGTTGATCACCATTCCAGCAGCTCGAGACTCAGGGTTTCCAAGAAACTGTCTCTCCAGCACTTGTGCAAGCTCCTTCACCATTGTTTTGTACAGTTCAACGTTGTTACTGAGAGAATAACGATAGACAACATTAATAACATATGACTGGGGAAGAGACATTTGAAAATCACTTACGCTGGTGTAGTGTGACCGTAGTAGTAGACGAGAGCCATATCTAGAGGAAACCCTTCAACAGGATCAAGTGGCATCTCTATAGGTGTAGCAGCAATAGAACCAGGTATTGTAATGGAGCCTTGGCCAACATCAAGGTCTACAAACGTAGGCTTCCATCCCTGTTTGGCTGCCCAACTAATAAGCATCTTAGTCAAGGTGCTCTTTCCTGAATCCGTAGGCCCTACCACAATAACCCTAGGTCCCTGCACAAAGCAGATTCTATAAAAAAACAAATGATATAGAAGAACAAGATCATTGAAAGAGAAGGAGTACCGTACCTGAGGAGGTTCTGAGTCAGTAGATGTGGAAGCTTTAGCAAAACGTCTCCTTGCATCTAGTATTGCGTGTACATTAACGTAGCTGACCATTGGTGTCTACAAAAAAAGCTGAGAGCTTCTTAGTAATCAACCTTTTGCTCTGAAAGGAAGAGTGGAAGATGAAACAAGAACCCTTACCTCATCTGCTGTATAGTCTGTTTCAGTGACACCATCCATCTCAATCGTCGCTCCATACCAAGTGAAAACCTGACAAGAATCAAAAGAGCGAACTTCAACTTCTGAAGAAATAGTTACCAAAACCACATATCTCCTCATAATCTCTATAAGAACTAACTTAACCGTTCTTAACTGATTCGTCATGATACAACCTAAAGCTTAAGCCTTTCATCCCAAAAAAAAAAACACAAAGACCATAAAGTCTTCAACTTTACCCAACCCATGAAGGCCAGAGGAGTGAATTTGATAGAAACTCAAATTAGTAACCAGAAGGAAACAACACACAAGAGAGAAACTTGGCAGAACCACAAATCTACTCATAGATCACCAGACGAACTAACTTAACGGTTCTAAAAACTGATTCATCATGTTACTACCTAAAGCTTAAGTCTTTCATCTCAAACAAAACACAAACACCATAAAGTCTTAAACTTTACCCAACCAATGAAGGCAAGAGGATGAACTTGATAGCAACTCAAGAACACACTTGGAGATTATAAAACCATAACTAATATTATTACTACCTAAAGCTTAAGCCTTTCATCCCAAACAAAACACAAAGACCAAAAAGTATTAAACTTTACCCAAACCCATGAATGCCAAAGAGTGAACTTGATAGCAATTCAAGAACACACTTGGAGATATAGAACCACAACGTACCGCAAATTTGAGGCGAGGAGGGAAGGTGCGCCAGATCTCAGGAGGAAGCTCAGCGCCGAAGATCTCAGCAGTCCCGTTAACCACACGGAGTCTGAGAGGCTCGTCGGAGACTTCTATCCTGAGCTCGCTTTCTCTGTCCAGCTTCACCTGCTTCAGATTACTAGACCCACCAGGAATGGCACCACTCATAGCCGGTGGGTTCATCGACGGACCACCGTAAGCCAT
CDS Sequence
- >A03p035730.1_BraROA
ATGGCTTACGGTGGTCCGTCGATGAACCCACCGGCTATGAGTGGTGCCATTCCTGGTGGGTCTAGTAATCTGAAGCAGGTGAAGCTGGACAGAGAAAGCGAGCTCAGGATAGAAGTCTCCGACGAGCCTCTCAGACTCCGTGTGGTTAACGGGACTGCTGAGATCTTCGGCGCTGAGCTTCCTCCTGAGATCTGGCGCACCTTCCCTCCTCGCCTCAAATTTGCGGTTTTCACTTGGTATGGAGCGACGATTGAGATGGATGGTGTCACTGAAACAGACTATACAGCAGATGAGACACCAATGGTCAGCTACGTTAATGTACACGCAATACTAGATGCAAGGAGACGTTTTGCTAAAGCTTCCACATCTACTGACTCAGAACCTCCTCAGGGACCTAGGGTTATTGTGGTAGGGCCTACGGATTCAGGAAAGAGCACCTTGACTAAGATGCTTATTAGTTGGGCAGCCAAACAGGGATGGAAGCCTACGTTTGTAGACCTTGATGTTGGCCAAGGCTCCATTACAATACCTGGTTCTATTGCTGCTACACCTATAGAGATGCCACTTGATCCTGTTGAAGGGTTTCCTCTAGATATGGCTCTCGTCTACTACTACGGTCACACTACACCAGCTAACAACGTTGAACTGTACAAAACAATGGTGAAGGAGCTTGCACAAGTGCTGGAGAGACAGTTTCTTGGAAACCCTGAGTCTCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGATGGTATCGGTTATGAGCTGCTTCTCCATGCAATAGAAACATTCAACGCCTCCGTTGTACTTGTATTGGGTCAAGAAAAGCTCTTCAGCATGCTTAAAGATGTCCTGAAGAGTAAGAGCAACGTGGACGTGGTGAAGCTTCACAAGTCAGGTGGAGTTGTGGCTAGGAACCGTGACTACCGTAAAGTAGCGAGAAGCTCTAGGATTCAGGAGTATTTCTACGGTCTATCTAAAGAGCTCTCTCCTTATGCCAACACATCTAGCTTCAGTGATGTGCAAGTGTTCCGCATTGGTGGTGGACCGCAAGCTCCGAGATCAGCTCTTCCAATAGGGTCTGATCCTGTTTCTAATCCGCTGAGGGTAACGCCTGTGAATATCGAAGAGAGGGATCTGCTGCATTCTATCCTCGCTGTCTCATATGCAGAAGAACCAGACCAGATTGTCTCAAGCAATGTTTCAGGGTTTGTGTATGTGACAGAGGTTGATGTGCTGAGGAAGAAGATAACGTATTTAGCACCATCGCCAGGGGCATTGCCTAGCAAGATCCTGGTCGCTGGATCTTTGACATGGCTTGAGAGTCATTAG
Protein Sequence
- >A03p035730.1_BraROA
MAYGGPSMNPPAMSGAIPGGSSNLKQVKLDRESELRIEVSDEPLRLRVVNGTAEIFGAELPPEIWRTFPPRLKFAVFTWYGATIEMDGVTETDYTADETPMVSYVNVHAILDARRRFAKASTSTDSEPPQGPRVIVVGPTDSGKSTLTKMLISWAAKQGWKPTFVDLDVGQGSITIPGSIAATPIEMPLDPVEGFPLDMALVYYYGHTTPANNVELYKTMVKELAQVLERQFLGNPESRAAGMVINTMGWIDGIGYELLLHAIETFNASVVLVLGQEKLFSMLKDVLKSKSNVDVVKLHKSGGVVARNRDYRKVARSSRIQEYFYGLSKELSPYANTSSFSDVQVFRIGGGPQAPRSALPIGSDPVSNPLRVTPVNIEERDLLHSILAVSYAEEPDQIVSSNVSGFVYVTEVDVLRKKITYLAPSPGALPSKILVAGSLTWLESH