Gene Details:

  • Gene ID: A03p024660.1_BraROA
  • Suggest Gene Name: PHYTOCHROME INTERACTING FACTOR 4
  • Description: putative flowering gene
  • Species: Brassica rapa ro18
  • Source: Putative flowering gene from PlantCFG

Protein Features:

Functional Descriptions:

  • Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Involved in shade avoidance response. Protein abundance is negatively regulated by PhyB.

Homologous

Sequences:

gDNA Sequence
  • >A03p024660.1_BraROA
    TAAGGTACAGATCAGAAACCACCTCTAGAAATTTAGCAATAGATCTCATCCCTAAAGAAGAAGATCTCCACCGGTTGGTCCCATTGATTCCAACATAATGTCCCAGAACTTGCCACGTGGCGTTTGGTCTGAAAGGTTGCTGTACTGTTGTGCTTACAGAATCATTATCTCCCTTGCTGTAATATCTCTCCTCTTTATGCTTCTGTCACTTTCTGTCTGTACAAAAAGAAGTAAAGAACCTTACCCATCTCTCTCTCCTCTGTTTCTTTCATGTTTTATGATAGCTTCTTAAGAAACTTCTGGCCTATGGGTTTATGTAGAGACTAGAGAGCAAGTGAGAGGAAAGAGAAGGTTTTGTTCCTTTTGGGCGTGGAACTTTAACTTCCACAAGTCAGGTTTAGATCTTCTACTTCTTCAGCTTCTGATTCGTCCAGAAGCTTTCCAAATCTGGTCAGTATTCTTATACGGTCTTTTGGTTTTAAGAGATGTTACTATATTTGGAATAAAATTAATAAAATGAACTCATGTTCCTGCTTTTTAATTTAATTATTTATAACTCTTTTTATATGATTAGTGTAACAAAATTATTGGAGTTGGGATTATAAAATTGTACTTTATGCTCCTTTGTTTCTCTTCTTAATTAATCATAAGATATGATTAGCTCTGTTCACTTATAATACTTTATAATATTGGAGGTTGATAAATAAATTATTTCCATGTCTCCAGAGATCTGACATGGAACACCAAGGTTGGAGTTTTGAGGAGAATTACAATCTGTTCAATAATAGAAGATTTATAAGGTAATATAATGTTTAATCTAATTTATTCACTAATTAAAAAGGACTATACAATAGTCCCTGAGTGTGTACATGTGTAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCAGCAGAGCCAAACTCATAGAGATCAAACTCAAGCTCAAGTTCAAGCTCAGAAACAGGATCAAGAAACCCTAAGATCCTACACTTTTCTTGAAGACCAAGAAACCGTCTCTTGGATCCAATACCCTCTAGATGAAGATCCATTTGAATCCGAAGACTTCACCTCACCTTTCTTCTCAACTATAGATCCCGTCCAGAGACCGGCTTCAGAGACGGTTAAGCACGAGGCCGGTCCTGTCCCTCCTGATCAAGTCATGCCTCCTCCTAAGTTTAGGCTAACGGGTTCATCATCAGGAGTCAGGGAACTAGGAAAAGAACAGTACTCGGTGATGACCGTTGGACCGAGCCACTGCGGGAGCAACCAATCTCAAACCGATCTCGATGTCTCATTGACTCATGATCCAAGTAAACCAATCGATGAGAGGCTCTACTCGAACGAAAATTCATCATCAGGTGGCTCCTCTGGTTGCAGCCTTGGCAAGAACAACAAAGAAATAGCTTGTGGAAGAAGCATCACAGCAGACCGTAAGAGAAAACATATAATGGACACTGATGAATCTGTGTCTCAGTCAGATGTATGCTTTATTTTATAACTCATGATGATAAGTTCTTGAAACGTTTTCTTAGTCCATTTCTCATTGTTCTTGAAACGTTTTACAGGCTATCGGTAATAACAAGTCGAACCAACGATCAGGATCAACCCGAAGAAGTCGAGCAGCTGAAGTTCATAATCTTTCCGAAAGGGTATTTTTCTCAATTCGTCTAATTAATTTTTTTTCATCGTAAATGTATTTTTTGCTATTACCAAATTTAAACTAATAGCATTTCAATAAATTTCATTATTATTTATTATAAACTAAAACATCTATTTTATCGGAGGGTGTATAATGTATTCAGCCAAAGATAATATATACTAAACTCTGTTTCTTTTGTTAATTAAATTAGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCAAGAACTAATACCTAACTGCATAAAAGTAAGTTATAAACTTGAATCTGATATGGGGACTAATTGATTAAGTTAAAAAGAAATTGGTGTCACTCGGGTTTGTTTTTCTTGTAGACTGATAAAGCTTCAATTTTGGAAGAAGCCATAGATTATTTGAAGTCACTTCAGTTACAGCTTCAAGTTATGTGGATGGGGAGTGGAATGGCTGGTGCTGCAGCGACTCCTATTATGTTCCCTGGGGTACAGCCTCCTCCACCGTTCATCCGTCAGCTGCAAAGCCCGGTACTGTTGCCACGATTTCCGGTTATGGACGGGTCTGCTATTCAGAACAATCCTGGTTTAGTTTGTCAAAACCCGGTACAAAACCAAGTTTTCCCCGATCGGTTTGGTAGATATGTTGGCCTATTCCCACGTATGCAGGGCACGTCTCAGGTAAGGCTCCTCATATGTTACGTAGTTAAGTACATATAAGAGCCTAGTGAAATGCCACAAACGACGTAGTTTATTTGACATGTTGTGGTTTGATATTAAACGTAGCCGATGGAGATGATGACATTTGGTTCTCCGGCGGGACAGGAAAGTCAACGTACTTCTGCGCCGAAGACCACCGACGGACCTCGTTAG
CDS Sequence
  • >A03p024660.1_BraROA
    ATAAGGTACAGATCAGAAACCACCTCTAGAAATTTAGCAATAGATCTCATCCCTAAAGAAGAAGATCTCCACCGAATCATTATCTCCCTTGCTGTAATATCTCTCCTCTTTATGCTTCTGTCACTTTCTGTCTGTACAAAAAGAAAGACTAGAGAGCAAGTGAGAGGAAAGAGAAGGTTTTGTTCCTTTTGGGCGTGGAACTTTAACTTCCACAAGTCAGGTTTAGATCTTCTACTTCTTCAGCTTCTGATTCGTCCAGAAGCTTTCCAAATCTGGTTGATAAATAAATTATTTCCATGTCTCCAGAGATCTGACATGGAACACCAAGGTTGGAGTTTTGAGGAGAATTACAATCTGTTCAATAATAGAAGATTTATAAGGCCACAAGATGAACTAGTAGAGTTGTTATGGCGAGATGGGCAAGTGGTTCAGCAGAGCCAAACTCATAGAGATCAAACTCAAGCTCAAGTTCAAGCTCAGAAACAGGATCAAGAAACCCTAAGATCCTACACTTTTCTTGAAGACCAAGAAACCGTCTCTTGGATCCAATACCCTCTAGATGAAGATCCATTTGAATCCGAAGACTTCACCTCACCTTTCTTCTCAACTATAGATCCCGTCCAGAGACCGGCTTCAGAGACGGTTAAGCACGAGGCCGGTCCTGTCCCTCCTGATCAAGTCATGCCTCCTCCTAAGTTTAGGCTAACGGGTTCATCATCAGGAGTCAGGGAACTAGGAAAAGAACAGTACTCGGTGATGACCGTTGGACCGAGCCACTGCGGGAGCAACCAATCTCAAACCGATCTCGATGTCTCATTGACTCATGATCCAAGTAAACCAATCGATGAGAGGCTCTACTCGAACGAAAATTCATCATCAGGTGGCTCCTCTGGTTGCAGCCTTGGCAAGAACAACAAAGAAATAGCTTGTGGAAGAAGCATCACAGCAGACCGTAAGAGAAAACATATAATGGACACTGATGAATCTGTGTCTCAGTCAGATGCTATCGGTAATAACAAGTCGAACCAACGATCAGGATCAACCCGAAGAAGTCGAGCAGCTGAAGTTCATAATCTTTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTTGCAAGAACTAATACCTAACTGCATAAAAACTGATAAAGCTTCAATTTTGGAAGAAGCCATAGATTATTTGAAGTCACTTCAGTTACAGCTTCAAGTTATGTGGATGGGGAGTGGAATGGCTGGTGCTGCAGCGACTCCTATTATGTTCCCTGGGGTACAGCCTCCTCCACCGTTCATCCGTCAGCTGCAAAGCCCGGTACTGTTGCCACGATTTCCGGTTATGGACGGGTCTGCTATTCAGAACAATCCTGGTTTAGTTTGTCAAAACCCGGTACAAAACCAAGTTTTCCCCGATCGGTTTGGTAGATATGTTGGCCTATTCCCACGTATGCAGGGCACGTCTCAGCCGATGGAGATGATGACATTTGGTTCTCCGGCGGGACAGGAAAGTCAACGTACTTCTGCGCCGAAGACCACCGACGGACCTCGTTAG
Protein Sequence
  • >A03p024660.1_BraROA
    IRYRSETTSRNLAIDLIPKEEDLHRIIISLAVISLLFMLLSLSVCTKRKTREQVRGKRRFCSFWAWNFNFHKSGLDLLLLQLLIRPEAFQIWLINKLFPCLQRSDMEHQGWSFEENYNLFNNRRFIRPQDELVELLWRDGQVVQQSQTHRDQTQAQVQAQKQDQETLRSYTFLEDQETVSWIQYPLDEDPFESEDFTSPFFSTIDPVQRPASETVKHEAGPVPPDQVMPPPKFRLTGSSSGVRELGKEQYSVMTVGPSHCGSNQSQTDLDVSLTHDPSKPIDERLYSNENSSSGGSSGCSLGKNNKEIACGRSITADRKRKHIMDTDESVSQSDAIGNNKSNQRSGSTRRSRAAEVHNLSERRRRDRINERMKALQELIPNCIKTDKASILEEAIDYLKSLQLQLQVMWMGSGMAGAAATPIMFPGVQPPPPFIRQLQSPVLLPRFPVMDGSAIQNNPGLVCQNPVQNQVFPDRFGRYVGLFPRMQGTSQPMEMMTFGSPAGQESQRTSAPKTTDGPR