Gene Details:
- Gene ID: A01p008630.1_BraROA
- Suggest Gene Name: VERNALIZATION INDEPENDENCE 3, ARABIDOPSIS THALIANA HOMOLOG OF YEAST SKI8
- Description: putative flowering gene
- Species: Brassica rapa ro18
- Source: Putative flowering gene from PlantCFG
Protein Features:
Functional Descriptions:
- The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.
Homologous
- Arabidopsis thaliana — AT4G29830
Sequences:
gDNA Sequence
- >A01p008630.1_BraROA
CATGAGTAATCATAGAGCGATACACTCTTGTCGTCAGAGACACTAGCGAGACGACCCGCACGGACACCGGTTCCACCAAGTGGTCTAAACGCGACAGACCAAACCTGGTCATTATGGTTGCTCATTGTCTGAATAGCCGCTCTCATCTTAAGATCCCACAGCCTCACAGTCCTATCACTCGACCCCGTTGCTATAGCTCCACCGTCAGGGCTAGCATCAACGCTCAGCACCCAGCTCGTGTGCCCCGACATGGACCCCACAAGCGTTTTCCCTTCTGCGTCGTGCACGTTCACATGCCCATCATCTGATCCTGAGAAGAGGACTCTCGCGTCTACAGGGGAGAACACAAGGGACCTTACAGGCATGTTGTGTCCTTCAAGCTGGTGAAGAAGCTTCGAGCGATCAACATCAAAGACGCAGATCGTGCCATCCATCGAACCGCAAGCTAGACGTTTCCCGTTGGGAGACCAAGCCACGGAGAGAACGAACTTCTTGCTGCTGGTTTTGTCAGAAGGCTTTGGTGCTTCAGGACGTGGGATTGAGAGAGTTGAGATTAGTCTCCAGCTCGCAGTGTCCCAAAGCTTGACCGATGCACTACTTCCACCTGCAACAGCAAGGATTGTACCCTTGTAACATGTTAAAATGAATAAGTTAGGACATAGCAGTAGAGCATTGTTACTGTCTGATTTGAGCAAATCAGAAGTTGATCTAAAGTAATTTCAGACAACAAGCCAAACACAATCAAGTTCCTGTCTGATTTGAGCTACAGATACTCAACAATTTTCTAAGCATTATTCAAATCTATTACCTTAGGTTCAAATTGCATACCCCAAACCTCAGAAGGAGGAGCTTCGAGAACAGCGATGGTGGCATTAGTGTCGACATCGAAGACACGGACGAAGCTATCGAGGGAAGAAGAAGCTGCGATGATTCCGGAAGGATGCGCCGCCACAGCTGCTACTCCCAAGGAGTGTCCTGTGTTAGTCCTCACTAAATCCAGCTCGTCCGCTCTCCATAGCTTCACCGTCTCGTCTAGAGATCCGGTAAGAAGCAACGCCGGTCGTTCTTCCGTCGCCGGAACCCAAGTCGCCGCCCAAACGGAATCTTCGTGGGCGTTCTCGATCGATTTCAGACCTGCGAGTTTCAT
CDS Sequence
- >A01p008630.1_BraROA
ATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCCCACGAAGATTCCGTTTGGGCGGCGACTTGGGTTCCGGCGACGGAAGAACGACCGGCGTTGCTTCTTACCGGATCTCTAGACGAGACGGTGAAGCTATGGAGAGCGGACGAGCTGGATTTAGTGAGGACTAACACAGGACACTCCTTGGGAGTAGCAGCTGTGGCGGCGCATCCTTCCGGAATCATCGCAGCTTCTTCTTCCCTCGATAGCTTCGTCCGTGTCTTCGATGTCGACACTAATGCCACCATCGCTGTTCTCGAAGCTCCTCCTTCTGAGGTTTGGGGTATGCAATTTGAACCTAAGGGTACAATCCTTGCTGTTGCAGGTGGAAGTAGTGCATCGGTCAAGCTTTGGGACACTGCGAGCTGGAGACTAATCTCAACTCTCTCAATCCCACGTCCTGAAGCACCAAAGCCTTCTGACAAAACCAGCAGCAAGAAGTTCGTTCTCTCCGTGGCTTGGTCTCCCAACGGGAAACGTCTAGCTTGCGGTTCGATGGATGGCACGATCTGCGTCTTTGATGTTGATCGCTCGAAGCTTCTTCACCAGCTTGAAGGACACAACATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGACGCGAGAGTCCTCTTCTCAGGATCAGATGATGGGCATGTGAACGTGCACGACGCAGAAGGGAAAACGCTTGTGGGGTCCATGTCGGGGCACACGAGCTGGGTGCTGAGCGTTGATGCTAGCCCTGACGGTGGAGCTATAGCAACGGGGTCGAGTGATAGGACTGTGAGGCTGTGGGATCTTAAGATGAGAGCGGCTATTCAGACAATGAGCAACCATAATGACCAGGTTTGGTCTGTCGCGTTTAGACCACTTGGTGGAACCGGTGTCCGTGCGGGTCGTCTCGCTAGTGTCTCTGACGACAAGAGTGTATCGCTCTATGATTACTCATGA
Protein Sequence
- >A01p008630.1_BraROA
MKLAGLKSIENAHEDSVWAATWVPATEERPALLLTGSLDETVKLWRADELDLVRTNTGHSLGVAAVAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPEAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDARVLFSGSDDGHVNVHDAEGKTLVGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPLGGTGVRAGRLASVSDDKSVSLYDYS