Information report for A01p008630.1_BraROA
Gene ID: A01p008630.1_BraROA
Suggest Gene Name: VERNALIZATION INDEPENDENCE 3, ARABIDOPSIS THALIANA HOMOLOG OF YEAST SKI8
Description: putative flowering gene
Species: Brassica rapa ro18
Source: Putative flowering gene from PlantCFG
The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase. Loss of gene function leads to a redistribution of H3K4me3 and K3K36me2 modifications within genes but not a change in the overall abundance of these modifications within chromatin.
Copy
>A01p008630.1_BraROA
CATGAGTAATCATAGAGCGATACACTCTTGTCGTCAGAGACACTAGCGAGACGACCCGCACGGACACCGGTTCCACCAAGTGGTCTAAACGCGACAGACCAAACCTGGTCATTATGGTTGCTCATTGTCTGAATAGCCGCTCTCATCTTAAGATCCCACAGCCTCACAGTCCTATCACTCGACCCCGTTGCTATAGCTCCACCGTCAGGGCTAGCATCAACGCTCAGCACCCAGCTCGTGTGCCCCGACATGGACCCCACAAGCGTTTTCCCTTCTGCGTCGTGCACGTTCACATGCCCATCATCTGATCCTGAGAAGAGGACTCTCGCGTCTACAGGGGAGAACACAAGGGACCTTACAGGCATGTTGTGTCCTTCAAGCTGGTGAAGAAGCTTCGAGCGATCAACATCAAAGACGCAGATCGTGCCATCCATCGAACCGCAAGCTAGACGTTTCCCGTTGGGAGACCAAGCCACGGAGAGAACGAACTTCTTGCTGCTGGTTTTGTCAGAAGGCTTTGGTGCTTCAGGACGTGGGATTGAGAGAGTTGAGATTAGTCTCCAGCTCGCAGTGTCCCAAAGCTTGACCGATGCACTACTTCCACCTGCAACAGCAAGGATTGTACCCTTGTAACATGTTAAAATGAATAAGTTAGGACATAGCAGTAGAGCATTGTTACTGTCTGATTTGAGCAAATCAGAAGTTGATCTAAAGTAATTTCAGACAACAAGCCAAACACAATCAAGTTCCTGTCTGATTTGAGCTACAGATACTCAACAATTTTCTAAGCATTATTCAAATCTATTACCTTAGGTTCAAATTGCATACCCCAAACCTCAGAAGGAGGAGCTTCGAGAACAGCGATGGTGGCATTAGTGTCGACATCGAAGACACGGACGAAGCTATCGAGGGAAGAAGAAGCTGCGATGATTCCGGAAGGATGCGCCGCCACAGCTGCTACTCCCAAGGAGTGTCCTGTGTTAGTCCTCACTAAATCCAGCTCGTCCGCTCTCCATAGCTTCACCGTCTCGTCTAGAGATCCGGTAAGAAGCAACGCCGGTCGTTCTTCCGTCGCCGGAACCCAAGTCGCCGCCCAAACGGAATCTTCGTGGGCGTTCTCGATCGATTTCAGACCTGCGAGTTTCAT
Copy
>A01p008630.1_BraROA
ATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCCCACGAAGATTCCGTTTGGGCGGCGACTTGGGTTCCGGCGACGGAAGAACGACCGGCGTTGCTTCTTACCGGATCTCTAGACGAGACGGTGAAGCTATGGAGAGCGGACGAGCTGGATTTAGTGAGGACTAACACAGGACACTCCTTGGGAGTAGCAGCTGTGGCGGCGCATCCTTCCGGAATCATCGCAGCTTCTTCTTCCCTCGATAGCTTCGTCCGTGTCTTCGATGTCGACACTAATGCCACCATCGCTGTTCTCGAAGCTCCTCCTTCTGAGGTTTGGGGTATGCAATTTGAACCTAAGGGTACAATCCTTGCTGTTGCAGGTGGAAGTAGTGCATCGGTCAAGCTTTGGGACACTGCGAGCTGGAGACTAATCTCAACTCTCTCAATCCCACGTCCTGAAGCACCAAAGCCTTCTGACAAAACCAGCAGCAAGAAGTTCGTTCTCTCCGTGGCTTGGTCTCCCAACGGGAAACGTCTAGCTTGCGGTTCGATGGATGGCACGATCTGCGTCTTTGATGTTGATCGCTCGAAGCTTCTTCACCAGCTTGAAGGACACAACATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGACGCGAGAGTCCTCTTCTCAGGATCAGATGATGGGCATGTGAACGTGCACGACGCAGAAGGGAAAACGCTTGTGGGGTCCATGTCGGGGCACACGAGCTGGGTGCTGAGCGTTGATGCTAGCCCTGACGGTGGAGCTATAGCAACGGGGTCGAGTGATAGGACTGTGAGGCTGTGGGATCTTAAGATGAGAGCGGCTATTCAGACAATGAGCAACCATAATGACCAGGTTTGGTCTGTCGCGTTTAGACCACTTGGTGGAACCGGTGTCCGTGCGGGTCGTCTCGCTAGTGTCTCTGACGACAAGAGTGTATCGCTCTATGATTACTCATGA
Copy
>A01p008630.1_BraROA
MKLAGLKSIENAHEDSVWAATWVPATEERPALLLTGSLDETVKLWRADELDLVRTNTGHSLGVAAVAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWDTASWRLISTLSIPRPEAPKPSDKTSSKKFVLSVAWSPNGKRLACGSMDGTICVFDVDRSKLLHQLEGHNMPVRSLVFSPVDARVLFSGSDDGHVNVHDAEGKTLVGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPLGGTGVRAGRLASVSDDKSVSLYDYS