Information report for OsCCD1
Gene Details
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Functional Descriptions
- In this study, we investigated the impact of the rice CCD1 (OsCCD1) on the pigmentation of Golden Rice 2 (GR2), a genetically modified rice variety accumulating carotenoids in the endosperm.
- Despite high expression levels of OsCCD1 in sense plants, pigment analysis revealed carotenoid levels and patterns comparable to those of GR2, pleading against carotenoids as substrates in rice endosperm.
- To check whether OsCCD1 overexpressed in GR2 endosperm is active, in vitro assays were performed with apocarotenoid substrates.
Functional Keywords
Literature and News
- Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta . DOI: 10.1007/s00425-010-1205-y ; PMID: 20549230
- Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranial biosynthesis . DOI: 10.1111/j.1742-4658.2008.06820.x ; PMID: 19120446
- RNAi-mediated suppression of three carotenoid-cleavage dioxygenase genes, OsCCD1, 4a, and 4b, increases carotenoid content in rice . DOI: 10.1093/jxb/ery300 ; PMID: 30124964
Gene Resources
- UniProt: A0A0P0YD24
- EMBL: AP014968
- AlphaFoldDB: A0A0P0YD24
- EnsemblPlants: Os12t0640600-01
- Gramene: Os12t0640600-01
- KEGG: osa:4352923
- Orthologous matrix: RYVYCAI
- InterPro: IPR004294
- PANTHER: PTHR10543, PTHR10543:SF89
- OrthoDB: A0A0P0YD24
- SWISS-MODEL: A0A0P0YD24
- eggNOG: KOG1285
Sequences
cDNA Sequence
- >LOC_Os12g44310.2
GTGGGTGGGTGAGGCGCTAGACAGACCTCAGCCAATGTGAATGTGAGGTAGACACGTACAGTACGTACTAGATTAGTACATTACATACTCATGTCGTGTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAGTATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTCCATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCATAGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGGGAGTAGTAGTGTATATGCACGCATGAGGAGCAATTAACGAATATATTCCCTTCATCCTAAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACAACTTATTCAAAAAGTTTAAGTAATTATTAATTATTTTCTTACAATTTGATTAATTGTTAAATATACTTTAATGTATACATATAATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACGAACAGTCAAACATGTTTAAAAAAGTTCACGGCGTCAAACATCTAGAAAGGAGGGTGTATCATGTATCATCTGGAGTTCTAGTGTATATGCATGCATGATTTGTTCCAGACAA - >LOC_Os12g44310.1
GTGGGTGGGTGAGGCGCTAGACAGACCTCAGCCAATGTGAATGTGAGGTAGACACGTACAGTACGTACTAGATTAGTACATTACATACTCATGTCGTGTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAGTATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTCCATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCATAGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGGGAGTAGTAGTGTATATGCACGCATGAGGAGCAATTAACGAATATATTCCCTTCATCCTAAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACAACTTATTCAAAAAGTTTAAGTAATTATTAATTATTTTCTTACAATTTGATTAATTGTTAAATATACTTTAATGTATACATATAATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACGAACAGTCAAACATGTTTAAAAAAGTTCACGGCGTCAAACATCTAGAAAGGAGGGTGTATCATGTATCATCTGGAGTTCTAGTGTATATGCATGCATGATTTGTTCCAGACAA
CDS Sequence
- >LOC_Os12g44310.2
ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGA - >LOC_Os12g44310.1
ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGA
Protein Sequence
- >LOC_Os12g44310.2
MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA* - >LOC_Os12g44310.1
MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA*