Gene Details:

Functional Descriptions:

  • In this study, we investigated the impact of the rice CCD1 (OsCCD1) on the pigmentation of Golden Rice 2 (GR2), a genetically modified rice variety accumulating carotenoids in the endosperm.
  • Despite high expression levels of OsCCD1 in sense plants, pigment analysis revealed carotenoid levels and patterns comparable to those of GR2, pleading against carotenoids as substrates in rice endosperm.
  • To check whether OsCCD1 overexpressed in GR2 endosperm is active, in vitro assays were performed with apocarotenoid substrates.

Literature:

Gene Resources:

Sequences:

cDNA Sequence
  • >LOC_Os12g44310.2
    GTGGGTGGGTGAGGCGCTAGACAGACCTCAGCCAATGTGAATGTGAGGTAGACACGTACAGTACGTACTAGATTAGTACATTACATACTCATGTCGTGTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAGTATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTCCATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCATAGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGGGAGTAGTAGTGTATATGCACGCATGAGGAGCAATTAACGAATATATTCCCTTCATCCTAAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACAACTTATTCAAAAAGTTTAAGTAATTATTAATTATTTTCTTACAATTTGATTAATTGTTAAATATACTTTAATGTATACATATAATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACGAACAGTCAAACATGTTTAAAAAAGTTCACGGCGTCAAACATCTAGAAAGGAGGGTGTATCATGTATCATCTGGAGTTCTAGTGTATATGCATGCATGATTTGTTCCAGACAA
  • >LOC_Os12g44310.1
    GTGGGTGGGTGAGGCGCTAGACAGACCTCAGCCAATGTGAATGTGAGGTAGACACGTACAGTACGTACTAGATTAGTACATTACATACTCATGTCGTGTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAGTATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTCCATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCATAGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGGGAGTAGTAGTGTATATGCACGCATGAGGAGCAATTAACGAATATATTCCCTTCATCCTAAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACAACTTATTCAAAAAGTTTAAGTAATTATTAATTATTTTCTTACAATTTGATTAATTGTTAAATATACTTTAATGTATACATATAATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACGAACAGTCAAACATGTTTAAAAAAGTTCACGGCGTCAAACATCTAGAAAGGAGGGTGTATCATGTATCATCTGGAGTTCTAGTGTATATGCATGCATGATTTGTTCCAGACAA
CDS Sequence
  • >LOC_Os12g44310.2
    ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGA
  • >LOC_Os12g44310.1
    ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGA
Protein Sequence
  • >LOC_Os12g44310.2
    MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA*
  • >LOC_Os12g44310.1
    MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA*