Gene Details:
- MSU gene ID: LOC_Os12g44310
- RAPdb gene ID: Os12g0640600
- Gene Symbol: OsCCD1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In this study, we investigated the impact of the rice CCD1 (OsCCD1) on the pigmentation of Golden Rice 2 (GR2), a genetically modified rice variety accumulating carotenoids in the endosperm.
- Despite high expression levels of OsCCD1 in sense plants, pigment analysis revealed carotenoid levels and patterns comparable to those of GR2, pleading against carotenoids as substrates in rice endosperm.
- To check whether OsCCD1 overexpressed in GR2 endosperm is active, in vitro assays were performed with apocarotenoid substrates.
Function-related keywords:
Literature:
- Overexpression of the rice carotenoid cleavage dioxygenase 1 gene in Golden Rice endosperm suggests apocarotenoids as substrates in planta . DOI: 10.1007/s00425-010-1205-y ; PMID: 20549230
- Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranial biosynthesis . DOI: 10.1111/j.1742-4658.2008.06820.x ; PMID: 19120446
- RNAi-mediated suppression of three carotenoid-cleavage dioxygenase genes, OsCCD1, 4a, and 4b, increases carotenoid content in rice . DOI: 10.1093/jxb/ery300 ; PMID: 30124964
Related News:
Gene Resources:
- NCBI ID: AK066766
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os12g44310.2
GTGGGTGGGTGAGGCGCTAGACAGACCTCAGCCAATGTGAATGTGAGGTAGACACGTACAGTACGTACTAGATTAGTACATTACATACTCATGTCGTGTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAGTATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTCCATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCATAGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGGGAGTAGTAGTGTATATGCACGCATGAGGAGCAATTAACGAATATATTCCCTTCATCCTAAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACAACTTATTCAAAAAGTTTAAGTAATTATTAATTATTTTCTTACAATTTGATTAATTGTTAAATATACTTTAATGTATACATATAATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACGAACAGTCAAACATGTTTAAAAAAGTTCACGGCGTCAAACATCTAGAAAGGAGGGTGTATCATGTATCATCTGGAGTTCTAGTGTATATGCATGCATGATTTGTTCCAGACAA - >LOC_Os12g44310.1
GTGGGTGGGTGAGGCGCTAGACAGACCTCAGCCAATGTGAATGTGAGGTAGACACGTACAGTACGTACTAGATTAGTACATTACATACTCATGTCGTGTGCAGTAGTGTAAGCAGAAGCAGACGCACCAAAAGAGACGAACACTACTACTAGTATAGTATTCCCCATTGGATTCCATCCGCCGGCCGGCCTGCTGCCTGCCTGCCATTGATAGATTCCATCGTCGTCGTAGGATAGAGAGTACTAGTTTGCAATTCAATTCAATCCCCCATACCCATAGGCCATAGGATAGGAGTATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGACAAGTGACAGCGGACTGCATACATCCTACAGTAACTTGTTATATTTTAGTCGGAGGGAAATGATATATACATATGAATGTACATGTGTATCCTCTTACTCGGGGAAATAATTGGCTTAAGGTACATATATGTTTAACTCGAATTGAACAATTACTCCTATATTAATTACTTATTAAGGGAGGGTTATTATATATCTCTGTGTGTGTGCGTCATCGGGAGTAGTAGTGTATATGCACGCATGAGGAGCAATTAACGAATATATTCCCTTCATCCTAAAATATTTGACGCCGTTGACTTTTTTAAACATGTTTGACAACTTATTCAAAAAGTTTAAGTAATTATTAATTATTTTCTTACAATTTGATTAATTGTTAAATATACTTTAATGTATACATATAATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAAACGAACAGTCAAACATGTTTAAAAAAGTTCACGGCGTCAAACATCTAGAAAGGAGGGTGTATCATGTATCATCTGGAGTTCTAGTGTATATGCATGCATGATTTGTTCCAGACAA
CDS Sequence
- >LOC_Os12g44310.2
ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGA - >LOC_Os12g44310.1
ATGGGAGGCGGCGATGGCGATGAGGTGCTGCTGCTGCCGGAGCCGCGCCCTCGCAGGGGCCTCGCCTCCTGGGCGCTCGATCTGCTGGAGCGCGCCGCCGTCCGCCTCGGCCACGACGCCTCCAAGCCGCTCTACTGGCTCTCCGGCAACTTCGCCCCCGTCCACCACGAGACCCCGCCGGCCCCGGCCCTCCCCGTCCGCGGCCACCTCCCCGAGTGCTTGAATGGAGAATTTGTCAGGGTAGGACCCAATCCAAAGTTTGTCCCTGTCGCTGGCTATCATTGGTTTGATGGAGATGGAATGATCCATGCGATGCGTATCAAAGATGGGAAAGCTACCTATGTGTCGAGATATGTGAAGACTTCTCGTCTCAAGCAAGAAGAGTATTTTGGTGGAGCAAAGTTTATGAAGATTGGAGACCTGAAGGGATTTTATGGATTGTTTATGGTCCAAATGCAACAACTCCGGAAAAAACTCAAAGTATTGGATTTTACATATGGACATGGGACAGCTAATACTGCACTTATCTATCACCATGGTAAACTTATGGCCCTGTCAGAGGCAGATAAGCCCTATGTTGTTAAGGTCCTTGAAGATGGAGACTTGCAAACTCTTGGATTGTTGGATTACGACAAACGGTTGAAACACTCTTTCACTGCTCATCCAAAGGTCGATCCATTTACAGACGAAATGTTCGCTTTTGGATATTCGCATGAACCTCCTTACTGTACATACCGGGTCATTACCAAGGATGGAGCCATGCTTGATCCTGTGCCAATAACAATTCCAGAATCTGTAATGATGCACGACTTTGCCATTACAGAGAATTATTCTATTTTCATGGACCTTCCTCTGTTGTTCCGACCAAAGGAAATGGTGAAGAATGGTGAGTTTATCTACAAGTTTGATCCTACAAAGAAAGCTCGTTTTGGTATACTCCAACGTTATGAAAAGGATGACACAAACATCAGATGGTTTGAACTTCCCAACTGCTTCATATTCCACAATGCTAATGCTTGGGAAGAGGGTGACGAAGTTATCCTAATTACCTGCCGCTTGGAGAATCCTGACTTGGACAAGGTGAACGGTTACCAAAGCGACAATCTCGAGAACTTTGGGAATGAGCTGTATGAGATGAGATTCAACATGAAAACCGGTGCTGCTTCACAAAAGCAACTATCTGTTTCTGCTGTAGATTTTCCTCGAATTAATGAGAGCTACACTGGCAGAAAGCAGCGGTATGTGTATTGCGCTATTCTAAACAGCATAGCGAAGGTAGCAGGCATTATAAAATTTGATCTACATGCTGAACCGGAGATCAGTGGCATGAAACAACTTGAAGTGGGGGGAAATGTGAGAGGAATATTTGACTTGGGACCTGGTAGATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTCTTTATAAACGAGGAACAACTGGCAAAACAATCAGCGTGA
Protein Sequence
- >LOC_Os12g44310.2
MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA* - >LOC_Os12g44310.1
MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPLYWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMIHAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLKVLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITENYSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIFHNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQLSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAGIIKFDLHAEPEISGMKQLEVGGNVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMSADPVAVVELPSRVPYGFHAFFINEEQLAKQSA*