Gene Details:
- MSU gene ID: LOC_Os12g42760
- RAPdb gene ID: Os12g0622500
- Gene Symbol: OsSpo11-4 OsSPO11D
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.
- Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function.
- We further analyzed the biological function of OsSpo11-4 by RNA interference and found that down-regulated expression of OsSpo11-4 led to defects in male meiosis, indicating OsSpo11-4 is required for meiosis.
Function-related keywords:
Literature:
- The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay . DOI: 10.1186/1471-2199-13-1 ; PMID: 22248237
- OsSpo11-4, a rice homologue of the archaeal TopVIA protein, mediates double-strand DNA cleavage and interacts with OsTopVIB . DOI: 10.1371/journal.pone.0020327 ; PMID: 21637817
- Gene Expression Dynamics in Rice Peduncles at the Heading Stage . DOI: 10.3389/fgene.2020.584678 ; PMID: 33343630
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os12g42760.1
GAAAGTAAAATCAGTTAATGAAACAAGTACTGTAGAGAGAGAGAGAGAGAGAGAGGAGGGGAATTTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGCAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAGTACAACCCTTACGTGATTTTCAAAGGTGAACAACTCCCGGTTCCTATATGGGAACTGCCAGAGGAGAAGGTCCAAGATTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATTATTGTTAAGAGTAAATTGCAACTTGTGCCACCTTTTCTTA
CDS Sequence
- >LOC_Os12g42760.1
ATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAGTACAACCCTTACGTGATTTTCAAAGGTGAACAACTCCCGGTTCCTATATGGGAACTGCCAGAGGAGAAGGTCCAAGATTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGAGGACTGA
Protein Sequence
- >LOC_Os12g42760.1
MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTTESAQDGQDPPAGVYSYGYFSGSGNDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELPEEKVQDFHDRYFIAKDKSRVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNEEVKVSLAKAGKTISRSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQSKSDQAINDICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIPHRLDQIKDVCVEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQRTGLPVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYSRLSREDKTMLKNLWQDDLSDVWKRRIEEMISFDKKASFEAIHSLGFDYFATNLLPDMINKVREGYVQVQEKKEPQDTEASED*