Information report for OsSpo11-4;OsSPO11D
Gene Details
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Functional Descriptions
- Quantitative analyses of the rice SPO11 transcripts revealed the specific increase in OsSPO11D mRNA in the anthers containing meiotic pollen mother cells.
- Furthermore, we identified a novel SPO11 homologue, OsSPO11D, with robust DSB activity and a possible meiotic function.
- We further analyzed the biological function of OsSpo11-4 by RNA interference and found that down-regulated expression of OsSpo11-4 led to defects in male meiosis, indicating OsSpo11-4 is required for meiosis.
Literature and News
- The double-stranded break-forming activity of plant SPO11s and a novel rice SPO11 revealed by a Drosophila bioassay . DOI: 10.1186/1471-2199-13-1 ; PMID: 22248237
- OsSpo11-4, a rice homologue of the archaeal TopVIA protein, mediates double-strand DNA cleavage and interacts with OsTopVIB . DOI: 10.1371/journal.pone.0020327 ; PMID: 21637817
- Gene Expression Dynamics in Rice Peduncles at the Heading Stage . DOI: 10.3389/fgene.2020.584678 ; PMID: 33343630
Gene Resources
- UniProt: Q2QM00
- EMBL: AB219540, AK101363, AP008218
- AlphaFoldDB: Q2QM00
- EnsemblPlants: Os12t0622500-01
- Gramene: Os12t0622500-01
- KEGG: dosa:Os12g0622500
- Orthologous matrix: GAICENA
- InterPro: IPR002815, IPR004085, IPR013049
- PANTHER: PTHR10848, PTHR10848:SF3
- SUPFAM: SSF56726
- PROSITE: PS52041
- Gene3D: 1.10.10.10, 3.40.1360.10
- OrthoDB: Q2QM00
- SWISS-MODEL: Q2QM00
- Conserved Domain Database: cd00223
- eggNOG: KOG2795
Sequences
cDNA Sequence
- >LOC_Os12g42760.1
GAAAGTAAAATCAGTTAATGAAACAAGTACTGTAGAGAGAGAGAGAGAGAGAGAGGAGGGGAATTTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGCAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAGTACAACCCTTACGTGATTTTCAAAGGTGAACAACTCCCGGTTCCTATATGGGAACTGCCAGAGGAGAAGGTCCAAGATTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATTATTGTTAAGAGTAAATTGCAACTTGTGCCACCTTTTCTTA
CDS Sequence
- >LOC_Os12g42760.1
ATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAGTACAACCCTTACGTGATTTTCAAAGGTGAACAACTCCCGGTTCCTATATGGGAACTGCCAGAGGAGAAGGTCCAAGATTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGAGGACTGA
Protein Sequence
- >LOC_Os12g42760.1
MDDSTDDDSYHPRKHYAYDRQVSSSRWRTSREYIRGPGPETHTTESAQDGQDPPAGVYSYGYFSGSGNDPQVQGHFVPEIQKYNPYVIFKGEQLPVPIWELPEEKVQDFHDRYFIAKDKSRVEARKTLNRLLEGNINTIERGHGYKFNIPKYTDNMEFNEEVKVSLAKAGKTISRSFCNANQREVASRTGYTIDLIERTLGAGLNISKRTVLYTNKDLFGDQSKSDQAINDICALTNIRRGSLGIIAAEKGIVVGNIFLELTNGKSISCSIGVQIPHRLDQIKDVCVEIGSRNIEYILVVEKHTMLNYLLEMDYHTNNNCIILTGCGMPTLQTRDFLRFLKQRTGLPVFGLCDPDPEGISILATYARGSCNSAYDNFNISVPSICWVGLSSSDMIKLNLSETNYSRLSREDKTMLKNLWQDDLSDVWKRRIEEMISFDKKASFEAIHSLGFDYFATNLLPDMINKVREGYVQVQEKKEPQDTEASED*