Information report for TCM12
Gene Details
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Functional Descriptions
- Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
- The inheritance behaviour and function of TCM12 were then analysed thorough map-based cloning, transgenic complementation and subcellular localisation.
- In addition, TCM12 was constitutively expressed, and its disruption resulted in down-regulation of some genes associated with chlorophyll biosynthesis and photosynthesis at low temperatures (20 °C).
- The thermo-sensitive chlorosis phenotype was caused by a single nucleotide mutation (T→C) on the fifth exon of TCM12 (LOC_Os12g35040) encoding iPGAM, localised to both nucleus and membranes.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q2QPB6
- EMBL: AK102566, DP000011
- AlphaFoldDB: Q2QPB6
- EnsemblPlants: Os12t0536000-01
- Gramene: Os12t0536000-01
- InterPro: IPR004456, IPR006124, IPR017850
- PANTHER: PTHR31209, PTHR31209:SF0
- SUPFAM: SSF53649
- Gene3D: 3.30.70.2130, 3.40.720.10
- Conserved Domain Database: cd16011
Sequences
cDNA Sequence
- >LOC_Os12g35040.1
GAAGAGAGTGAAAAAAAAAAAAAGCAAAAGCGGCGACGCCACACTAGCCAGCGGCGGAGGCGGTGGAGAGGAGAGGAGAGGGGAGAGGGGGGAAGCAAAGCGCGAGCGGCGATGGCGGCGAGGAGGAGCAGGGTGGCGTTCGTGCTGGTGGACGGGATCGGGGACGTGAGCATCCCGTCGCTCCGGGGGCGGACGCCGCTGGAGGCGGCGGCGGCGCCGGGGCTGGACGCGGTGGCGGCGGCCGGGGTGGCGGGGGCTCATGGACCCCGTCGAGCCGGGGCTCGCCTGCGGGAGCGACACGGCGCACCTCTCCCTCCTCGGGTACGACCCCCGCGTGTACTACCGCGGCCGCGGCGCGTTCGAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGGATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGGGCTGGGGCTCTCACTGGGCATTGATATCCTTGAAGCACCTGGAGCAACTGGAGACTATCGAACTCTCTTGACTTCCAAAGCTAAAGCTATAGCCAAGGCACTGTCTGCTCCTCTGGATACGCCACCTCGTGTTTTTGTGCCTGGAGAGGATGAATATAAATCTGGAAAGGAAAATGGATATGACTTTGGGTTCTTGCACATAAAGGCCATCGATGATGCCGGTCATGATAAGGCTGTCAAGCTTAAGGTACTAGGCCTAGAGGCTGTTGATCGGGCTATCGTTCAGCTTGCAAGGCTCCTGTGGGAAGCTGAAAAGTCTGGGAAATACCAGTATTTCCTTTGTGTCACCGGAGACCACTCTACTCCAGTTGAGTACGGTGACCACAGTTTTGAACCCGTTCCTTTTGTGTTGTGCCGACTTAGAGATTTCGTAGGAGCTATGGGGGAGGACAATGTTATCAACTTCCCCCTGGACGATTTCCTGCTTCCTTCAGTTAAATCTGGAGAAGATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTCAACGAGATTGCCGCTGCAAGGGGCTGCCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAGTGCCAGTTCAACATACTGACGTTTGTGTAATCTGTTGACCTTGAGGCTTCCATGTCTGTAATAATTGCAAACAAGGATGTATTCAGAGAACCAGCTCAGTCTGAGATGAATAAGGCTTCTCATGGATCTTGAATCTTGCACTGAAAAGCATAAATAATCTGACCTGCTGTGTACATTTACCAAG
CDS Sequence
- >LOC_Os12g35040.1
ATGGACCCCGTCGAGCCGGGGCTCGCCTGCGGGAGCGACACGGCGCACCTCTCCCTCCTCGGGTACGACCCCCGCGTGTACTACCGCGGCCGCGGCGCGTTCGAGTCCATGGGCGCCGGCCTCGCCATGGCCCCCGGCGACATCGCCTTCAAGTCAAACTTTGCTACGTTGGATGAAAGCACGGGGATCATTGTCAGCAGAAGGGCGGATCGACACTTTGAGGAGGAAGGCCCGATACTCTGTGCTGCATTGGATGGGTTGAAGCTCCCATCGTTTCCTGAATATGAAGTGAGAGTCAGATATGCTACTGAACACAGGTGTGGTGTGGTTGTGAAAGGACCGAGGCTGAGTGGGAACATTTCTGGAACTGATCCATTGAAGGACAACCGCTTGCATCTAAAGGCTGAACCTTTGGATGATTCAGAAGAAGCTAAAAACACGGCAGCTGTGGTCAATGAGCTTTCTAAGGAGATTACACGTATACTGGTGTCCCATCCTATCAATGCACAGCGCTCTGCCGAGGGGAAGAACATTGCAAATGTTGTGTTATTGCGAGGCTGTGGTATCCGGATTGAGGTTCCTGCCTTCGAAACCAAGCATGGACTTGCACCATGCATGGTGGCTCCTACAAAGATCATAGCTGGGCTGGGGCTCTCACTGGGCATTGATATCCTTGAAGCACCTGGAGCAACTGGAGACTATCGAACTCTCTTGACTTCCAAAGCTAAAGCTATAGCCAAGGCACTGTCTGCTCCTCTGGATACGCCACCTCGTGTTTTTGTGCCTGGAGAGGATGAATATAAATCTGGAAAGGAAAATGGATATGACTTTGGGTTCTTGCACATAAAGGCCATCGATGATGCCGGTCATGATAAGGCTGTCAAGCTTAAGGTACTAGGCCTAGAGGCTGTTGATCGGGCTATCGTTCAGCTTGCAAGGCTCCTGTGGGAAGCTGAAAAGTCTGGGAAATACCAGTATTTCCTTTGTGTCACCGGAGACCACTCTACTCCAGTTGAGTACGGTGACCACAGTTTTGAACCCGTTCCTTTTGTGTTGTGCCGACTTAGAGATTTCGTAGGAGCTATGGGGGAGGACAATGTTATCAACTTCCCCCTGGACGATTTCCTGCTTCCTTCAGTTAAATCTGGAGAAGATGTGGCAGAAAACATAGATGTAGCTGATCGCAAGTCTGATCAGCGCAAAGCTTTCAGTGGCGATTCTGTCTTTGAATTCAACGAGATTGCCGCTGCAAGGGGCTGCCTTGGACGTTTCCCTGGAAGTGAGATGATGGGCATCATCAAGAAGTTCATCAAAGCGAAGAACGATTAG
Protein Sequence
- >LOC_Os12g35040.1
MDPVEPGLACGSDTAHLSLLGYDPRVYYRGRGAFESMGAGLAMAPGDIAFKSNFATLDESTGIIVSRRADRHFEEEGPILCAALDGLKLPSFPEYEVRVRYATEHRCGVVVKGPRLSGNISGTDPLKDNRLHLKAEPLDDSEEAKNTAAVVNELSKEITRILVSHPINAQRSAEGKNIANVVLLRGCGIRIEVPAFETKHGLAPCMVAPTKIIAGLGLSLGIDILEAPGATGDYRTLLTSKAKAIAKALSAPLDTPPRVFVPGEDEYKSGKENGYDFGFLHIKAIDDAGHDKAVKLKVLGLEAVDRAIVQLARLLWEAEKSGKYQYFLCVTGDHSTPVEYGDHSFEPVPFVLCRLRDFVGAMGEDNVINFPLDDFLLPSVKSGEDVAENIDVADRKSDQRKAFSGDSVFEFNEIAAARGCLGRFPGSEMMGIIKKFIKAKND*