Gene Details:
- MSU gene ID: LOC_Os12g21710
- RAPdb gene ID: Os12g0405200
- Gene Symbol: HTD12
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- In addition, compared to the wild type, HTD12 had significantly lower levels of ent-2’-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height.
- Sequence analysis showed that a single nucleotide transition from guanine (G) to adenine (A) in the 3’ acceptor site between the 1 st intron and 2 nd exon of HTD12 alters its mRNA splicing in HTD12 plants, resulting in a 49-amino acid deletion that affects carotenoid biosynthesis and photosynthesis in this mutant.
- Here, we identified the high-tillering and dwarf 12 (HTD12) mutant and analyzed the effects of the HTD12 mutation on these important factors.
Function-related keywords:
- root , tiller , photosynthesis , dwarf , height , plant-height , strigolactone , tiller-number
Literature:
- HIGH-TILLERING AND DWARF 12 modulates photosynthesis and plant architecture by affecting carotenoid biosynthesis in rice . DOI: 10.1093/jxb/eraa497 ; PMID: 33097962
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os12g21710.1
GAAGATGCCGCCTCCACCACTCTGACGTCTACTAACCCCCCTCCCACCACCACCACCACCACCACCACCACCACGCACCTCTCCCCTCCCCGCCGCCGCCGATGGCCTCCCATCTCCTCCTCCGCCTTCCCGCCCCTCCCCCGCTTCTCCTACACTTCCCGCAGCGGCGAGTGACCCTGCCACAGAGCCGGGTGTCCCCCACGGCGCCGCTGCTCGGGGCCCGCCTCGTCTTCTCCCCAGCCTCCGCCGTCCGTCCGGCCCGGGCGAGGGGGTCCTCGATCGGCGGCGCGGGGGAGGACGACTCAGACGGCGAGGTGGACGGGGCCCCGCGCCTCGTCGGGGAGGACTCGGCGGCGTTCCGGCTGGGCGACCAGCGGGTGGCGTCGTGGGTCTACTTCGGCGGGATACTCGCCGTGGTGCTGTGGGGGCTCAACGTGCTGTGGATCGACCCGGCCACCGGGGTCGGGACCAGGTTCCTCGAGGCCGTCGCCGCCGTCTCCGACAACCACGAGGTCACTATGCTGCTCCTTACCATCATTTTTGCTGTCGTCCATAGTGGTATGGCAAGCTTACGTGAAACTGGTGAGAAAATAATAGGGGAGAGAGCTTACCGTGTAATGTTTGCTGGAATCTCACTGCCTTTAGCAGTTAGTACTGTTGTCTACTTTATAAATCATCGGTATGATGGCATTCAGCTATGGCAAGTTCAGGGTATTTCAGGCATCCATGAGCTTGTTTGGCTCTCATCTTTCATCTCATTCTTCTTTTTGTATCCATCTACTTTCAATCTTTTAGAAGTGGCAGCTGTTGACAAGCCAAAATTCCACATGTGGGAAACTGGAATAATGCGCATCACTAGACATCCACAGATGGTTGGACAGGTAATTTGGTGCTTAGCCCACACGTTATGGATTGGCAATTCAGTTGCTGTTGCGGCATCCGTTGGATTAATTGGTCACCATCTGTTTGGTGTTTGGAATGGTGATAGGAGGCTGGCATCACGCTATGGTGAAGCCTTTGAAGTTCTGAAAAAGAGAACAAGTGTTATTCCTTTTGCTGCAGTTATCGATGGAAGACAGAAACTACCCAAAGATTATTACAGGGAGTTCATCCGGTTACCATATCTCGCAATCACTGCATTAACTTTGGGAGCATACTTTGTTCATCCCTTAATGCAGGCGTCCAGCTACCAACTCCCTTGGTGATTGGTGTACATAACAATGTCCACAAAGAGAACACGATACAGAAATAGTGACTTTGTACTTTGATAGACCTGATAGCCTGGCCTTGCATTCGTTATTTTAATACTGGCCTGCTCACACTTGTTGTAAAAGAAGACTAACGAAAGAGTACCAGGTTGATGTAGATGGGAGTATTCAAGACAAATGGATTGCACGTTGCCATGCTTCCTGAGGACATCTCTATACTCATTAGTTGTGCATCTATACCAACTAGTGAGCGTGCACATGCAAGGCACGTCACGGATAGACATATATAACCATATAGGCAGAGTAAAAGTTTTTGTTACGTAGATCGTGCACAAAAGTCATGTTAAGCATTAGGAGTGCCAATTGGTGTAGCAAATCCCTTTTTATTTGCCTAATATTTTGTGTGTTCATTTGCCTCTTCAATGGCATTTTTAATGTCATGGACACTCCTATGGAAGAATCATTATTATCCGTCGCTATTTTAAATTTAGTACATGTACAGATTGGCTACATCCAATCCAGATAGATATATTTATGTATGGATTAACATACATTCTTGTTGTTGATTTTAAGTATACATGCTAGTTCCC
CDS Sequence
- >LOC_Os12g21710.1
ATGGCCTCCCATCTCCTCCTCCGCCTTCCCGCCCCTCCCCCGCTTCTCCTACACTTCCCGCAGCGGCGAGTGACCCTGCCACAGAGCCGGGTGTCCCCCACGGCGCCGCTGCTCGGGGCCCGCCTCGTCTTCTCCCCAGCCTCCGCCGTCCGTCCGGCCCGGGCGAGGGGGTCCTCGATCGGCGGCGCGGGGGAGGACGACTCAGACGGCGAGGTGGACGGGGCCCCGCGCCTCGTCGGGGAGGACTCGGCGGCGTTCCGGCTGGGCGACCAGCGGGTGGCGTCGTGGGTCTACTTCGGCGGGATACTCGCCGTGGTGCTGTGGGGGCTCAACGTGCTGTGGATCGACCCGGCCACCGGGGTCGGGACCAGGTTCCTCGAGGCCGTCGCCGCCGTCTCCGACAACCACGAGGTCACTATGCTGCTCCTTACCATCATTTTTGCTGTCGTCCATAGTGGTATGGCAAGCTTACGTGAAACTGGTGAGAAAATAATAGGGGAGAGAGCTTACCGTGTAATGTTTGCTGGAATCTCACTGCCTTTAGCAGTTAGTACTGTTGTCTACTTTATAAATCATCGGTATGATGGCATTCAGCTATGGCAAGTTCAGGGTATTTCAGGCATCCATGAGCTTGTTTGGCTCTCATCTTTCATCTCATTCTTCTTTTTGTATCCATCTACTTTCAATCTTTTAGAAGTGGCAGCTGTTGACAAGCCAAAATTCCACATGTGGGAAACTGGAATAATGCGCATCACTAGACATCCACAGATGGTTGGACAGGTAATTTGGTGCTTAGCCCACACGTTATGGATTGGCAATTCAGTTGCTGTTGCGGCATCCGTTGGATTAATTGGTCACCATCTGTTTGGTGTTTGGAATGGTGATAGGAGGCTGGCATCACGCTATGGTGAAGCCTTTGAAGTTCTGAAAAAGAGAACAAGTGTTATTCCTTTTGCTGCAGTTATCGATGGAAGACAGAAACTACCCAAAGATTATTACAGGGAGTTCATCCGGTTACCATATCTCGCAATCACTGCATTAACTTTGGGAGCATACTTTGTTCATCCCTTAATGCAGGCGTCCAGCTACCAACTCCCTTGGTGA
Protein Sequence
- >LOC_Os12g21710.1
MASHLLLRLPAPPPLLLHFPQRRVTLPQSRVSPTAPLLGARLVFSPASAVRPARARGSSIGGAGEDDSDGEVDGAPRLVGEDSAAFRLGDQRVASWVYFGGILAVVLWGLNVLWIDPATGVGTRFLEAVAAVSDNHEVTMLLLTIIFAVVHSGMASLRETGEKIIGERAYRVMFAGISLPLAVSTVVYFINHRYDGIQLWQVQGISGIHELVWLSSFISFFFLYPSTFNLLEVAAVDKPKFHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIGHHLFGVWNGDRRLASRYGEAFEVLKKRTSVIPFAAVIDGRQKLPKDYYREFIRLPYLAITALTLGAYFVHPLMQASSYQLPW*