Information report for HTD12
Gene Details
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Functional Descriptions
- In addition, compared to the wild type, HTD12 had significantly lower levels of ent-2’-epi-5-deoxystrigol (epi-5DS), a native strigolactone (SL), in both roots and root exudates, resulting in an obvious increase in tiller number and decrease in plant height.
- Sequence analysis showed that a single nucleotide transition from guanine (G) to adenine (A) in the 3’ acceptor site between the 1 st intron and 2 nd exon of HTD12 alters its mRNA splicing in HTD12 plants, resulting in a 49-amino acid deletion that affects carotenoid biosynthesis and photosynthesis in this mutant.
- Here, we identified the high-tillering and dwarf 12 (HTD12) mutant and analyzed the effects of the HTD12 mutation on these important factors.
Functional Keywords
- root , tiller , photosynthesis , dwarf , height , plant-height , strigolactone , tiller-number
Literature and News
Gene Resources
- UniProt: Q2QT64
- EMBL: AK066126, AP014968, DP000011
- AlphaFoldDB: Q2QT64
- EnsemblPlants: Os12t0405200-01
- Gramene: Os12t0405200-01
- Orthologous matrix: YVLNVAW
- InterPro: IPR009915
- PANTHER: PTHR35988, PTHR35988:SF2
- Gene3D: 1.20.120.1630
- OrthoDB: Q2QT64
- eggNOG: ENOG502QSJ3
Sequences
cDNA Sequence
- >LOC_Os12g21710.1
GAAGATGCCGCCTCCACCACTCTGACGTCTACTAACCCCCCTCCCACCACCACCACCACCACCACCACCACCACGCACCTCTCCCCTCCCCGCCGCCGCCGATGGCCTCCCATCTCCTCCTCCGCCTTCCCGCCCCTCCCCCGCTTCTCCTACACTTCCCGCAGCGGCGAGTGACCCTGCCACAGAGCCGGGTGTCCCCCACGGCGCCGCTGCTCGGGGCCCGCCTCGTCTTCTCCCCAGCCTCCGCCGTCCGTCCGGCCCGGGCGAGGGGGTCCTCGATCGGCGGCGCGGGGGAGGACGACTCAGACGGCGAGGTGGACGGGGCCCCGCGCCTCGTCGGGGAGGACTCGGCGGCGTTCCGGCTGGGCGACCAGCGGGTGGCGTCGTGGGTCTACTTCGGCGGGATACTCGCCGTGGTGCTGTGGGGGCTCAACGTGCTGTGGATCGACCCGGCCACCGGGGTCGGGACCAGGTTCCTCGAGGCCGTCGCCGCCGTCTCCGACAACCACGAGGTCACTATGCTGCTCCTTACCATCATTTTTGCTGTCGTCCATAGTGGTATGGCAAGCTTACGTGAAACTGGTGAGAAAATAATAGGGGAGAGAGCTTACCGTGTAATGTTTGCTGGAATCTCACTGCCTTTAGCAGTTAGTACTGTTGTCTACTTTATAAATCATCGGTATGATGGCATTCAGCTATGGCAAGTTCAGGGTATTTCAGGCATCCATGAGCTTGTTTGGCTCTCATCTTTCATCTCATTCTTCTTTTTGTATCCATCTACTTTCAATCTTTTAGAAGTGGCAGCTGTTGACAAGCCAAAATTCCACATGTGGGAAACTGGAATAATGCGCATCACTAGACATCCACAGATGGTTGGACAGGTAATTTGGTGCTTAGCCCACACGTTATGGATTGGCAATTCAGTTGCTGTTGCGGCATCCGTTGGATTAATTGGTCACCATCTGTTTGGTGTTTGGAATGGTGATAGGAGGCTGGCATCACGCTATGGTGAAGCCTTTGAAGTTCTGAAAAAGAGAACAAGTGTTATTCCTTTTGCTGCAGTTATCGATGGAAGACAGAAACTACCCAAAGATTATTACAGGGAGTTCATCCGGTTACCATATCTCGCAATCACTGCATTAACTTTGGGAGCATACTTTGTTCATCCCTTAATGCAGGCGTCCAGCTACCAACTCCCTTGGTGATTGGTGTACATAACAATGTCCACAAAGAGAACACGATACAGAAATAGTGACTTTGTACTTTGATAGACCTGATAGCCTGGCCTTGCATTCGTTATTTTAATACTGGCCTGCTCACACTTGTTGTAAAAGAAGACTAACGAAAGAGTACCAGGTTGATGTAGATGGGAGTATTCAAGACAAATGGATTGCACGTTGCCATGCTTCCTGAGGACATCTCTATACTCATTAGTTGTGCATCTATACCAACTAGTGAGCGTGCACATGCAAGGCACGTCACGGATAGACATATATAACCATATAGGCAGAGTAAAAGTTTTTGTTACGTAGATCGTGCACAAAAGTCATGTTAAGCATTAGGAGTGCCAATTGGTGTAGCAAATCCCTTTTTATTTGCCTAATATTTTGTGTGTTCATTTGCCTCTTCAATGGCATTTTTAATGTCATGGACACTCCTATGGAAGAATCATTATTATCCGTCGCTATTTTAAATTTAGTACATGTACAGATTGGCTACATCCAATCCAGATAGATATATTTATGTATGGATTAACATACATTCTTGTTGTTGATTTTAAGTATACATGCTAGTTCCC
CDS Sequence
- >LOC_Os12g21710.1
ATGGCCTCCCATCTCCTCCTCCGCCTTCCCGCCCCTCCCCCGCTTCTCCTACACTTCCCGCAGCGGCGAGTGACCCTGCCACAGAGCCGGGTGTCCCCCACGGCGCCGCTGCTCGGGGCCCGCCTCGTCTTCTCCCCAGCCTCCGCCGTCCGTCCGGCCCGGGCGAGGGGGTCCTCGATCGGCGGCGCGGGGGAGGACGACTCAGACGGCGAGGTGGACGGGGCCCCGCGCCTCGTCGGGGAGGACTCGGCGGCGTTCCGGCTGGGCGACCAGCGGGTGGCGTCGTGGGTCTACTTCGGCGGGATACTCGCCGTGGTGCTGTGGGGGCTCAACGTGCTGTGGATCGACCCGGCCACCGGGGTCGGGACCAGGTTCCTCGAGGCCGTCGCCGCCGTCTCCGACAACCACGAGGTCACTATGCTGCTCCTTACCATCATTTTTGCTGTCGTCCATAGTGGTATGGCAAGCTTACGTGAAACTGGTGAGAAAATAATAGGGGAGAGAGCTTACCGTGTAATGTTTGCTGGAATCTCACTGCCTTTAGCAGTTAGTACTGTTGTCTACTTTATAAATCATCGGTATGATGGCATTCAGCTATGGCAAGTTCAGGGTATTTCAGGCATCCATGAGCTTGTTTGGCTCTCATCTTTCATCTCATTCTTCTTTTTGTATCCATCTACTTTCAATCTTTTAGAAGTGGCAGCTGTTGACAAGCCAAAATTCCACATGTGGGAAACTGGAATAATGCGCATCACTAGACATCCACAGATGGTTGGACAGGTAATTTGGTGCTTAGCCCACACGTTATGGATTGGCAATTCAGTTGCTGTTGCGGCATCCGTTGGATTAATTGGTCACCATCTGTTTGGTGTTTGGAATGGTGATAGGAGGCTGGCATCACGCTATGGTGAAGCCTTTGAAGTTCTGAAAAAGAGAACAAGTGTTATTCCTTTTGCTGCAGTTATCGATGGAAGACAGAAACTACCCAAAGATTATTACAGGGAGTTCATCCGGTTACCATATCTCGCAATCACTGCATTAACTTTGGGAGCATACTTTGTTCATCCCTTAATGCAGGCGTCCAGCTACCAACTCCCTTGGTGA
Protein Sequence
- >LOC_Os12g21710.1
MASHLLLRLPAPPPLLLHFPQRRVTLPQSRVSPTAPLLGARLVFSPASAVRPARARGSSIGGAGEDDSDGEVDGAPRLVGEDSAAFRLGDQRVASWVYFGGILAVVLWGLNVLWIDPATGVGTRFLEAVAAVSDNHEVTMLLLTIIFAVVHSGMASLRETGEKIIGERAYRVMFAGISLPLAVSTVVYFINHRYDGIQLWQVQGISGIHELVWLSSFISFFFLYPSTFNLLEVAAVDKPKFHMWETGIMRITRHPQMVGQVIWCLAHTLWIGNSVAVAASVGLIGHHLFGVWNGDRRLASRYGEAFEVLKKRTSVIPFAAVIDGRQKLPKDYYREFIRLPYLAITALTLGAYFVHPLMQASSYQLPW*