Gene Details:
- MSU gene ID: LOC_Os12g17410
- RAPdb gene ID: Os12g0272800
- Gene Symbol: NRTP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Map-based cloning revealed that NRTP1 encoded a typical coiled-coil nucleotide binding leucine rich repeat (CC-NB-LRR) type protein and the mutation caused an amino acid substitution in the Nucleotide-Binding adaptor shared by Apaf1, certain R genes and CED4 (NB-ARC) domain, which may cause constitutive auto-activation of the NRTP1 protein.
Function-related keywords:
Literature:
- A semi-dominant mutation in a CC-NB-LRR-type protein leads to a short-root phenotype in rice . DOI: 10.1186/s12284-018-0250-1 ; PMID: 30284062
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os12g17410.1
ATGGCTGGAGCTATAGTGAGTGTTTCAACTGGTGCCCTGAGCACCCTGCTTCCTAAGCTCTCCCTGTTGATACAAGGGGAGTACAAGCTTCTCAAAGGCGTGAAAGGTGGGATCTCCTTTCTGAAGGATGAGCTGAGCAGCATGCATACCCTGCTGGTGAAGCTGGCGAACAACGAGGAGAAGTTGGATGAGCAGGTGAAGGATTGGAGGAACAAGGTGCGTGAGCTTAGCTATGATATTGAAGACTGCATCGACCTTTTCCTGCACAAGGTGAGCAGTTCTAATGCTAAAGCGGGCCTTGTCCGGAAGATGGCAGCTAAAATTAGAAAGTTATGCCATATTCAAATTGATCCTCGACTCCCAGTGCTCTATGTGGAAGCAGAGAAGCTTGTGGGGATCGATGGTCCTAGAGAGAAGATTATCGAGTGGCTGGAAAATGATGAATCTCATAAGCTCAAAGTAGTATGCATTGTGGGCTTTGGAGGTCTTGGAAAGACAACTCTTGCAAACCAAGTTTATCACAAAATGAAAGGTCAATTTGATTGTTCTTCTTTTATGCCAATTTCACGGAATCCTAATATAACAAAGATACTAGCTGATTTGCTCAAAGAATTGGGAAGTAGTGTTGATACATCAGATGATGAGCGGCAGCTCATATGCAAGCTCAGAACATTCCTACAGTGTAAGAGGTACTTGGTCATTGTTGATGATATTTGGAGCACAAAAGCATGGGAAGTTGTCAAGTGTGCTCTCCCAGAGAACAATTTATGCAGTAGAATAATTTCAACGACAAGAAATGCAGATGTTGCAACATCATGCTGCTCCAGTTTAGCAGGATATATCCATAACATGCAGCCCTTAAATGAGCAGGACTCTCAAAAGCTATTTTATAAGAGGATTTTTGGGGACAAGTTAGCATGCCCTCCTTACCTTGAACAAGTCTCTCATGGAATCATTAGCAAGTGCCATGGATTGCCATTAGCTCTTATCAGTATAGCTAGCCTGCTAGCTGGAAAATCACGTCTGAAGGAGCAATGGGAGCAAGTGTACAATTCTATTGGTTTTGCATTTAGTCAACAAGGAATTAGAGATATACTGCTGCTTAGCTACTATGATCTTCCGATTCATCTGAAAACTTGCTTGCGATATCTTAGTGTATTTCCAGAGGATTACGAGATTGATAGAGAAGAGCTAATATGGAGATGGATAGCTGAAGGCTTCATCAGTGAAGTGAAAGGTCAAACACTGGATCAAGTTGCTGAGAATTACTTCAATGATCTTGTAAACAGAAGCATGATCCATCCAGTTGACATCAAGTACGATGGCAGGGCAGATGCTTGTAAACTGCATGATATGCTGACATATTTGAAGATCAAATCTATCACTGAGCTTCCAGAGCAAATCGGAGACCTGCGAAATCTACTGACACTAGACATACGTAGCAGTAGGGTTGAAAAATTGCCATCAACAATAGGTTGTTTGAAAAATCTGGTGCGTCTACTTGTAGATTATAATGTGGAATTGCCCAATGAGATTGGAGATCTACAAGCCTTGCAGCAGCTGTCACGTGCTTCCGTAGTATTTGTTGAACAGCTGAAGCGGTTGACAAACCTAAGGGCGATTGACATAGACCTGCGTGGTAGCGAACAACTTGGTGATCATGATACGGCAAGGTATATGGAAGCTTTGAAGTCATCTCTTGCTGTGATGGGTAAGCTTCAAATATTGCAAATATCCTATGGTAATGATACGGTGATAGGAGAAAAACTCATGGATTTATTATGCTACTCACCATGCGTCCGAAAGCTTGTCATAGATAATTGCATATTCAGTCGGCTATCAAAGCAGCTGGGGTTGCTTGTTAACCTCAGGCATCTTGAAATAGGGGTTCGCAACATTAAGCAGGACGATCTCTGCGTTCTTGGAAGCATACCCACTCTGCTCTTCGTCAGGTTATTTGTAAAAAATGAACCTGATGAAAGGCTTGCCATCGGCAGCCATCAATTCCGATGCCTCAAGCAGTTCATCTTCAAAAACCACGGAGGTGGGCTGGAGATGTTGTTTATGCAGGAAGCAATGCCTGAGCTCCGATGGTTGTCTCTTGAATTCAGAGCGCGACTAACAGACTGCAAGATGGGTTTTGAGTTCGACTTCAAGCACCTTGCAAGCCTGGAGCACCTCGAAGTCTCAATCAATTGCCATTTCGCCACCTGGAGTGGGGTGGAGGCTGCAGAAGCTGCGGTCAGGAATGCAGCCAGTGCCCACCCAGGATGTCCCACAGTAGAAATCAATAGAGTCTGGGAAAGTTACATGGTAGATAATGAGCAAGGAGGAGGCGTGACATATGATCAATAA
CDS Sequence
- >LOC_Os12g17410.1
ATGGCTGGAGCTATAGTGAGTGTTTCAACTGGTGCCCTGAGCACCCTGCTTCCTAAGCTCTCCCTGTTGATACAAGGGGAGTACAAGCTTCTCAAAGGCGTGAAAGGTGGGATCTCCTTTCTGAAGGATGAGCTGAGCAGCATGCATACCCTGCTGGTGAAGCTGGCGAACAACGAGGAGAAGTTGGATGAGCAGGTGAAGGATTGGAGGAACAAGGTGCGTGAGCTTAGCTATGATATTGAAGACTGCATCGACCTTTTCCTGCACAAGGTGAGCAGTTCTAATGCTAAAGCGGGCCTTGTCCGGAAGATGGCAGCTAAAATTAGAAAGTTATGCCATATTCAAATTGATCCTCGACTCCCAGTGCTCTATGTGGAAGCAGAGAAGCTTGTGGGGATCGATGGTCCTAGAGAGAAGATTATCGAGTGGCTGGAAAATGATGAATCTCATAAGCTCAAAGTAGTATGCATTGTGGGCTTTGGAGGTCTTGGAAAGACAACTCTTGCAAACCAAGTTTATCACAAAATGAAAGGTCAATTTGATTGTTCTTCTTTTATGCCAATTTCACGGAATCCTAATATAACAAAGATACTAGCTGATTTGCTCAAAGAATTGGGAAGTAGTGTTGATACATCAGATGATGAGCGGCAGCTCATATGCAAGCTCAGAACATTCCTACAGTGTAAGAGGTACTTGGTCATTGTTGATGATATTTGGAGCACAAAAGCATGGGAAGTTGTCAAGTGTGCTCTCCCAGAGAACAATTTATGCAGTAGAATAATTTCAACGACAAGAAATGCAGATGTTGCAACATCATGCTGCTCCAGTTTAGCAGGATATATCCATAACATGCAGCCCTTAAATGAGCAGGACTCTCAAAAGCTATTTTATAAGAGGATTTTTGGGGACAAGTTAGCATGCCCTCCTTACCTTGAACAAGTCTCTCATGGAATCATTAGCAAGTGCCATGGATTGCCATTAGCTCTTATCAGTATAGCTAGCCTGCTAGCTGGAAAATCACGTCTGAAGGAGCAATGGGAGCAAGTGTACAATTCTATTGGTTTTGCATTTAGTCAACAAGGAATTAGAGATATACTGCTGCTTAGCTACTATGATCTTCCGATTCATCTGAAAACTTGCTTGCGATATCTTAGTGTATTTCCAGAGGATTACGAGATTGATAGAGAAGAGCTAATATGGAGATGGATAGCTGAAGGCTTCATCAGTGAAGTGAAAGGTCAAACACTGGATCAAGTTGCTGAGAATTACTTCAATGATCTTGTAAACAGAAGCATGATCCATCCAGTTGACATCAAGTACGATGGCAGGGCAGATGCTTGTAAACTGCATGATATGCTGACATATTTGAAGATCAAATCTATCACTGAGCTTCCAGAGCAAATCGGAGACCTGCGAAATCTACTGACACTAGACATACGTAGCAGTAGGGTTGAAAAATTGCCATCAACAATAGGTTGTTTGAAAAATCTGGTGCGTCTACTTGTAGATTATAATGTGGAATTGCCCAATGAGATTGGAGATCTACAAGCCTTGCAGCAGCTGTCACGTGCTTCCGTAGTATTTGTTGAACAGCTGAAGCGGTTGACAAACCTAAGGGCGATTGACATAGACCTGCGTGGTAGCGAACAACTTGGTGATCATGATACGGCAAGGTATATGGAAGCTTTGAAGTCATCTCTTGCTGTGATGGGTAAGCTTCAAATATTGCAAATATCCTATGGTAATGATACGGTGATAGGAGAAAAACTCATGGATTTATTATGCTACTCACCATGCGTCCGAAAGCTTGTCATAGATAATTGCATATTCAGTCGGCTATCAAAGCAGCTGGGGTTGCTTGTTAACCTCAGGCATCTTGAAATAGGGGTTCGCAACATTAAGCAGGACGATCTCTGCGTTCTTGGAAGCATACCCACTCTGCTCTTCGTCAGGTTATTTGTAAAAAATGAACCTGATGAAAGGCTTGCCATCGGCAGCCATCAATTCCGATGCCTCAAGCAGTTCATCTTCAAAAACCACGGAGGTGGGCTGGAGATGTTGTTTATGCAGGAAGCAATGCCTGAGCTCCGATGGTTGTCTCTTGAATTCAGAGCGCGACTAACAGACTGCAAGATGGGTTTTGAGTTCGACTTCAAGCACCTTGCAAGCCTGGAGCACCTCGAAGTCTCAATCAATTGCCATTTCGCCACCTGGAGTGGGGTGGAGGCTGCAGAAGCTGCGGTCAGGAATGCAGCCAGTGCCCACCCAGGATGTCCCACAGTAGAAATCAATAGAGTCTGGGAAAGTTACATGGTAGATAATGAGCAAGGAGGAGGCGTGACATATGATCAATAA
Protein Sequence
- >LOC_Os12g17410.1
MAGAIVSVSTGALSTLLPKLSLLIQGEYKLLKGVKGGISFLKDELSSMHTLLVKLANNEEKLDEQVKDWRNKVRELSYDIEDCIDLFLHKVSSSNAKAGLVRKMAAKIRKLCHIQIDPRLPVLYVEAEKLVGIDGPREKIIEWLENDESHKLKVVCIVGFGGLGKTTLANQVYHKMKGQFDCSSFMPISRNPNITKILADLLKELGSSVDTSDDERQLICKLRTFLQCKRYLVIVDDIWSTKAWEVVKCALPENNLCSRIISTTRNADVATSCCSSLAGYIHNMQPLNEQDSQKLFYKRIFGDKLACPPYLEQVSHGIISKCHGLPLALISIASLLAGKSRLKEQWEQVYNSIGFAFSQQGIRDILLLSYYDLPIHLKTCLRYLSVFPEDYEIDREELIWRWIAEGFISEVKGQTLDQVAENYFNDLVNRSMIHPVDIKYDGRADACKLHDMLTYLKIKSITELPEQIGDLRNLLTLDIRSSRVEKLPSTIGCLKNLVRLLVDYNVELPNEIGDLQALQQLSRASVVFVEQLKRLTNLRAIDIDLRGSEQLGDHDTARYMEALKSSLAVMGKLQILQISYGNDTVIGEKLMDLLCYSPCVRKLVIDNCIFSRLSKQLGLLVNLRHLEIGVRNIKQDDLCVLGSIPTLLFVRLFVKNEPDERLAIGSHQFRCLKQFIFKNHGGGLEMLFMQEAMPELRWLSLEFRARLTDCKMGFEFDFKHLASLEHLEVSINCHFATWSGVEAAEAAVRNAASAHPGCPTVEINRVWESYMVDNEQGGGVTYDQ*