Gene Details:
- MSU gene ID: LOC_Os12g03822
- RAPdb gene ID: Os12g0132400
- Gene Symbol: RIP1
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- We isolated a pollen-preferential gene, RICE IMMATURE POLLEN 1 (RIP1), from a T-DNA insertional population of japonica rice that was trapped by a promoterless beta-glucuronidase (GUS) gene.
- Semi-quantitative reverse transcription-PCR (RT-PCR) analyses confirmed that the RIP1 transcript was abundant at the late stages of pollen development.
- Microscopic analysis demonstrated that development in the RIP1 pollen was delayed, starting at the early vacuolated stage.
- These results indicate that RIP1 is necessary for pollen maturation and germination.
- Therefore, RIP1 is probably a nuclear protein that may form a functional complex with other proteins and carry out essential cellular and developmental roles during the late stage of pollen formation.
- Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development.
Function-related keywords:
Literature:
- Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development . DOI: 10.1093/pcp/pcl013 ; PMID: 16990291
- Transcriptional and post-transcriptional regulation of heading date in rice . DOI: 10.1111/nph.17158 ; PMID: 33341945
Related News:
Gene Resources:
- NCBI ID: AK111507
- UniProt accessions:
Sequences:
cDNA Sequence
- >LOC_Os12g03822.1
TCCAAGTTCCAACCTCCGCCCTCTCTTCTCTTCTCCTCTCTCCTTCTCCCCGAGCTGCCCCTCTTCTCTTCCTCCGATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAGATTTCTACAGTAGTTGTTTATCTGAATCAAGGTTTCATGGGTTTTTTTTTTTTTTGAAGTGGATGAGTGTAATGATACTGCATGTCTACAAGTATCAGTTTTTGATAGCTTGTATCCTAGTTTCGTTGTCATTCATAGTGGTAGGTTCTCAGTTTTGCACTGATGTCGCCCGAATGAGGATAATCAAAAGTATCTCGATCAACTGAAATGACATGTTATATTCTACAAGATAAGATTAATAATTGTGCATCTCTGTGTTTGCATTAGGTAATATTCACCTCGATCGTTTGTATATTTTTGCCTGATAATTAAGTTGGATATTAGGTCCATCGGCCAG - >LOC_Os12g03822.2
TCCAAGTTCCAACCTCCGCCCTCTCTTCTCTTCTCCTCTCTCCTTCTCCCCGAGCTGCCCCTCTTCTCTTCCTCCGATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAGATTTCTACAGTAGTTGTTTATCTGAATCAAGGTTTCATGGGTTTTTTTTTTTTTTGAAGTGGATGAGTGTAATGATACTGCATGTCTACAAGTATCAGTTTTTGATAGCTTGTATCCTAGTTTCGTTGTCATTCATAGTGGTAGGTTCTCAGTTTTGCACTGATGTCGCCCGAATGAGGATAATCAAAAGTATCTCGATCAACTGAAATGACATGTTATATTCTACAAGATAAGATTAATAATTGTGCATCTCTGTGTTTGCATTAGGTAATATTCACCTCGATCGTTTGTATATTTTTGCCTGATAATTAAGTTGGATATTAGGTCCATCGGCCAG
CDS Sequence
- >LOC_Os12g03822.1
ATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAG - >LOC_Os12g03822.2
ATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAG
Protein Sequence
- >LOC_Os12g03822.1
MGRKIKVKKKKASSKKAEASSSRVPSCPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASWNYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDDRIHNHVPVKIFGGHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNPFVGHTASVEDLQWSPTEADIFASCSADRTISIWDIRTGKKPCISVRAHNADVNVISWNRLASCMIASGCDDGSFSIRDLRLIKDDSLVAHFEYHKHPITSVEWSPHEPSTLAVSSADHQLTIWDLSLEKDAEEEAEFRARMREQADAPEDLPPQLLFVHQGQKDLKELHWHPQIPSMIISTAADGFNMLMPSNIDTTIREADA* - >LOC_Os12g03822.2
MGRKIKVKKKKASSKKAEASSSRVPSCPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASWNYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDDRIHNHVPVKIFGGHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNPFVGHTASVEDLQWSPTEADIFASCSADRTISIWDIRTGKKPCISVRAHNADVNVISWNRLASCMIASGCDDGSFSIRDLRLIKDDSLVAHFEYHKHPITSVEWSPHEPSTLAVSSADHQLTIWDLSLEKDAEEEAEFRARMREQADAPEDLPPQLLFVHQGQKDLKELHWHPQIPSMIISTAADGFNMLMPSNIDTTIREADA*