Information report for RIP1
Gene Details
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Functional Descriptions
- We isolated a pollen-preferential gene, RICE IMMATURE POLLEN 1 (RIP1), from a T-DNA insertional population of japonica rice that was trapped by a promoterless beta-glucuronidase (GUS) gene.
- Semi-quantitative reverse transcription-PCR (RT-PCR) analyses confirmed that the RIP1 transcript was abundant at the late stages of pollen development.
- Microscopic analysis demonstrated that development in the RIP1 pollen was delayed, starting at the early vacuolated stage.
- These results indicate that RIP1 is necessary for pollen maturation and germination.
- Therefore, RIP1 is probably a nuclear protein that may form a functional complex with other proteins and carry out essential cellular and developmental roles during the late stage of pollen formation.
- Rice Immature Pollen 1 (RIP1) is a regulator of late pollen development.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q1HFN6
- EMBL: DQ491004
- AlphaFoldDB: Q1HFN6
- KEGG: osa:4351421
- InterPro: IPR001680, IPR015943, IPR022052
- PANTHER: PTHR45903, PTHR45903:SF1
Homologs
- Brassica napus: BnaA10G0138200ZS, BnaC03G0124300ZS, BnaA03G0107700ZS, BnaC09G0414800ZS
- Brassica oleracea: Bo9g134840, Bo3g018870, Bo2g028700
- Brassica rapa: Bra002667, Bra020379
- Daucus carota: DCAR_001441
- Manihot esculenta: MANES_11G162700
- Musa acuminata: Ma08_g34280, Ma01_g19710
- Rosa chinensis: RchiOBHm_Chr1g0340261
- Zea mays: GRMZM2G032711
Sequences
cDNA Sequence
- >LOC_Os12g03822.1
TCCAAGTTCCAACCTCCGCCCTCTCTTCTCTTCTCCTCTCTCCTTCTCCCCGAGCTGCCCCTCTTCTCTTCCTCCGATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAGATTTCTACAGTAGTTGTTTATCTGAATCAAGGTTTCATGGGTTTTTTTTTTTTTTGAAGTGGATGAGTGTAATGATACTGCATGTCTACAAGTATCAGTTTTTGATAGCTTGTATCCTAGTTTCGTTGTCATTCATAGTGGTAGGTTCTCAGTTTTGCACTGATGTCGCCCGAATGAGGATAATCAAAAGTATCTCGATCAACTGAAATGACATGTTATATTCTACAAGATAAGATTAATAATTGTGCATCTCTGTGTTTGCATTAGGTAATATTCACCTCGATCGTTTGTATATTTTTGCCTGATAATTAAGTTGGATATTAGGTCCATCGGCCAG - >LOC_Os12g03822.2
TCCAAGTTCCAACCTCCGCCCTCTCTTCTCTTCTCCTCTCTCCTTCTCCCCGAGCTGCCCCTCTTCTCTTCCTCCGATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAGATTTCTACAGTAGTTGTTTATCTGAATCAAGGTTTCATGGGTTTTTTTTTTTTTTGAAGTGGATGAGTGTAATGATACTGCATGTCTACAAGTATCAGTTTTTGATAGCTTGTATCCTAGTTTCGTTGTCATTCATAGTGGTAGGTTCTCAGTTTTGCACTGATGTCGCCCGAATGAGGATAATCAAAAGTATCTCGATCAACTGAAATGACATGTTATATTCTACAAGATAAGATTAATAATTGTGCATCTCTGTGTTTGCATTAGGTAATATTCACCTCGATCGTTTGTATATTTTTGCCTGATAATTAAGTTGGATATTAGGTCCATCGGCCAG
CDS Sequence
- >LOC_Os12g03822.1
ATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAG - >LOC_Os12g03822.2
ATGGGTCGCAAGATCAAAGTCAAGAAGAAGAAGGCATCGAGCAAGAAAGCCGAAGCTTCATCGTCTAGGGTGCCTTCTTGCCCAGCCAAGGTATGGCAACCTGGTGTGGATACACTGGAAGAAGGGGAGGAGCTCCAGTTCGATCCTCAGGCTTACAATTATCTCAGAGGGTTTAACATTGGCTGGCCGTGCTTGAGTTTCGATGTTGTGCGGGATCAACTTGGACTCGTGCGATCGGAATTCCCACATACATTATATGGCGTTGCTGGAACTCAGGCTGAGAGGGCTTCATGGAATTATATAGGCATTTTCAAGATTTGCAACATAAATGGGAAGAAGCGGGAACCTATACCAGCATCAGCAATTGATGGCGACAGTGATATGGATAGTGAAAGTAGTAGTGATGAAGAAGATGAAGCAGCTAATGAAGACACAATGCCCATTTTACATTTAAAAAAGGTGGCTCATGCGGGGTGTGTAAATCGTATTCGCTCTATGAATCAGGAACCACATATATGTGCAACATGGGGAGACACAGGTCATGTTCAGGTGTGGGACTTCAGCTCCTTCCTTAATTCATTAGCAGAGTCTGGAGCAGTTGCACACAACGAAGACGACAGAATCCATAATCACGTACCTGTGAAAATATTTGGTGGCCATAAAGATGAAGGCTATGCAATTGATTGGAGTCCGCTTGTTACTGGAAGACTTGTTTCTGGTGATTGCAATAAATGCATCCACCTCTGGGAGCCAACTTCAAACAGTTGGAATGTCGATACAAATCCATTTGTAGGACACACTGCAAGTGTTGAAGATTTGCAGTGGAGTCCCACAGAAGCCGACATATTTGCCTCTTGTTCAGCCGACAGAACAATATCTATCTGGGATATACGGACAGGGAAGAAACCTTGTATTTCTGTTAGGGCTCACAATGCTGACGTGAATGTCATCTCATGGAACCGGCTCGCTAGCTGTATGATAGCTTCAGGATGCGATGATGGAAGTTTCTCAATTCGTGATCTTAGATTAATCAAGGATGACTCCTTGGTCGCCCATTTTGAATACCACAAGCACCCGATTACATCTGTGGAATGGAGCCCACATGAACCGTCAACACTAGCTGTATCATCAGCTGACCATCAACTGACAATTTGGGATCTTTCATTGGAAAAAGATGCTGAAGAGGAGGCAGAGTTCAGGGCAAGGATGAGAGAACAGGCTGATGCCCCTGAAGATTTACCCCCACAACTTCTCTTTGTTCATCAGGGCCAGAAAGACTTGAAAGAATTGCACTGGCATCCACAGATACCTAGTATGATCATATCTACGGCAGCTGATGGATTCAATATGTTGATGCCCAGCAACATCGATACAACCATTCGAGAAGCTGACGCATAG
Protein Sequence
- >LOC_Os12g03822.1
MGRKIKVKKKKASSKKAEASSSRVPSCPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASWNYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDDRIHNHVPVKIFGGHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNPFVGHTASVEDLQWSPTEADIFASCSADRTISIWDIRTGKKPCISVRAHNADVNVISWNRLASCMIASGCDDGSFSIRDLRLIKDDSLVAHFEYHKHPITSVEWSPHEPSTLAVSSADHQLTIWDLSLEKDAEEEAEFRARMREQADAPEDLPPQLLFVHQGQKDLKELHWHPQIPSMIISTAADGFNMLMPSNIDTTIREADA* - >LOC_Os12g03822.2
MGRKIKVKKKKASSKKAEASSSRVPSCPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASWNYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDDRIHNHVPVKIFGGHKDEGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSNSWNVDTNPFVGHTASVEDLQWSPTEADIFASCSADRTISIWDIRTGKKPCISVRAHNADVNVISWNRLASCMIASGCDDGSFSIRDLRLIKDDSLVAHFEYHKHPITSVEWSPHEPSTLAVSSADHQLTIWDLSLEKDAEEEAEFRARMREQADAPEDLPPQLLFVHQGQKDLKELHWHPQIPSMIISTAADGFNMLMPSNIDTTIREADA*