Information report for TSCD11
Gene Details
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Functional Descriptions
- Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
- The TSCD11 gene encodes a seryl-tRNA synthetase localized to chloroplast.
- Compared with the wild type (WT), mutation in TSCD11 led to significant alteration in expression levels of genes associated with chlorophyll biosynthesis, photosynthesis and chloroplast development under high temperature.
- The TSCD11 mutant developed albino leaves at the 3-leaf stage under high temperature (35
C), but had normal green leaves under low temperature (25 C). - Consistent with the albino phenotype, impaired chloroplasts, decreased chlorophyll content and increased ROS accumulation were found in the TSCD11 mutant at 35
C.
Functional Keywords
Literature and News
Gene Resources
- UniProt: Q2R1C1
- EMBL: AP014967, DP000010
- AlphaFoldDB: Q2R1C1
- EnsemblPlants: Os11t0610900-01
- Gramene: Os11t0610900-01
- KEGG: dosa:Os11g0610900, osa:4350906
- Orthologous matrix: EQNCIDR
- InterPro: IPR002314, IPR002317, IPR006195
- PANTHER: PTHR11778
- SUPFAM: SSF46589, SSF55681
- PROSITE: PS50862
- Gene3D: 1.10.287.40, 3.30.930.10
- OrthoDB: Q2R1C1
- SWISS-MODEL: Q2R1C1
- Conserved Domain Database: cd00770
- eggNOG: KOG2509
Sequences
cDNA Sequence
- >LOC_Os11g39670.1
CCAAAAAACCCCCACCTTTCTCTTATCCCCTCTATCCGCCGCTCGCCGGCCATCTCCCTCCCCCACCACCACCACCACCGCCGCCTCCTCTCCGGCGAGATGCTGACCTGCGGCCGCTTCCTCTCCTCCTCCGCCGCCGCCTCCACCCCCTCCCTCTCCCCCTTCCGGAACCTAACCCTCTCCCTCCTCCGCCGTCCCCATCTCCGCCTCCTCTCCTCCTCCGCCACCGCCTCCGCCGCCGCCGCCGCCGTCGAGCCCGACACCAAGGGTGGCGCGGGTGGCGGCGCCGCGAAGCCGCAGTGGAAGGCGGCGATAGACTTCAAGTGGATCCGGGAGAACACGGACGCCGTCGCCGCCAACATCCGCGACCGCAACTCCGCCGCCAACCTCGACCTCGTCCTCCAGCTCTACGACGAGTACCTCGCCTTGCAGAAGGAAGTTGAACGGCTCCGAGCTGAAAGAAATGCAGTTGCTAATAAGATGAAAGGGAAATTAGAACCATCTGTGCGTCAAGCCCTTGTTGAAGAAGGCAAGAACCTGAAAGAAGGGCTTATTGCCCTAGAAGAGGACCTTGTTCAGCTGACTGATAAGCTTCAACTAGAAGCACAAAGCATTCCTAACACCACACATCCAGATGCTCCTGTAGGGGGTGAGGAAAGTTCTGTCGTCAGAAAAGAGGTTGGTAGTCAGAGAAACTTCAATTTCACCATTAGAGATCACCTTCAGCTGGGAAAAGAACTTGATTTGTTTGATTTTGATGCAGCTGCTGAGGTTAGTGGCTCGAAGTTCTACTACTTAAAGAATGAAGCTGTTCTGTTGGAGATGGCCCTTGTTAATTGGGCCATCACTGAGGTCTCAAAGAAAGGTTTCACACCACTAATAACTCCGGAGATTGTAAGGTCATCTGTTGTTGAGAAATGTGGCTTCCAGCCAAGGGCCCAAAATACTCAGGTTTATTCGATCGATAACAGTGATCAGTGCCTCATAGGAACTGCAGAGATTCCTGTTGGCGGCATCCATATGGACTCTATACTCCCTGATTCTGATTTGCCTCGAAAATATGTAGCCTATTCACATTGTTTTCGCACAGAAGCTGGTGCCGCAGGTGCTGCCACTAGGGGCCTCTACCGTGTACATCAGTTTAGCAAGGTTGAGATGTTTGTATTTTGCCGGCCAGAGGAGAGCGACAAGTGCCATGAAGAACTTATCACTATTGAAGAGGAACTTTATGCATCACTTGGACTTCATTTCAAAACTTTGGATATGGCGACTGGGGATCTGGGAGCACCGGCCTACAGAAAGTTTGACATTGAGGCATGGATGCCAGGCCTAGATAGGTACGGTGAGATCTCGAGCGCGTCAAACTGCACAGACTATCAGAGCAGGCGGCTGGGCATCCGGTTTCGCCCATCACCTGCAGATCCTCCACCGGCGAACGCCAAGAAAGGAAAGGGCAGCTCAGGCCCAACACAGTTTGTCCACACGCTCAACGCGACAGCGGTTGCTGTTCCTCGCTTGATCATATGCATCCTGGAGAACTTTCAGCAAGAAGATGGAACGGTTGTGATCCCAGAGCCACTGAGGCCCTTCATGGGCGGACTTGAAGTGCTCTCCCCGAAAACCAAATGATCAGCTTGAAGGTCACCACGTTTACTTCGAATCTTGTTTTTTTTATAGATTTACAGTCTTTTTTTCCCCCGAGGATATTGGCAAGTGAATGTGCAGAATTTCAAAGAAATCTGTGGTCGATTCCAAATGTTCCATGCGAAATTCGTGGCTGTTAGTTGGCCACCGATTGTCGATTGTTGTTTTGGCAACATATCCAGGTTAACTATTTCCTCCTTGTCAAAATATAGCAAACTTGGAATGGATATATAGTCCAATGATTATGGACAAGGGGCTAGCCAGATTCTTTGGACTAGTATGCTTTCCATCAGTTTTAATAGTTTGCTATATTTTGGGATGGAGGGAGTAGTTGAACAAACTCAGTATTACACTTGTAGTTAACTGGTAACTCCACATATGCCCATTGTATTGGATATCCCTTGCGAAATATTTCCTCCGTCCCAAAGTATATGGTTTTTAGGTGGATGAGACATCTTAATACTATGAATCTGAACAGATTTAGTACTAGGATGTATTTCATTCACCCAAAATATGTTATACTTTGGGATGGTGGGAGTATTTGTCCACGGGAGAACTATACCGGAGTAGTTTGTGCTAGAACAATAGTACTAGTGCTTTGTCAGTTTAATATCTGTTCGTTTACGGCTGTGTTTAGTTCAGCACAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGATTGAAAA - >LOC_Os11g39670.2
CCAAAAAACCCCCACCTTTCTCTTATCCCCTCTATCCGCCGCTCGCCGGCCATCTCCCTCCCCCACCACCACCACCACCGCCGCCTCCTCTCCGGCGAGATGCTGACCTGCGGCCGCTTCCTCTCCTCCTCCGCCGCCGCCTCCACCCCCTCCCTCTCCCCCTTCCGGAACCTAACCCTCTCCCTCCTCCGCCGTCCCCATCTCCGCCTCCTCTCCTCCTCCGCCACCGCCTCCGCCGCCGCCGCCGCCGTCGAGCCCGACACCAAGGGTGGCGCGGGTGGCGGCGCCGCGAAGCCGCAGTGGAAGGCGGCGATAGACTTCAAGTGGATCCGGGAGAACACGGACGCCGTCGCCGCCAACATCCGCGACCGCAACTCCGCCGCCAACCTCGACCTCGTCCTCCAGCTCTACGACGAGTACCTCGCCTTGCAGAAGGAAGTTGAACGGCTCCGAGCTGAAAGAAATGCAGTTGCTAATAAGATGAAAGGGAAATTAGAACCATCTGTGCGTCAAGCCCTTGTTGAAGAAGGCAAGAACCTGAAAGAAGGGCTTATTGCCCTAGAAGAGGACCTTGTTCAGCTGACTGATAAGCTTCAACTAGAAGCACAAAGCATTCCTAACACCACACATCCAGATGCTCCTGTAGGGGGTGAGGAAAGTTCTGTCGTCAGAAAAGAGGTTGGTAGTCAGAGAAACTTCAATTTCACCATTAGAGATCACCTTCAGCTGGGAAAAGAACTTGATTTGTTTGATTTTGATGCAGCTGCTGAGGTTAGTGGCTCGAAGTTCTACTACTTAAAGAATGAAGCTGTTCTGTTGGAGATGGCCCTTGTTAATTGGGCCATCACTGAGGTCTCAAAGAAAGGTTTCACACCACTAATAACTCCGGAGATTGTAAGGTCATCTGTTGTTGAGAAATGTGGCTTCCAGCCAAGGGCCCAAAATACTCAGGTTTATTCGATCGATAACAGTGATCAGTGCCTCATAGGAACTGCAGAGATTCCTGTTGGCGGCATCCATATGGACTCTATACTCCCTGATTCTGATTTGCCTCGAAAATATGTAGCCTATTCACATTGTTTTCGCACAGAAGCTGGTGCCGCAGGTGCTGCCACTAGGGGCCTCTACCGTGTACATCAGTTTAGCAAGGTTGAGATGTTTGTATTTTGCCGGCCAGAGGAGAGCGACAAGTGCCATGAAGAACTTATCACTATTGAAGAGGAACTTTATGCATCACTTGGACTTCATTTCAAAACTTTGGATATGGCGACTGGGGATCTGGGAGCACCGGCCTACAGAAAGTTTGACATTGAGGCATGGATGCCAGGCCTAGATAGGTACGGTGAGATCTCGAGCGCGTCAAACTGCACAGACTATCAGAGCAGGCGGCTGGGCATCCGGTTTCGCCCATCACCTGCAGATCCTCCACCGGCGAACGCCAAGAAAGGAAAGGGCAGCTCAGGCCCAACACAGTTTGTCCACACGCTCAACGCGACAGCGGTTGCTGTTCCTCGCTTGATCATATGCATCCTGGAGAACTTTCAGCAAGAAGATGGAACGGTTGTGATCCCAGAGCCACTGAGGCCCTTCATGGGCGGACTTGAAGTGCTCTCCCCGAAAACCAAATGATCAGCTTGAAGGTCACCACGTTTACTTCGAATCTTGTTTTTTTTATAGATTTACAGTCTTTTTTTCCCCCGAGGATATTGGCAAGTGAATGTGCAGAATTTCAAAGAAATCTGTGGTCGATTCCAAATGTTCCATGCGAAATTCGTGGCTGTTAGTTGGCCACCGATTGTCGATTGTTGTTTTGGCAACATATCCAGGTTAACTATTTCCTCCTTGTCAAAATATAGCAAACTTGGAATGGATATATAGTCCAATGATTATGGACAAGGGGCTAGCCAGATTCTTTGGACTAGTATGCTTTCCATCAGTTTTAATAGTTTGCTATATTTTGGGATGGAGGGAGTAGTTGAACAAACTCAGTATTACACTTGTAGTTAACTGGTAACTCCACATATGCCCATTGTATTGGATATCCCTTGCGAAATATTTCCTCCGTCCCAAAGTATATGGTTTTTAGGTGGATGAGACATCTTAATACTATGAATCTGAACAGATTTAGTACTAGGATGTATTTCATTCACCCAAAATATGTTATACTTTGGGATGGTGGGAGTATTTGTCCACGGGAGAACTATACCGGAGTAGTTTGTGCTAGAACAATAGTACTAGTGCTTTGTCAGTTTAATATCTGTTCGTTTACGGCTGTGTTTAGTTCAGCACAAAGTTTGGATTTTGGTTGAAATTGGAGATGATGTGATTGAAAA
CDS Sequence
- >LOC_Os11g39670.1
ATGCTGACCTGCGGCCGCTTCCTCTCCTCCTCCGCCGCCGCCTCCACCCCCTCCCTCTCCCCCTTCCGGAACCTAACCCTCTCCCTCCTCCGCCGTCCCCATCTCCGCCTCCTCTCCTCCTCCGCCACCGCCTCCGCCGCCGCCGCCGCCGTCGAGCCCGACACCAAGGGTGGCGCGGGTGGCGGCGCCGCGAAGCCGCAGTGGAAGGCGGCGATAGACTTCAAGTGGATCCGGGAGAACACGGACGCCGTCGCCGCCAACATCCGCGACCGCAACTCCGCCGCCAACCTCGACCTCGTCCTCCAGCTCTACGACGAGTACCTCGCCTTGCAGAAGGAAGTTGAACGGCTCCGAGCTGAAAGAAATGCAGTTGCTAATAAGATGAAAGGGAAATTAGAACCATCTGTGCGTCAAGCCCTTGTTGAAGAAGGCAAGAACCTGAAAGAAGGGCTTATTGCCCTAGAAGAGGACCTTGTTCAGCTGACTGATAAGCTTCAACTAGAAGCACAAAGCATTCCTAACACCACACATCCAGATGCTCCTGTAGGGGGTGAGGAAAGTTCTGTCGTCAGAAAAGAGGTTGGTAGTCAGAGAAACTTCAATTTCACCATTAGAGATCACCTTCAGCTGGGAAAAGAACTTGATTTGTTTGATTTTGATGCAGCTGCTGAGGTTAGTGGCTCGAAGTTCTACTACTTAAAGAATGAAGCTGTTCTGTTGGAGATGGCCCTTGTTAATTGGGCCATCACTGAGGTCTCAAAGAAAGGTTTCACACCACTAATAACTCCGGAGATTGTAAGGTCATCTGTTGTTGAGAAATGTGGCTTCCAGCCAAGGGCCCAAAATACTCAGGTTTATTCGATCGATAACAGTGATCAGTGCCTCATAGGAACTGCAGAGATTCCTGTTGGCGGCATCCATATGGACTCTATACTCCCTGATTCTGATTTGCCTCGAAAATATGTAGCCTATTCACATTGTTTTCGCACAGAAGCTGGTGCCGCAGGTGCTGCCACTAGGGGCCTCTACCGTGTACATCAGTTTAGCAAGGTTGAGATGTTTGTATTTTGCCGGCCAGAGGAGAGCGACAAGTGCCATGAAGAACTTATCACTATTGAAGAGGAACTTTATGCATCACTTGGACTTCATTTCAAAACTTTGGATATGGCGACTGGGGATCTGGGAGCACCGGCCTACAGAAAGTTTGACATTGAGGCATGGATGCCAGGCCTAGATAGGTACGGTGAGATCTCGAGCGCGTCAAACTGCACAGACTATCAGAGCAGGCGGCTGGGCATCCGGTTTCGCCCATCACCTGCAGATCCTCCACCGGCGAACGCCAAGAAAGGAAAGGGCAGCTCAGGCCCAACACAGTTTGTCCACACGCTCAACGCGACAGCGGTTGCTGTTCCTCGCTTGATCATATGCATCCTGGAGAACTTTCAGCAAGAAGATGGAACGGTTGTGATCCCAGAGCCACTGAGGCCCTTCATGGGCGGACTTGAAGTGCTCTCCCCGAAAACCAAATGA - >LOC_Os11g39670.2
ATGCTGACCTGCGGCCGCTTCCTCTCCTCCTCCGCCGCCGCCTCCACCCCCTCCCTCTCCCCCTTCCGGAACCTAACCCTCTCCCTCCTCCGCCGTCCCCATCTCCGCCTCCTCTCCTCCTCCGCCACCGCCTCCGCCGCCGCCGCCGCCGTCGAGCCCGACACCAAGGGTGGCGCGGGTGGCGGCGCCGCGAAGCCGCAGTGGAAGGCGGCGATAGACTTCAAGTGGATCCGGGAGAACACGGACGCCGTCGCCGCCAACATCCGCGACCGCAACTCCGCCGCCAACCTCGACCTCGTCCTCCAGCTCTACGACGAGTACCTCGCCTTGCAGAAGGAAGTTGAACGGCTCCGAGCTGAAAGAAATGCAGTTGCTAATAAGATGAAAGGGAAATTAGAACCATCTGTGCGTCAAGCCCTTGTTGAAGAAGGCAAGAACCTGAAAGAAGGGCTTATTGCCCTAGAAGAGGACCTTGTTCAGCTGACTGATAAGCTTCAACTAGAAGCACAAAGCATTCCTAACACCACACATCCAGATGCTCCTGTAGGGGGTGAGGAAAGTTCTGTCGTCAGAAAAGAGGTTGGTAGTCAGAGAAACTTCAATTTCACCATTAGAGATCACCTTCAGCTGGGAAAAGAACTTGATTTGTTTGATTTTGATGCAGCTGCTGAGGTTAGTGGCTCGAAGTTCTACTACTTAAAGAATGAAGCTGTTCTGTTGGAGATGGCCCTTGTTAATTGGGCCATCACTGAGGTCTCAAAGAAAGGTTTCACACCACTAATAACTCCGGAGATTGTAAGGTCATCTGTTGTTGAGAAATGTGGCTTCCAGCCAAGGGCCCAAAATACTCAGGTTTATTCGATCGATAACAGTGATCAGTGCCTCATAGGAACTGCAGAGATTCCTGTTGGCGGCATCCATATGGACTCTATACTCCCTGATTCTGATTTGCCTCGAAAATATGTAGCCTATTCACATTGTTTTCGCACAGAAGCTGGTGCCGCAGGTGCTGCCACTAGGGGCCTCTACCGTGTACATCAGTTTAGCAAGGTTGAGATGTTTGTATTTTGCCGGCCAGAGGAGAGCGACAAGTGCCATGAAGAACTTATCACTATTGAAGAGGAACTTTATGCATCACTTGGACTTCATTTCAAAACTTTGGATATGGCGACTGGGGATCTGGGAGCACCGGCCTACAGAAAGTTTGACATTGAGGCATGGATGCCAGGCCTAGATAGGTACGGTGAGATCTCGAGCGCGTCAAACTGCACAGACTATCAGAGCAGGCGGCTGGGCATCCGGTTTCGCCCATCACCTGCAGATCCTCCACCGGCGAACGCCAAGAAAGGAAAGGGCAGCTCAGGCCCAACACAGTTTGTCCACACGCTCAACGCGACAGCGGTTGCTGTTCCTCGCTTGATCATATGCATCCTGGAGAACTTTCAGCAAGAAGATGGAACGGTTGTGATCCCAGAGCCACTGAGGCCCTTCATGGGCGGACTTGAAGTGCTCTCCCCGAAAACCAAATGA
Protein Sequence
- >LOC_Os11g39670.1
MLTCGRFLSSSAAASTPSLSPFRNLTLSLLRRPHLRLLSSSATASAAAAAVEPDTKGGAGGGAAKPQWKAAIDFKWIRENTDAVAANIRDRNSAANLDLVLQLYDEYLALQKEVERLRAERNAVANKMKGKLEPSVRQALVEEGKNLKEGLIALEEDLVQLTDKLQLEAQSIPNTTHPDAPVGGEESSVVRKEVGSQRNFNFTIRDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWAITEVSKKGFTPLITPEIVRSSVVEKCGFQPRAQNTQVYSIDNSDQCLIGTAEIPVGGIHMDSILPDSDLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPEESDKCHEELITIEEELYASLGLHFKTLDMATGDLGAPAYRKFDIEAWMPGLDRYGEISSASNCTDYQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQFVHTLNATAVAVPRLIICILENFQQEDGTVVIPEPLRPFMGGLEVLSPKTK* - >LOC_Os11g39670.2
MLTCGRFLSSSAAASTPSLSPFRNLTLSLLRRPHLRLLSSSATASAAAAAVEPDTKGGAGGGAAKPQWKAAIDFKWIRENTDAVAANIRDRNSAANLDLVLQLYDEYLALQKEVERLRAERNAVANKMKGKLEPSVRQALVEEGKNLKEGLIALEEDLVQLTDKLQLEAQSIPNTTHPDAPVGGEESSVVRKEVGSQRNFNFTIRDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALVNWAITEVSKKGFTPLITPEIVRSSVVEKCGFQPRAQNTQVYSIDNSDQCLIGTAEIPVGGIHMDSILPDSDLPRKYVAYSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVFCRPEESDKCHEELITIEEELYASLGLHFKTLDMATGDLGAPAYRKFDIEAWMPGLDRYGEISSASNCTDYQSRRLGIRFRPSPADPPPANAKKGKGSSGPTQFVHTLNATAVAVPRLIICILENFQQEDGTVVIPEPLRPFMGGLEVLSPKTK*