Gene Details:
- MSU gene ID: LOC_Os11g05556
- RAPdb gene ID: Os11g0153700
- Gene Symbol: OscpSRP54b
- Genome: MSU7 , IRGSP-1.0
- Species: Oryza sativa
Functional Descriptions:
- Knockout lines of OscpSRP54b (LOC_Os11g05556) exhibited similar pale green phenotype to pgl14 with reduced chlorophyll contents and impaired chloroplast development, but showed apparently arrested-growth and died within 3 weeks.
- Conclusion: Our study demonstrated that both OscpSRP54a and OscpSRP54b were essential for normal chloroplast development by interacting with OscpSRP43 in rice.
- OscpSRP54a and OscpSRP54b might play distinct roles in transporting different chloroplast proteins into thylakoids through cpSRP-mediated pathway.
- Both OscpSRP54a and OscpSRP54b were constitutively expressed mainly in shoots and leaves at the vegetative growth stage.
Function-related keywords:
Literature:
- Chloroplast SRP54s are Essential for Chloroplast Development in Rice . DOI: 10.1186/s12284-020-00415-2 ; PMID: 32761436
Related News:
Gene Resources:
Sequences:
cDNA Sequence
- >LOC_Os11g05556.2
ACGCCACCAAAAATGGAGGCCACCAGTAGTACTACACTAGCGCTCTCCTCGCCGCCCACCGCCGCCGCCCGCCGCTCGCCGGCGAAGGCGATCGTCGCCTCCCACCACCTGCGCCACTCCTCCGTCCCCGCCCTTCACCTCCGCGCGGTCCCCGGCCCCTCCTTCCGCGCCCTCCCCTCACCCGGCTTCCCGGTCCCTCCCAACTGCTAGTTTCTTGGTTTCTTCAATTCTTCCGCCCCGGAGAAATTTCGCTTTTGCTGATTTGTCTTGGATGCGTTCAGGGATGGAGGAGGAAGAGGGGAAGCGGGCTGGTTGTGCGGGCAGAGATGTTTGGGCAGCTCACGACCGGGCTGGAGTCCGCGTGGAACAAGCTGCGGGGAACAGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGGGATATCAGAAGAGCACTTTTGGAGGCAGATGTGAGTTTGCCGGTAGTGAGAAGTTTTATTGAGTCCGTTACTGAAAAAGCTGTAGGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGCTGGTGAAGGTTGTGAATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGATTTGGTGTTTGCAAAAACTGCCCCAACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAAACTACTGTTTGTGCAAAGCTTGCCTATTATCTAAAGAAAATGGGGAAGAGTTGCATGCTGATTGCTGCGGATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCTGGGGAAACAGGTTGGGGTTCCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAATTGCCAAGAATGGCATAAAGGAGGCAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGCTGGAAGGCTGCAGGTAGATAAAGCCATGATGAGTGAGTTGAAAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACTTGTGGTGGATGCCATGACTGGACAAGAAGCTGCATCATTGGTTAGCACCTTCAATGTTGAGATTGGTATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCCAGAGGTGGAGCAGCACTAAGTATCAAAGAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGGAGAACGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGAGATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTGATGCGTCAAGAAGATGCTGAGGAATTACAGAAGAAGATCCTGAGTGCAAAATTTAACTTCAATGACTTCTTGAAGCAAACACAAGCTATCGCACAAATGGGTTCATTTAGTCGTATAATTGGCATGATTCCAGGCATGAACAAGGTTACCCCTGCTCAAATTCGTGAAGCGGAGAAAAACCTTAAATTTATGGAGTCCATGATCAACGTAATGACCCCTGAGGAAAGGGAAAGACCAGAGCTACTTGCTGAATCACGCGAGAGGAGGATAAGAGTGGCCAAGGAATCCGGAAAAAACGAACGACAGGTGAGCCAATTGGTTGCGCAGCTCTTCCGAATGCGTGCTCAAATGCAGAAAATGATGGGTGCTATGCAAGGGCAAGACACCCCTGATATGGAAGGCCTCATGGATTCCATCAAGGCAGAAGAGCAGGCTGCCGCTGGTACTGGAAAGCGAAGGAGAAAGTATGGCAATCTGAGGCGGCGAGACCTGGATGCAATGCGCGGTTTCCGTCGACGATGAATGTTCATTGGCTCTTTCTGAACCAAAGTGTTTTGATGCCAGTTACATGTATAGGAAGCGAGAATTTGGATGCTTTTGGGGAGCTACTGGTTTGCTGTGATCACCATGTAGTTTCTGTTGTAATTTTTTTCTTTTTTTGAAAAGACGTACTAGTATATCGGTATATGTTGTATTTTTGGCCATCAATTTAGCTCATAAGTTGTGTTCCTTGCCCATTTTTTGTGATCTCTAGCTGAAACTCGCAAATGGTGGCAAAGTGGAACATACAAACTGCTCTCCATTTCAATTTATAATAATAATTTTTCTATATAA - >LOC_Os11g05556.1
ACGCCACCAAAAATGGAGGCCACCAGTAGTACTACACTAGCGCTCTCCTCGCCGCCCACCGCCGCCGCCCGCCGCTCGCCGGCGAAGGCGATCGTCGCCTCCCACCACCTGCGCCACTCCTCCGTCCCCGCCCTTCACCTCCGCGCGGTCCCCGGCCCCTCCTTCCGCGCCCTCCCCTCACCCGGCTTCCCGGTCCCTCCCAACTGCTAGTTTCTTGGTTTCTTCAATTCTTCCGCCCCGGAGAAATTTCGCTTTTGCTGATTTGTCTTGGATGCGTTCAGGGATGGAGGAGGAAGAGGGGAAGCGGGCTGGTTGTGCGGGCAGAGATGTTTGGGCAGCTCACGACCGGGCTGGAGTCCGCGTGGAACAAGCTGCGGGGAACAGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGGGATATCAGAAGAGCACTTTTGGAGGCAGATGTGAGTTTGCCGGTAGTGAGAAGTTTTATTGAGTCCGTTACTGAAAAAGCTGTAGGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGCTGGTGAAGGTTGTGAATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGATTTGGTGTTTGCAAAAACTGCCCCAACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAAACTACTGTTTGTGCAAAGCTTGCCTATTATCTAAAGAAAATGGGGAAGAGTTGCATGCTGATTGCTGCGGATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCTGGGGAAACAGGTTGGGGTTCCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAATTGCCAAGAATGGCATAAAGGAGGCAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGCTGGAAGGCTGCAGGTAGATAAAGCCATGATGAGTGAGTTGAAAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACTTGTGGTGGATGCCATGACTGGACAAGAAGCTGCATCATTGGTTAGCACCTTCAATGTTGAGATTGGTATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCCAGAGGTGGAGCAGCACTAAGTATCAAAGAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGGAGAACGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGAGATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTGATGCGTCAAGAAGATGCTGAGGAATTACAGAAGAAGATCCTGAGTGCAAAATTTAACTTCAATGACTTCTTGAAGCAAACACAAGCTATCGCACAAATGGGTTCATTTAGTCGTATAATTGGCATGATTCCAGGCATGAACAAGGTTACCCCTGCTCAAATTCGTGAAGCGGAGAAAAACCTTAAATTTATGGAGTCCATGATCAACGTAATGACCCCTGAGGAAAGGGAAAGACCAGAGCTACTTGCTGAATCACGCGAGAGGAGGATAAGAGTGGCCAAGGAATCCGGAAAAAACGAACGACAGGTGAGCCAATTGGTTGCGCAGCTCTTCCGAATGCGTGCTCAAATGCAGAAAATGATGGGTGCTATGCAAGGGCAAGACACCCCTGATATGGAAGGCCTCATGGATTCCATCAAGGCAGAAGAGCAGGCTGCCGCTGGTACTGGAAAGCGAAGGAGAAAGTATGGCAATCTGAGGCGGCGAGACCTGGATGCAATGCGCGGTTTCCGTCGACGATGAATGTTCATTGGCTCTTTCTGAACCAAAGTGTTTTGATGCCAGTTACATGTATAGGAAGCGAGAATTTGGATGCTTTTGGGGAGCTACTGGTTTGCTGTGATCACCATGTAGTTTCTGTTGTAATTTTTTTCTTTTTTTGAAAAGACGTACTAGTATATCGGTATATGTTGTATTTTTGGCCATCAATTTAGCTCATAAGTTGTGTTCCTTGCCCATTTTTTGTGATCTCTAGCTGAAACTCGCAAATGGTGGCAAAGTGGAACATACAAACTGCTCTCCATTTCAATTTATAATAATAATTTTTCTATATAA
CDS Sequence
- >LOC_Os11g05556.2
ATGTTTGGGCAGCTCACGACCGGGCTGGAGTCCGCGTGGAACAAGCTGCGGGGAACAGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGGGATATCAGAAGAGCACTTTTGGAGGCAGATGTGAGTTTGCCGGTAGTGAGAAGTTTTATTGAGTCCGTTACTGAAAAAGCTGTAGGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGCTGGTGAAGGTTGTGAATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGATTTGGTGTTTGCAAAAACTGCCCCAACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAAACTACTGTTTGTGCAAAGCTTGCCTATTATCTAAAGAAAATGGGGAAGAGTTGCATGCTGATTGCTGCGGATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCTGGGGAAACAGGTTGGGGTTCCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAATTGCCAAGAATGGCATAAAGGAGGCAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGCTGGAAGGCTGCAGGTAGATAAAGCCATGATGAGTGAGTTGAAAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACTTGTGGTGGATGCCATGACTGGACAAGAAGCTGCATCATTGGTTAGCACCTTCAATGTTGAGATTGGTATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCCAGAGGTGGAGCAGCACTAAGTATCAAAGAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGGAGAACGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGAGATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTGATGCGTCAAGAAGATGCTGAGGAATTACAGAAGAAGATCCTGAGTGCAAAATTTAACTTCAATGACTTCTTGAAGCAAACACAAGCTATCGCACAAATGGGTTCATTTAGTCGTATAATTGGCATGATTCCAGGCATGAACAAGGTTACCCCTGCTCAAATTCGTGAAGCGGAGAAAAACCTTAAATTTATGGAGTCCATGATCAACGTAATGACCCCTGAGGAAAGGGAAAGACCAGAGCTACTTGCTGAATCACGCGAGAGGAGGATAAGAGTGGCCAAGGAATCCGGAAAAAACGAACGACAGGTGAGCCAATTGGTTGCGCAGCTCTTCCGAATGCGTGCTCAAATGCAGAAAATGATGGGTGCTATGCAAGGGCAAGACACCCCTGATATGGAAGGCCTCATGGATTCCATCAAGGCAGAAGAGCAGGCTGCCGCTGGTACTGGAAAGCGAAGGAGAAAGTATGGCAATCTGAGGCGGCGAGACCTGGATGCAATGCGCGGTTTCCGTCGACGATGA - >LOC_Os11g05556.1
ATGTTTGGGCAGCTCACGACCGGGCTGGAGTCCGCGTGGAACAAGCTGCGGGGAACAGATCAACTGACGAAGGACAACATCGCTGAACCAATGCGGGATATCAGAAGAGCACTTTTGGAGGCAGATGTGAGTTTGCCGGTAGTGAGAAGTTTTATTGAGTCCGTTACTGAAAAAGCTGTAGGCACTGATGTGATTCGAGGTGTCAAGCCTGAGCAACAGCTGGTGAAGGTTGTGAATGATGAACTTGTACAGTTGATGGGTGGGGAGGTATCAGATTTGGTGTTTGCAAAAACTGCCCCAACAGTTATCCTATTGGCGGGTCTACAAGGTGTTGGGAAAACTACTGTTTGTGCAAAGCTTGCCTATTATCTAAAGAAAATGGGGAAGAGTTGCATGCTGATTGCTGCGGATGTCTACAGGCCTGCTGCCATTGATCAACTCACTATTCTGGGGAAACAGGTTGGGGTTCCAGTTTACTCTGAAGGAACTGAAGCTAAACCTTCACAAATTGCCAAGAATGGCATAAAGGAGGCAAAAAGCAAGAAAACTGACGTAATCATAGTGGATACTGCTGGAAGGCTGCAGGTAGATAAAGCCATGATGAGTGAGTTGAAAGAGGTAAAAAGGGCAGTAAATCCTACAGAAGTTCTACTTGTGGTGGATGCCATGACTGGACAAGAAGCTGCATCATTGGTTAGCACCTTCAATGTTGAGATTGGTATTACTGGTGCTATACTGACAAAACTGGATGGTGATTCCAGAGGTGGAGCAGCACTAAGTATCAAAGAGGTATCTGGAAAGCCCATCAAGTTTGTAGGGCGAGGAGAACGCATGGAAGATCTTGAGCCTTTCTATCCTGATCGTATGGCACAACGAATCTTGGGAATGGGAGATGTACTTTCATTTGTTGAAAAGGCACAGGAAGTGATGCGTCAAGAAGATGCTGAGGAATTACAGAAGAAGATCCTGAGTGCAAAATTTAACTTCAATGACTTCTTGAAGCAAACACAAGCTATCGCACAAATGGGTTCATTTAGTCGTATAATTGGCATGATTCCAGGCATGAACAAGGTTACCCCTGCTCAAATTCGTGAAGCGGAGAAAAACCTTAAATTTATGGAGTCCATGATCAACGTAATGACCCCTGAGGAAAGGGAAAGACCAGAGCTACTTGCTGAATCACGCGAGAGGAGGATAAGAGTGGCCAAGGAATCCGGAAAAAACGAACGACAGGTGAGCCAATTGGTTGCGCAGCTCTTCCGAATGCGTGCTCAAATGCAGAAAATGATGGGTGCTATGCAAGGGCAAGACACCCCTGATATGGAAGGCCTCATGGATTCCATCAAGGCAGAAGAGCAGGCTGCCGCTGGTACTGGAAAGCGAAGGAGAAAGTATGGCAATCTGAGGCGGCGAGACCTGGATGCAATGCGCGGTTTCCGTCGACGATGA
Protein Sequence
- >LOC_Os11g05556.2
MFGQLTTGLESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFIESVTEKAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVSDLVFAKTAPTVILLAGLQGVGKTTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVNPTEVLLVVDAMTGQEAASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRMAQRILGMGDVLSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQAIAQMGSFSRIIGMIPGMNKVTPAQIREAEKNLKFMESMINVMTPEERERPELLAESRERRIRVAKESGKNERQVSQLVAQLFRMRAQMQKMMGAMQGQDTPDMEGLMDSIKAEEQAAAGTGKRRRKYGNLRRRDLDAMRGFRRR* - >LOC_Os11g05556.1
MFGQLTTGLESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFIESVTEKAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVSDLVFAKTAPTVILLAGLQGVGKTTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNGIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVNPTEVLLVVDAMTGQEAASLVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRMAQRILGMGDVLSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQAIAQMGSFSRIIGMIPGMNKVTPAQIREAEKNLKFMESMINVMTPEERERPELLAESRERRIRVAKESGKNERQVSQLVAQLFRMRAQMQKMMGAMQGQDTPDMEGLMDSIKAEEQAAAGTGKRRRKYGNLRRRDLDAMRGFRRR*